Wall clock time and date at job start Tue Mar 31 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47209 * 2 1 4 4 C 1.34675 * 116.99732 * 179.97438 * 3 2 1 5 5 O 1.21426 * 120.00230 * 0.02562 * 4 3 2 6 6 C 1.48048 * 119.99811 * 179.97438 * 4 3 2 7 7 C 1.39883 * 120.92879 * 0.02562 * 6 4 3 8 8 C 1.38125 * 118.99905 * 179.97438 * 7 6 4 9 9 N 1.31824 * 120.90159 * 359.97173 * 8 7 6 10 10 C 1.31801 * 122.06060 * 0.02791 * 9 8 7 11 11 C 1.50703 * 119.54909 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.47107 * 274.99622 * 11 10 9 13 13 C 1.46902 * 111.00255 * 293.95458 * 12 11 10 14 14 C 1.46901 * 111.00103 * 169.99758 * 12 11 10 15 15 C 1.50696 * 109.47399 * 190.00043 * 14 12 11 16 16 H 1.08005 * 119.99725 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00189 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99790 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47047 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47167 * 119.99895 * 19 17 15 22 22 H 1.48495 * 109.47058 * 239.99959 * 19 17 15 23 23 C 1.38162 * 120.90036 * 0.27018 * 10 9 8 24 24 H 1.09000 * 109.47004 * 300.00568 * 1 2 3 25 25 H 1.09000 * 109.46622 * 59.99826 * 1 2 3 26 26 H 1.08995 * 109.46980 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47333 * 239.99676 * 2 1 3 28 28 H 1.08997 * 109.47122 * 120.00245 * 2 1 3 29 29 H 1.07997 * 120.49693 * 359.97438 * 7 6 4 30 30 H 1.07995 * 119.55020 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47152 * 154.99709 * 11 10 9 32 32 H 1.09001 * 109.46980 * 34.99809 * 11 10 9 33 33 H 1.09005 * 109.46528 * 59.99744 * 13 12 11 34 34 H 1.09000 * 109.46785 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.47044 * 300.00388 * 13 12 11 36 36 H 1.08998 * 109.47407 * 310.00536 * 14 12 11 37 37 H 1.09007 * 109.46608 * 69.99971 * 14 12 11 38 38 H 0.96994 * 119.99598 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.50539 * 179.72551 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9151 2.9134 0.0000 7 6 3.0811 4.0364 -0.0005 8 6 3.6517 5.2942 -0.0005 9 7 4.9615 5.4435 0.0006 10 6 5.7830 4.4128 0.0012 11 6 7.2715 4.6488 0.0018 12 7 7.7369 4.8445 -1.3777 13 6 7.5783 3.6151 -2.1662 14 6 9.1300 5.3097 -1.4024 15 6 9.4939 5.7322 -2.8024 16 1 8.7631 5.6625 -3.5946 17 6 10.7597 6.2078 -3.0720 18 7 11.6493 6.2931 -2.1072 19 14 11.2104 6.7322 -4.8073 20 1 10.0409 6.5399 -5.7020 21 1 11.6027 8.1644 -4.8054 22 1 12.3461 5.9085 -5.2940 23 6 5.2983 3.1190 -0.0050 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0072 3.9216 -0.0010 30 1 3.0162 6.1674 -0.0013 31 1 7.7760 3.7859 0.4366 32 1 7.4982 5.5373 0.5912 33 1 6.5261 3.3315 -2.1891 34 1 7.9300 3.7880 -3.1833 35 1 8.1607 2.8140 -1.7111 36 1 9.2421 6.1573 -0.7263 37 1 9.7886 4.5015 -1.0840 38 1 12.5399 6.6272 -2.2970 39 1 5.9773 2.2792 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233323348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:33 Heat of formation + Delta-G solvation = -45.218492 kcal Electronic energy + Delta-G solvation = -20853.911014 eV Core-core repulsion = 17568.905940 eV Total energy + Delta-G solvation = -3285.005074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.98768 -39.85335 -36.90599 -36.52864 -33.15359 -32.68749 -31.86201 -31.41946 -27.46614 -26.88199 -25.67921 -24.11605 -23.17288 -22.56495 -21.13221 -20.18908 -18.15031 -17.23708 -16.87883 -16.35205 -16.15133 -15.74569 -15.12288 -14.85903 -14.57233 -14.31423 -13.91629 -13.70956 -13.61611 -13.24842 -13.15657 -12.59887 -12.33506 -12.01436 -11.94466 -11.70845 -11.41121 -11.09887 -10.96673 -10.90099 -10.89233 -10.65664 -10.48990 -10.02368 -9.88148 -9.45907 -9.21560 -9.02232 -8.42477 -7.28302 -6.01512 -4.02388 0.47658 1.04713 2.23987 2.39184 3.32787 3.40040 3.45266 3.74014 4.25555 4.32031 4.45451 4.54475 4.58247 4.64741 4.83876 4.88009 4.98817 5.12685 5.25520 5.34932 5.37484 5.43729 5.53751 5.58469 5.71014 5.87130 5.95401 6.06691 6.10902 6.18461 6.32542 6.55726 6.73013 7.26343 7.31347 7.42524 7.79358 8.00478 8.07978 8.16605 8.52420 9.04939 9.61534 11.09508 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.003187 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.562795 B = 8784.098896 C = 9064.506402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.513 3.487 5 O -0.497 6.497 6 C -0.084 4.084 7 C -0.131 4.131 8 C 0.095 3.905 9 N -0.439 5.439 10 C 0.153 3.847 11 C 0.098 3.902 12 N -0.530 5.530 13 C 0.033 3.967 14 C 0.193 3.807 15 C -0.505 4.505 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.899 5.899 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.106 4.106 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.163 0.837 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.077 0.923 35 H 0.015 0.985 36 H 0.034 0.966 37 H -0.006 1.006 38 H 0.261 0.739 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.657 -9.835 6.374 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.269 6.269 4 C 0.357 3.643 5 O -0.385 6.385 6 C -0.093 4.093 7 C -0.151 4.151 8 C -0.062 4.062 9 N -0.148 5.148 10 C 0.015 3.985 11 C -0.031 4.031 12 N -0.255 5.255 13 C -0.116 4.116 14 C 0.069 3.931 15 C -0.544 4.544 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.726 3.274 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.127 4.127 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.164 0.836 30 H 0.181 0.819 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.052 0.948 37 H 0.011 0.989 38 H 0.070 0.930 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -21.208 -8.910 6.190 23.822 hybrid contribution 0.454 -1.390 -0.572 1.570 sum -20.754 -10.299 5.618 23.841 Atomic orbital electron populations 1.21813 0.92350 1.03121 1.03667 1.23090 0.95483 0.79712 1.02903 1.86527 1.23519 1.32726 1.84137 1.21116 0.80720 0.89605 0.72858 1.90848 1.60416 1.42221 1.45005 1.19373 0.94027 0.90376 1.05484 1.22412 1.01323 0.92742 0.98663 1.22873 0.91224 0.96474 0.95676 1.67457 1.04212 1.35173 1.08008 1.21423 0.97157 0.87207 0.92732 1.21016 0.86769 1.01656 0.93659 1.62112 1.26326 1.29494 1.07562 1.22304 0.98569 0.90539 1.00147 1.19780 0.80217 0.94851 0.98275 1.21176 0.96860 1.42052 0.94291 0.91795 1.24984 0.96375 0.95916 0.97372 1.69965 1.04984 1.47033 1.31852 0.86434 0.78299 0.78210 0.84438 1.19677 1.20979 1.21149 1.22208 0.93880 0.99338 0.97224 0.91370 0.91322 0.90072 0.90948 0.91012 0.83617 0.81935 0.93783 0.88951 0.94017 0.90381 0.96697 0.94843 0.98859 0.92971 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.29 37.16 0.38 -0.41 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.72 9.58 -40.43 -0.39 -4.11 16 4 C 0.51 6.64 7.92 34.75 0.28 6.92 16 5 O -0.50 -7.59 16.23 -19.21 -0.31 -7.91 16 6 C -0.08 -1.09 5.91 -104.66 -0.62 -1.71 16 7 C -0.13 -1.44 9.71 -39.01 -0.38 -1.82 16 8 C 0.09 1.15 11.17 -17.60 -0.20 0.95 16 9 N -0.44 -7.04 10.24 -9.53 -0.10 -7.14 16 10 C 0.15 2.51 5.65 -82.63 -0.47 2.05 16 11 C 0.10 1.80 5.28 -4.98 -0.03 1.77 16 12 N -0.53 -11.71 4.74 -245.82 -1.17 -12.88 16 13 C 0.03 0.66 9.02 60.07 0.54 1.21 16 14 C 0.19 5.06 4.72 -4.98 -0.02 5.04 16 15 C -0.51 -14.32 8.46 -34.44 -0.29 -14.61 16 16 H 0.06 1.81 7.12 -52.48 -0.37 1.44 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -26.78 13.29 55.43 0.74 -26.05 16 19 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 C -0.11 -1.55 7.90 -39.01 -0.31 -1.86 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.15 1.18 7.71 -52.49 -0.40 0.78 16 30 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.04 0.75 8.02 -51.93 -0.42 0.34 16 32 H 0.09 1.72 7.93 -51.93 -0.41 1.31 16 33 H 0.04 0.75 6.39 -51.93 -0.33 0.42 16 34 H 0.08 1.68 6.76 -51.93 -0.35 1.33 16 35 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.03 0.93 7.93 -51.93 -0.41 0.52 16 37 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 39 H 0.15 2.11 7.74 -52.49 -0.41 1.71 16 LS Contribution 335.57 15.07 5.06 5.06 Total: -1.00 -32.62 335.57 -7.79 -40.41 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -5.62 Total: -3.92 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.98 Total: -0.29 kcal Atomic # 7 Polarization: -45.54 SS G_CDS: -0.53 Total: -46.07 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: -0.70 Total: -12.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.62 -7.79 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233323348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.804 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds