Wall clock time and date at job start Tue Mar 31 2020 01:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36938 * 120.00277 * 2 1 4 4 H 1.07998 * 120.00238 * 203.05099 * 3 2 1 5 5 C 1.38816 * 120.00085 * 23.04430 * 3 2 1 6 6 N 1.31624 * 119.99561 * 12.93811 * 5 3 2 7 7 Si 1.86793 * 120.00041 * 192.93748 * 5 3 2 8 8 H 1.48498 * 109.47250 * 0.02562 * 7 5 3 9 9 H 1.48506 * 109.47022 * 120.00243 * 7 5 3 10 10 H 1.48497 * 109.47295 * 240.00205 * 7 5 3 11 11 C 1.46500 * 119.99846 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47725 * 89.99754 * 11 2 1 13 13 C 1.52995 * 109.47456 * 180.02562 * 12 11 2 14 14 N 1.46505 * 109.47465 * 179.97438 * 13 12 11 15 15 C 1.34772 * 120.00199 * 179.97438 * 14 13 12 16 16 O 1.21782 * 120.00082 * 0.02562 * 15 14 13 17 17 C 1.41543 * 120.00323 * 180.02562 * 15 14 13 18 18 C 1.35625 * 120.00749 * 180.02562 * 17 15 14 19 19 C 1.41599 * 120.00293 * 180.02562 * 18 17 15 20 20 C 1.37959 * 126.10118 * 180.02562 * 19 18 17 21 21 C 1.40314 * 106.52694 * 179.97438 * 20 19 18 22 22 C 1.35158 * 107.20798 * 359.97438 * 21 20 19 23 23 O 1.34018 * 109.03048 * 359.77418 * 22 21 20 24 24 H 1.09002 * 109.47437 * 275.12433 * 1 2 3 25 25 H 1.09005 * 109.47250 * 35.12123 * 1 2 3 26 26 H 1.08996 * 109.47221 * 155.11950 * 1 2 3 27 27 H 0.96998 * 119.99192 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.46829 * 329.99016 * 11 2 1 29 29 H 1.09005 * 109.46707 * 210.00002 * 11 2 1 30 30 H 1.08994 * 109.47140 * 59.99628 * 12 11 2 31 31 H 1.09005 * 109.47231 * 299.99927 * 12 11 2 32 32 H 1.09004 * 109.47561 * 59.99592 * 13 12 11 33 33 H 1.09003 * 109.46984 * 299.99646 * 13 12 11 34 34 H 0.96996 * 119.99710 * 0.02562 * 14 13 12 35 35 H 1.08004 * 119.99557 * 0.02562 * 17 15 14 36 36 H 1.08004 * 119.99694 * 0.02562 * 18 17 15 37 37 H 1.08000 * 126.73736 * 359.97438 * 20 19 18 38 38 H 1.08005 * 126.39726 * 179.97438 * 21 20 19 39 39 H 1.07993 * 125.48720 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3662 5 6 1.5388 2.3401 0.4706 6 7 0.4119 2.2597 1.1460 7 14 2.3159 4.0073 0.1453 8 1 3.5693 3.8264 -0.6302 9 1 1.3716 4.8507 -0.6307 10 1 2.6243 4.6703 1.4378 11 6 2.1974 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4431 13 6 3.2168 -3.0352 -1.4436 14 7 3.4605 -3.4580 -2.8251 15 6 4.1228 -4.6055 -3.0717 16 8 4.5185 -5.2912 -2.1464 17 6 4.3587 -5.0137 -4.4063 18 6 5.0248 -6.1687 -4.6547 19 6 5.2612 -6.5767 -5.9899 20 6 5.9213 -7.7219 -6.3851 21 6 5.9203 -7.7190 -7.7883 22 6 5.2751 -6.5997 -8.1854 23 8 4.8756 -5.9182 -7.1027 24 1 -0.3634 0.0918 1.0236 25 1 -0.3634 0.8406 -0.5912 26 1 -0.3633 -0.9322 -0.4323 27 1 -0.0147 3.0663 1.4751 28 1 1.6083 -2.0286 0.5131 29 1 3.1499 -1.1386 0.5134 30 1 3.0414 -0.9501 -1.9567 31 1 1.5000 -1.8401 -1.9571 32 1 2.6274 -3.7949 -0.9302 33 1 4.1693 -2.9055 -0.9297 34 1 3.1457 -2.9117 -3.5621 35 1 4.0082 -4.4053 -5.2270 36 1 5.3750 -6.7773 -3.8340 37 1 6.3538 -8.4732 -5.7410 38 1 6.3543 -8.4707 -8.4310 39 1 5.1055 -6.3040 -9.2101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231295152.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:56 Heat of formation + Delta-G solvation = -8.063001 kcal Electronic energy + Delta-G solvation = -19970.476874 eV Core-core repulsion = 16687.082984 eV Total energy + Delta-G solvation = -3283.393891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.49701 -40.88761 -37.99210 -36.25983 -35.16198 -34.01065 -33.76203 -31.81031 -29.92771 -27.95610 -27.15460 -25.04012 -23.37009 -22.81724 -22.17401 -21.60132 -20.41281 -18.75534 -18.59213 -17.89861 -17.17527 -17.07657 -16.69732 -16.62386 -15.68534 -15.62379 -15.44584 -14.89554 -14.66249 -14.48486 -13.91936 -13.69730 -13.52722 -13.38516 -13.12173 -13.00815 -12.81661 -12.62418 -12.50398 -12.27881 -12.06958 -11.83085 -11.70642 -11.47732 -11.14006 -10.85002 -10.64061 -10.10902 -8.95273 -8.77464 -7.82194 -5.31775 -0.59174 1.16237 1.46483 1.47444 1.58199 1.71426 2.02627 2.30247 2.42979 2.52492 3.31181 3.66200 3.72862 3.98212 4.07036 4.12814 4.15049 4.23444 4.34957 4.48214 4.66742 4.68219 4.80367 4.86399 4.88687 4.93869 5.02801 5.10197 5.21938 5.25694 5.29760 5.45406 5.51803 5.54238 5.64357 5.71778 6.08796 6.33898 6.56324 7.15962 7.21601 7.88161 8.31907 9.21207 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032416 B = 0.002365 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.566028 B =11836.729011 C =12249.359990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.622 5.622 3 C -0.259 4.259 4 H 0.072 0.928 5 C -0.059 4.059 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.150 3.850 12 C -0.128 4.128 13 C 0.131 3.869 14 N -0.715 5.715 15 C 0.545 3.455 16 O -0.594 6.594 17 C -0.222 4.222 18 C 0.024 3.976 19 C -0.045 4.045 20 C -0.157 4.157 21 C -0.232 4.232 22 C -0.011 4.011 23 O -0.182 6.182 24 H 0.003 0.997 25 H 0.015 0.985 26 H 0.033 0.967 27 H 0.248 0.752 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.414 0.586 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.539 -19.709 -20.423 29.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.345 5.345 3 C -0.389 4.389 4 H 0.089 0.911 5 C -0.254 4.254 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.190 1.190 9 H -0.218 1.218 10 H -0.220 1.220 11 C 0.023 3.977 12 C -0.168 4.168 13 C 0.006 3.994 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.478 6.478 17 C -0.243 4.243 18 C 0.004 3.996 19 C -0.094 4.094 20 C -0.177 4.177 21 C -0.250 4.250 22 C -0.080 4.080 23 O -0.078 6.078 24 H 0.021 0.979 25 H 0.033 0.967 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.250 0.750 35 H 0.164 0.836 36 H 0.176 0.824 37 H 0.190 0.810 38 H 0.196 0.804 39 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 9.530 -19.749 -19.668 29.456 hybrid contribution -0.035 1.289 -0.100 1.294 sum 9.495 -18.460 -19.768 28.665 Atomic orbital electron populations 1.20544 0.82820 0.95981 0.97613 1.44173 1.02170 1.01776 1.86387 1.19557 0.98435 0.86719 1.34219 0.91061 1.25850 0.98750 1.02077 0.98676 1.70251 1.20952 1.27527 1.40114 0.85157 0.78015 0.79922 0.77076 1.18963 1.21755 1.22025 1.20784 0.95762 0.86902 0.94247 1.22155 0.99886 0.94810 0.99962 1.21187 0.99697 0.95823 0.82649 1.45948 1.57254 1.23699 1.09605 1.17361 0.77887 0.80949 0.90117 1.90808 1.53684 1.55333 1.47999 1.21995 1.06072 1.00300 0.95917 1.20732 0.92150 0.94993 0.91761 1.19928 1.07175 0.95842 0.86439 1.22803 1.00536 0.97552 0.96767 1.22198 1.06405 1.01334 0.95089 1.25225 0.98347 0.92542 0.91836 1.84106 1.62345 1.46630 1.14705 0.97851 0.96651 0.94868 0.94316 0.93192 0.93784 0.92244 0.91646 0.91804 0.92320 0.74972 0.83643 0.82381 0.81014 0.80446 0.74071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.76 8.98 127.77 1.15 9.91 16 2 N -0.62 -31.36 2.92 -726.94 -2.12 -33.49 16 3 C -0.26 -14.29 9.65 84.03 0.81 -13.48 16 4 H 0.07 3.80 7.86 -2.91 -0.02 3.78 16 5 C -0.06 -3.34 5.10 84.86 0.43 -2.91 16 6 N -0.94 -56.61 10.71 21.65 0.23 -56.38 16 7 Si 0.97 45.42 29.57 68.60 2.03 47.44 16 8 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 11 C 0.15 5.97 5.64 86.38 0.49 6.46 16 12 C -0.13 -4.09 5.65 30.59 0.17 -3.92 16 13 C 0.13 3.75 5.67 86.38 0.49 4.24 16 14 N -0.71 -17.79 5.55 -472.18 -2.62 -20.41 16 15 C 0.54 14.77 7.56 85.06 0.64 15.41 16 16 O -0.59 -20.48 16.11 -4.61 -0.07 -20.55 16 17 C -0.22 -4.67 9.41 22.48 0.21 -4.46 16 18 C 0.02 0.46 9.39 22.49 0.21 0.67 16 19 C -0.05 -0.79 6.84 23.03 0.16 -0.63 16 20 C -0.16 -2.13 10.90 22.71 0.25 -1.88 16 21 C -0.23 -2.33 10.87 22.06 0.24 -2.09 16 22 C -0.01 -0.11 12.06 67.11 0.81 0.70 16 23 O -0.18 -3.00 10.18 -6.12 -0.06 -3.07 16 24 H 0.00 0.18 7.34 -2.39 -0.02 0.16 16 25 H 0.01 0.80 7.34 -2.38 -0.02 0.79 16 26 H 0.03 1.38 8.03 -2.39 -0.02 1.36 16 27 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.05 1.87 8.07 -2.38 -0.02 1.85 16 29 H 0.04 1.79 8.04 -2.38 -0.02 1.77 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 32 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.41 8.18 8.43 -92.71 -0.78 7.39 16 35 H 0.15 2.49 7.72 -2.91 -0.02 2.47 16 36 H 0.16 3.03 7.46 -2.91 -0.02 3.01 16 37 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 38 H 0.18 0.82 8.06 -2.91 -0.02 0.79 16 39 H 0.24 0.24 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -72.57 339.43 3.70 -68.87 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.26 Total: 9.56 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: 6.06 Total: 8.01 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -4.51 Total: -110.27 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -0.14 Total: -23.61 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.57 3.70 -68.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231295152.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.807 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds