Wall clock time and date at job start Tue Mar 31 2020 01:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47209 * 2 1 4 4 C 1.34675 * 116.99732 * 179.97438 * 3 2 1 5 5 O 1.21426 * 120.00230 * 0.02562 * 4 3 2 6 6 C 1.48048 * 119.99811 * 179.97438 * 4 3 2 7 7 C 1.39883 * 120.92879 * 0.02562 * 6 4 3 8 8 C 1.38125 * 118.99905 * 179.97438 * 7 6 4 9 9 N 1.31824 * 120.90159 * 359.97173 * 8 7 6 10 10 C 1.31801 * 122.06060 * 0.02791 * 9 8 7 11 11 C 1.50703 * 119.54909 * 179.97438 * 10 9 8 12 12 N 1.46899 * 109.47107 * 274.99622 * 11 10 9 13 13 C 1.46902 * 111.00255 * 293.95458 * 12 11 10 14 14 C 1.46901 * 111.00103 * 169.99758 * 12 11 10 15 15 C 1.50696 * 109.47399 * 190.00043 * 14 12 11 16 16 H 1.08005 * 119.99725 * 0.02562 * 15 14 12 17 17 C 1.37878 * 120.00189 * 180.02562 * 15 14 12 18 18 N 1.31513 * 119.99790 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00051 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47047 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47167 * 119.99895 * 19 17 15 22 22 H 1.48495 * 109.47058 * 239.99959 * 19 17 15 23 23 C 1.38162 * 120.90036 * 0.27018 * 10 9 8 24 24 H 1.09000 * 109.47004 * 300.00568 * 1 2 3 25 25 H 1.09000 * 109.46622 * 59.99826 * 1 2 3 26 26 H 1.08995 * 109.46980 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47333 * 239.99676 * 2 1 3 28 28 H 1.08997 * 109.47122 * 120.00245 * 2 1 3 29 29 H 1.07997 * 120.49693 * 359.97438 * 7 6 4 30 30 H 1.07995 * 119.55020 * 179.97438 * 8 7 6 31 31 H 1.09002 * 109.47152 * 154.99709 * 11 10 9 32 32 H 1.09001 * 109.46980 * 34.99809 * 11 10 9 33 33 H 1.09005 * 109.46528 * 59.99744 * 13 12 11 34 34 H 1.09000 * 109.46785 * 179.97438 * 13 12 11 35 35 H 1.08997 * 109.47044 * 300.00388 * 13 12 11 36 36 H 1.08998 * 109.47407 * 310.00536 * 14 12 11 37 37 H 1.09007 * 109.46608 * 69.99971 * 14 12 11 38 38 H 0.96994 * 119.99598 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.50539 * 179.72551 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3491 1.5453 0.0005 5 8 4.0888 0.5823 0.0005 6 6 3.9151 2.9134 0.0000 7 6 3.0811 4.0364 -0.0005 8 6 3.6517 5.2942 -0.0005 9 7 4.9615 5.4435 0.0006 10 6 5.7830 4.4128 0.0012 11 6 7.2715 4.6488 0.0018 12 7 7.7369 4.8445 -1.3777 13 6 7.5783 3.6151 -2.1662 14 6 9.1300 5.3097 -1.4024 15 6 9.4939 5.7322 -2.8024 16 1 8.7631 5.6625 -3.5946 17 6 10.7597 6.2078 -3.0720 18 7 11.6493 6.2931 -2.1072 19 14 11.2104 6.7322 -4.8073 20 1 10.0409 6.5399 -5.7020 21 1 11.6027 8.1644 -4.8054 22 1 12.3461 5.9085 -5.2940 23 6 5.2983 3.1190 -0.0050 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0072 3.9216 -0.0010 30 1 3.0162 6.1674 -0.0013 31 1 7.7760 3.7859 0.4366 32 1 7.4982 5.5373 0.5912 33 1 6.5261 3.3315 -2.1891 34 1 7.9300 3.7880 -3.1833 35 1 8.1607 2.8140 -1.7111 36 1 9.2421 6.1573 -0.7263 37 1 9.7886 4.5015 -1.0840 38 1 12.5399 6.6272 -2.2970 39 1 5.9773 2.2792 -0.0090 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233323348.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:33 Heat of formation + Delta-G solvation = -66.609005 kcal Electronic energy + Delta-G solvation = -20854.838576 eV Core-core repulsion = 17568.905940 eV Total energy + Delta-G solvation = -3285.932636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.99779 -40.90082 -38.22902 -37.81770 -34.84268 -34.06693 -32.81764 -32.43450 -29.34138 -28.46558 -26.72903 -25.78505 -23.94781 -23.72489 -22.54966 -21.59360 -19.18567 -18.53811 -18.13211 -17.71785 -17.28195 -16.88383 -16.76548 -16.18210 -15.97293 -15.62216 -15.28325 -15.05396 -14.57641 -14.49992 -14.10656 -13.77534 -13.63947 -13.37307 -13.00401 -12.90073 -12.88234 -12.66312 -12.57238 -12.52321 -12.29231 -11.99616 -11.90765 -11.59715 -11.34379 -11.07095 -10.62567 -10.53783 -10.12737 -9.07681 -8.20435 -6.30156 -0.55737 -0.00999 1.36614 1.37847 1.41326 1.42106 1.55744 2.40224 2.64823 3.12242 3.19084 3.36959 3.43697 3.69310 3.83215 3.94105 3.99648 4.05406 4.30158 4.34975 4.35347 4.46513 4.61644 4.62456 4.66176 4.79011 4.83823 4.93507 4.94619 5.01165 5.08372 5.15560 5.26658 5.33924 5.52394 5.63798 6.02244 6.25548 6.47836 6.54222 6.84645 6.95054 7.39012 8.90949 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.003187 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.562795 B = 8784.098896 C = 9064.506402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.345 6.345 4 C 0.518 3.482 5 O -0.527 6.527 6 C -0.091 4.091 7 C -0.103 4.103 8 C 0.097 3.903 9 N -0.471 5.471 10 C 0.135 3.865 11 C 0.100 3.900 12 N -0.540 5.540 13 C 0.041 3.959 14 C 0.209 3.791 15 C -0.523 4.523 16 H 0.061 0.939 17 C 0.002 3.998 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.112 4.112 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.184 0.816 30 H 0.201 0.799 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.018 0.982 36 H 0.008 0.992 37 H -0.031 1.031 38 H 0.265 0.735 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.482 -10.017 5.638 27.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.262 6.262 4 C 0.363 3.637 5 O -0.417 6.417 6 C -0.100 4.100 7 C -0.123 4.123 8 C -0.061 4.061 9 N -0.181 5.181 10 C -0.003 4.003 11 C -0.028 4.028 12 N -0.265 5.265 13 C -0.107 4.107 14 C 0.083 3.917 15 C -0.561 4.561 16 H 0.079 0.921 17 C -0.196 4.196 18 N -0.574 5.574 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.133 4.133 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.119 0.881 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.202 0.798 30 H 0.218 0.782 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.037 0.963 36 H 0.026 0.974 37 H -0.013 1.013 38 H 0.074 0.926 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.061 -9.104 5.463 26.299 hybrid contribution 1.154 -1.371 -0.266 1.812 sum -22.907 -10.475 5.197 25.719 Atomic orbital electron populations 1.21836 0.89834 1.04558 1.04020 1.23421 0.97369 0.78420 1.02886 1.86520 1.21861 1.34365 1.83424 1.21075 0.81363 0.89095 0.72143 1.90839 1.61279 1.43076 1.46543 1.19487 0.93597 0.91371 1.05539 1.22809 1.02883 0.91366 0.95229 1.23518 0.90061 0.98356 0.94146 1.67380 1.06141 1.35549 1.09027 1.20908 0.95752 0.88098 0.95511 1.20948 0.89036 1.01458 0.91392 1.61983 1.23442 1.30871 1.10195 1.22222 0.99908 0.89811 0.98792 1.19419 0.82347 0.93142 0.96831 1.21455 0.97215 1.42371 0.95045 0.92097 1.25902 0.96207 0.95717 1.01796 1.70085 1.05470 1.47681 1.34144 0.85320 0.78191 0.77922 0.79088 1.18906 1.20298 1.20308 1.22065 0.94938 0.98347 0.97906 0.90875 0.91044 0.88115 0.91190 0.90976 0.79826 0.78229 0.93047 0.90084 0.91813 0.92071 0.96320 0.97382 1.01294 0.92623 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.29 71.98 0.74 -0.35 16 2 C 0.05 0.73 6.19 71.98 0.45 1.18 16 3 O -0.35 -6.43 9.58 -55.85 -0.53 -6.96 16 4 C 0.52 12.57 7.92 70.43 0.56 13.13 16 5 O -0.53 -15.80 16.23 20.08 0.33 -15.48 16 6 C -0.09 -2.20 5.91 -19.89 -0.12 -2.32 16 7 C -0.10 -1.90 9.71 22.64 0.22 -1.68 16 8 C 0.10 2.05 11.17 84.67 0.95 3.00 16 9 N -0.47 -14.63 10.24 -184.05 -1.89 -16.51 16 10 C 0.13 4.40 5.65 42.55 0.24 4.64 16 11 C 0.10 3.82 5.28 85.56 0.45 4.28 16 12 N -0.54 -24.62 4.74 -931.63 -4.42 -29.04 16 13 C 0.04 1.68 9.02 127.69 1.15 2.83 16 14 C 0.21 11.42 4.72 85.56 0.40 11.82 16 15 C -0.52 -30.34 8.46 25.60 0.22 -30.12 16 16 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 17 C 0.00 0.10 5.46 84.66 0.46 0.57 16 18 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 19 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 20 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.11 -3.24 7.90 22.64 0.18 -3.06 16 24 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 26 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.07 1.02 8.14 -2.38 -0.02 1.01 16 28 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.18 2.01 7.71 -2.91 -0.02 1.98 16 30 H 0.20 2.63 8.06 -2.91 -0.02 2.61 16 31 H 0.05 1.85 8.02 -2.39 -0.02 1.83 16 32 H 0.08 3.20 7.93 -2.39 -0.02 3.18 16 33 H 0.06 2.30 6.39 -2.38 -0.02 2.29 16 34 H 0.06 2.68 6.76 -2.39 -0.02 2.66 16 35 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.01 0.47 7.93 -2.39 -0.02 0.46 16 37 H -0.03 -1.78 8.12 -2.38 -0.02 -1.80 16 38 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.14 4.13 7.74 -2.91 -0.02 4.10 16 Total: -1.00 -71.88 335.57 2.73 -69.15 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.04 Total: 4.37 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 5.90 Total: 3.91 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -6.02 Total: -102.07 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.21 Total: -22.44 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.88 2.73 -69.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233323348.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.543 kcal (2) G-P(sol) polarization free energy of solvation -71.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds