Wall clock time and date at job start Tue Mar 31 2020 01:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 120.00277 * 2 1 4 4 H 1.07998 * 120.00238 * 203.05099 * 3 2 1 5 5 C 1.38816 * 120.00085 * 23.04430 * 3 2 1 6 6 N 1.31624 * 119.99561 * 12.93811 * 5 3 2 7 7 Si 1.86793 * 120.00041 * 192.93748 * 5 3 2 8 8 H 1.48498 * 109.47250 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47022 * 120.00243 * 7 5 3 10 10 H 1.48497 * 109.47295 * 240.00205 * 7 5 3 11 11 C 1.46500 * 119.99846 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47725 * 89.99754 * 11 2 1 13 13 C 1.52995 * 109.47456 * 180.02562 * 12 11 2 14 14 N 1.46505 * 109.47465 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00199 * 179.97438 * 14 13 12 16 16 O 1.21782 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.41543 * 120.00323 * 180.02562 * 15 14 13 18 18 C 1.35625 * 120.00749 * 180.02562 * 17 15 14 19 19 C 1.41599 * 120.00293 * 180.02562 * 18 17 15 20 20 C 1.37959 * 126.10118 * 180.02562 * 19 18 17 21 21 C 1.40314 * 106.52694 * 179.97438 * 20 19 18 22 22 C 1.35158 * 107.20798 * 359.97438 * 21 20 19 23 23 O 1.34018 * 109.03048 * 359.77418 * 22 21 20 24 24 H 1.09002 * 109.47437 * 275.12433 * 1 2 3 25 25 H 1.09005 * 109.47250 * 35.12123 * 1 2 3 26 26 H 1.08996 * 109.47221 * 155.11950 * 1 2 3 27 27 H 0.96998 * 119.99192 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46829 * 329.99016 * 11 2 1 29 29 H 1.09005 * 109.46707 * 210.00002 * 11 2 1 30 30 H 1.08994 * 109.47140 * 59.99628 * 12 11 2 31 31 H 1.09005 * 109.47231 * 299.99927 * 12 11 2 32 32 H 1.09004 * 109.47561 * 59.99592 * 13 12 11 33 33 H 1.09003 * 109.46984 * 299.99646 * 13 12 11 34 34 H 0.96996 * 119.99710 * 0.02562 * 14 13 12 35 35 H 1.08004 * 119.99557 * 0.02562 * 17 15 14 36 36 H 1.08004 * 119.99694 * 0.02562 * 18 17 15 37 37 H 1.08000 * 126.73736 * 359.97438 * 20 19 18 38 38 H 1.08005 * 126.39726 * 179.97438 * 21 20 19 39 39 H 1.07993 * 125.48720 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1460 7 14 2.3159 4.0073 0.1453 8 1 3.5693 3.8264 -0.6302 9 1 1.3716 4.8507 -0.6307 10 1 2.6243 4.6703 1.4378 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 6 3.2168 -3.0352 -1.4436 14 7 3.4605 -3.4580 -2.8251 15 6 4.1228 -4.6055 -3.0717 16 8 4.5185 -5.2912 -2.1464 17 6 4.3587 -5.0137 -4.4063 18 6 5.0248 -6.1687 -4.6547 19 6 5.2612 -6.5767 -5.9899 20 6 5.9213 -7.7219 -6.3851 21 6 5.9203 -7.7190 -7.7883 22 6 5.2751 -6.5997 -8.1854 23 8 4.8756 -5.9182 -7.1027 24 1 -0.3634 0.0918 1.0236 25 1 -0.3634 0.8406 -0.5912 26 1 -0.3633 -0.9322 -0.4323 27 1 -0.0147 3.0663 1.4751 28 1 1.6083 -2.0286 0.5131 29 1 3.1499 -1.1386 0.5134 30 1 3.0414 -0.9501 -1.9567 31 1 1.5000 -1.8401 -1.9571 32 1 2.6274 -3.7949 -0.9302 33 1 4.1693 -2.9055 -0.9297 34 1 3.1457 -2.9117 -3.5621 35 1 4.0082 -4.4053 -5.2270 36 1 5.3750 -6.7773 -3.8340 37 1 6.3538 -8.4732 -5.7410 38 1 6.3543 -8.4707 -8.4310 39 1 5.1055 -6.3040 -9.2101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231295152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:58 Heat of formation + Delta-G solvation = 13.593536 kcal Electronic energy + Delta-G solvation = -19969.537777 eV Core-core repulsion = 16687.082984 eV Total energy + Delta-G solvation = -3282.454793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.92009 -39.81309 -36.32161 -34.86708 -34.30622 -33.42388 -32.03515 -30.22706 -29.07781 -26.05820 -25.61863 -23.93042 -22.28820 -21.86833 -20.97671 -20.37432 -19.47386 -17.90989 -17.05458 -16.70555 -16.46178 -15.99350 -15.42895 -14.96624 -14.84227 -14.12841 -14.08323 -13.40109 -13.34709 -13.19487 -12.93954 -12.83209 -12.62607 -12.38563 -11.71597 -11.41771 -11.01301 -10.95105 -10.79595 -10.77382 -10.46543 -10.29935 -10.17764 -9.99628 -9.83284 -9.78061 -8.98140 -8.53618 -8.29949 -6.72290 -5.70520 -3.17532 0.14831 1.77207 2.36294 2.56496 3.34364 3.36697 3.38681 3.45515 3.47611 4.37750 4.51235 4.52596 4.58219 4.83697 5.05481 5.26330 5.27033 5.36916 5.44729 5.48247 5.64000 5.70653 5.81445 5.89424 5.97299 6.07830 6.12797 6.21063 6.43753 6.59794 6.66692 6.76539 6.78700 6.96032 7.39123 7.56309 7.75223 7.82611 8.23667 8.42170 9.25924 9.89594 10.38699 11.34354 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032416 B = 0.002365 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.566028 B =11836.729011 C =12249.359990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.604 5.604 3 C -0.253 4.253 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.151 4.151 13 C 0.119 3.881 14 N -0.720 5.720 15 C 0.543 3.457 16 O -0.552 6.552 17 C -0.199 4.199 18 C 0.002 3.998 19 C -0.006 4.006 20 C -0.167 4.167 21 C -0.219 4.219 22 C -0.022 4.022 23 O -0.165 6.165 24 H 0.031 0.969 25 H 0.039 0.961 26 H -0.003 1.003 27 H 0.251 0.749 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.401 0.599 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 -18.605 -17.895 27.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.199 4.199 6 N -0.553 5.553 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.004 4.004 14 N -0.370 5.370 15 C 0.333 3.667 16 O -0.433 6.433 17 C -0.219 4.219 18 C -0.018 4.018 19 C -0.056 4.056 20 C -0.186 4.186 21 C -0.238 4.238 22 C -0.091 4.091 23 O -0.061 6.061 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.236 0.764 35 H 0.148 0.852 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 8.397 -18.628 -17.106 26.648 hybrid contribution 0.233 1.139 -0.750 1.383 sum 8.630 -17.489 -17.856 26.442 Atomic orbital electron populations 1.20788 0.82682 0.95301 0.99477 1.43906 1.01859 1.00704 1.86157 1.19226 0.98232 0.85609 1.35246 0.91399 1.25048 0.97947 0.98593 0.98297 1.70086 1.19490 1.27038 1.38710 0.86186 0.78524 0.84345 0.77502 1.20339 1.21664 1.21726 1.20600 0.96362 0.88496 0.91858 1.22529 0.99479 0.94242 1.02902 1.21471 1.00465 0.96979 0.81524 1.46096 1.57328 1.23564 1.10030 1.16995 0.78817 0.81493 0.89433 1.90834 1.51738 1.54085 1.46625 1.22171 1.03521 0.99032 0.97210 1.20665 0.94179 0.95850 0.91094 1.19932 1.04619 0.94502 0.86517 1.22386 1.02399 0.98223 0.95582 1.21803 1.06077 1.00491 0.95428 1.24338 1.00448 0.93232 0.91059 1.84113 1.61865 1.45929 1.14167 0.95080 0.94188 0.98401 0.93831 0.94391 0.93257 0.91548 0.92234 0.91673 0.91518 0.76444 0.85207 0.82172 0.82573 0.82923 0.77701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.03 8.98 59.84 0.54 4.57 16 2 N -0.60 -15.28 2.92 -181.12 -0.53 -15.81 16 3 C -0.25 -7.00 9.65 -15.06 -0.15 -7.14 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.42 16 5 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16 6 N -0.91 -26.82 10.71 55.49 0.59 -26.22 16 7 Si 0.90 21.97 29.57 -169.99 -5.03 16.95 16 8 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 9 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 11 C 0.16 3.15 5.64 -4.05 -0.02 3.13 16 12 C -0.15 -2.51 5.65 -26.74 -0.15 -2.66 16 13 C 0.12 1.76 5.67 -4.04 -0.02 1.74 16 14 N -0.72 -9.29 5.55 -63.24 -0.35 -9.64 16 15 C 0.54 7.43 7.56 -15.00 -0.11 7.32 16 16 O -0.55 -9.43 16.11 5.12 0.08 -9.34 16 17 C -0.20 -2.14 9.41 -39.26 -0.37 -2.51 16 18 C 0.00 0.02 9.39 -39.24 -0.37 -0.35 16 19 C -0.01 -0.06 6.84 -38.40 -0.26 -0.32 16 20 C -0.17 -1.30 10.90 -38.90 -0.42 -1.73 16 21 C -0.22 -1.44 10.87 -39.90 -0.43 -1.87 16 22 C -0.02 -0.14 12.06 29.64 0.36 0.22 16 23 O -0.17 -1.52 10.18 4.69 0.05 -1.47 16 24 H 0.03 0.84 7.34 -51.93 -0.38 0.45 16 25 H 0.04 1.06 7.34 -51.93 -0.38 0.68 16 26 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.05 1.01 8.04 -51.93 -0.42 0.59 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.40 4.24 8.43 -40.82 -0.34 3.89 16 35 H 0.13 1.17 7.72 -52.48 -0.41 0.77 16 36 H 0.16 1.54 7.46 -52.48 -0.39 1.15 16 37 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 38 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 39 H 0.21 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -33.54 339.43 -7.24 -40.78 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.66 Total: -0.64 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.51 Total: 0.29 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.29 Total: -51.66 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.13 Total: -10.82 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.54 -7.24 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231295152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.373 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds