Wall clock time and date at job start Tue Mar 31 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46502 * 120.00306 * 2 1 4 4 C 1.52998 * 109.47012 * 270.27499 * 3 2 1 5 5 H 1.08991 * 112.74066 * 43.12268 * 4 3 2 6 6 C 1.53497 * 113.52024 * 272.32896 * 4 3 2 7 7 C 1.53752 * 83.26148 * 218.97697 * 6 4 3 8 8 N 1.47064 * 87.88493 * 26.24037 * 7 6 4 9 9 C 1.36937 * 136.05696 * 152.96635 * 8 7 6 10 10 H 1.08001 * 120.00024 * 176.66889 * 9 8 7 11 11 C 1.38809 * 119.99955 * 356.39281 * 9 8 7 12 12 N 1.31617 * 120.00254 * 0.27215 * 11 9 8 13 13 Si 1.86806 * 120.00063 * 180.27718 * 11 9 8 14 14 H 1.48500 * 109.46985 * 59.99526 * 13 11 9 15 15 H 1.48498 * 109.47010 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46985 * 300.00002 * 13 11 9 17 17 C 1.34780 * 120.00056 * 179.97438 * 2 1 3 18 18 O 1.21279 * 120.00345 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99779 * 0.02562 * 17 2 1 20 20 C 1.50701 * 109.46908 * 179.97438 * 19 17 2 21 21 C 1.41384 * 126.57595 * 269.70900 * 20 19 17 22 22 C 1.34519 * 106.83634 * 179.83511 * 21 20 19 23 23 O 1.34298 * 108.41998 * 0.43407 * 22 21 20 24 24 C 1.34302 * 109.48127 * 359.71918 * 23 22 21 25 25 H 1.09010 * 109.46879 * 93.32989 * 1 2 3 26 26 H 1.09002 * 109.47413 * 213.33113 * 1 2 3 27 27 H 1.09002 * 109.47148 * 333.33340 * 1 2 3 28 28 H 1.08999 * 109.47204 * 150.27022 * 3 2 1 29 29 H 1.08997 * 109.47086 * 30.27498 * 3 2 1 30 30 H 1.09009 * 114.20585 * 332.73778 * 6 4 3 31 31 H 1.09004 * 114.20699 * 105.35656 * 6 4 3 32 32 H 1.08992 * 113.46494 * 271.50857 * 7 6 4 33 33 H 1.08998 * 113.55255 * 140.98485 * 7 6 4 34 34 H 0.96998 * 120.00460 * 179.97438 * 12 11 9 35 35 H 1.08997 * 109.46727 * 299.99829 * 19 17 2 36 36 H 1.08998 * 109.46957 * 59.99820 * 19 17 2 37 37 H 1.07995 * 126.58440 * 0.02562 * 21 20 19 38 38 H 1.08001 * 125.78552 * 180.11455 * 22 21 20 39 39 H 1.07996 * 125.79442 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4465 1.7138 -1.4425 5 1 1.5732 1.5815 -2.0809 6 6 3.7370 1.1421 -2.0458 7 6 3.8493 2.5416 -2.6727 8 7 3.0514 3.0502 -1.5469 9 6 2.9235 4.2445 -0.8891 10 1 2.1943 4.3507 -0.0995 11 6 3.7349 5.3168 -1.2333 12 7 4.6236 5.1874 -2.1955 13 14 3.5658 6.9436 -0.3308 14 1 3.8366 6.7382 1.1147 15 1 4.5396 7.9194 -0.8827 16 1 2.1869 7.4662 -0.5067 17 6 2.1389 -1.1672 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4724 0.0005 20 6 2.3646 -3.6178 0.0005 21 6 2.9077 -4.2619 -1.1349 22 6 3.7350 -5.2204 -0.6806 23 8 3.7145 -5.1973 0.6621 24 6 2.8851 -4.2274 1.0807 25 1 -0.3633 -0.0597 -1.0260 26 1 -0.3634 -0.8586 0.5647 27 1 -0.3633 0.9184 0.4612 28 1 3.1520 1.1371 0.5096 29 1 1.6106 2.0271 0.5181 30 1 4.5105 0.9140 -1.3124 31 1 3.5765 0.3400 -2.7663 32 1 3.3456 2.6275 -3.6354 33 1 4.8677 2.9293 -2.6930 34 1 5.1904 5.9368 -2.4363 35 1 0.7583 -2.5298 0.8903 36 1 0.7590 -2.5302 -0.8897 37 1 2.7007 -4.0273 -2.1685 38 1 4.3133 -5.8973 -1.2919 39 1 2.6719 -3.9794 2.1099 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233874728.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:40 Heat of formation + Delta-G solvation = 24.560586 kcal Electronic energy + Delta-G solvation = -21602.939736 eV Core-core repulsion = 18320.960511 eV Total energy + Delta-G solvation = -3281.979226 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.38071 -40.97375 -39.57813 -36.39426 -34.90087 -34.25663 -31.52623 -30.14043 -29.89937 -28.39230 -27.03278 -25.39939 -23.98746 -22.43883 -21.60230 -21.02625 -19.99563 -18.75473 -18.29903 -17.89415 -17.23826 -16.85598 -16.59680 -16.43682 -15.82400 -15.45469 -15.42161 -14.77940 -14.19298 -13.96958 -13.83574 -13.64730 -13.59494 -13.43000 -13.33992 -12.96749 -12.94841 -12.62596 -12.57702 -12.35461 -12.23183 -11.78707 -11.68557 -11.18453 -10.93715 -10.81890 -10.41935 -9.54295 -9.36236 -8.91157 -7.88245 -5.23629 0.93896 1.45037 1.49687 1.55414 1.63549 1.77635 2.22233 2.38571 2.50648 3.31687 3.43870 3.78477 3.88551 3.98258 4.00828 4.19293 4.26363 4.35493 4.41713 4.44619 4.58852 4.67716 4.69097 4.81738 4.83606 4.87566 5.00552 5.02582 5.08115 5.17311 5.22438 5.36060 5.49365 5.53748 5.64558 5.75137 5.93990 6.26075 6.55824 6.89554 7.33981 7.61026 8.62396 9.29104 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.031230 B = 0.003759 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.354091 B = 7446.973241 C = 7797.867607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.613 5.613 3 C 0.131 3.869 4 C 0.139 3.861 5 H 0.054 0.946 6 C -0.128 4.128 7 C 0.143 3.857 8 N -0.629 5.629 9 C -0.226 4.226 10 H 0.091 0.909 11 C -0.071 4.071 12 N -0.957 5.957 13 Si 0.982 3.018 14 H -0.275 1.275 15 H -0.297 1.297 16 H -0.273 1.273 17 C 0.503 3.497 18 O -0.575 6.575 19 C -0.057 4.057 20 C -0.180 4.180 21 C -0.222 4.222 22 C -0.049 4.049 23 O -0.192 6.192 24 C -0.041 4.041 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.020 0.980 33 H 0.038 0.962 34 H 0.247 0.753 35 H 0.133 0.867 36 H 0.123 0.877 37 H 0.153 0.847 38 H 0.231 0.769 39 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.292 -20.460 5.107 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.346 5.346 3 C 0.007 3.993 4 C 0.032 3.968 5 H 0.071 0.929 6 C -0.166 4.166 7 C 0.017 3.983 8 N -0.355 5.355 9 C -0.354 4.354 10 H 0.109 0.891 11 C -0.264 4.264 12 N -0.606 5.606 13 Si 0.810 3.190 14 H -0.201 1.201 15 H -0.223 1.223 16 H -0.199 1.199 17 C 0.293 3.707 18 O -0.453 6.453 19 C -0.096 4.096 20 C -0.182 4.182 21 C -0.241 4.241 22 C -0.115 4.115 23 O -0.088 6.088 24 C -0.108 4.108 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.150 0.850 36 H 0.141 0.859 37 H 0.170 0.830 38 H 0.247 0.753 39 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -10.453 -20.296 5.386 23.457 hybrid contribution 0.284 1.547 -0.251 1.593 sum -10.170 -18.749 5.135 21.939 Atomic orbital electron populations 1.22120 0.76874 1.04861 1.03239 1.47973 1.08513 1.04925 1.73206 1.21399 0.96671 0.84645 0.96631 1.22494 0.94841 0.84131 0.95318 0.92897 1.23347 0.98135 0.95588 0.99572 1.22124 0.96003 0.90122 0.90060 1.45932 1.47177 1.07246 1.35134 1.19307 1.15795 0.87375 1.12883 0.89146 1.25703 0.98589 1.01933 1.00142 1.70044 1.25589 1.31507 1.33436 0.85105 0.77294 0.78681 0.77968 1.20102 1.22341 1.19882 1.21327 0.87909 0.86127 0.75349 1.90713 1.16214 1.87798 1.50613 1.20077 0.96187 0.86125 1.07251 1.20146 1.04156 1.00427 0.93472 1.21981 1.02288 0.99451 1.00394 1.24586 1.03174 1.03221 0.80568 1.84043 1.53700 1.47546 1.23544 1.24292 0.94605 0.91221 1.00725 0.91550 0.87768 0.90584 0.92784 0.90605 0.91915 0.91183 0.96270 0.94344 0.94404 0.84955 0.85932 0.82971 0.75295 0.76211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.23 127.77 1.31 2.43 16 2 N -0.61 -16.36 2.87 -846.74 -2.43 -18.79 16 3 C 0.13 4.78 5.40 86.38 0.47 5.25 16 4 C 0.14 5.86 4.31 41.80 0.18 6.04 16 5 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 6 C -0.13 -5.61 7.47 31.01 0.23 -5.37 16 7 C 0.14 7.42 7.49 83.27 0.62 8.04 16 8 N -0.63 -33.53 3.65 -713.39 -2.60 -36.13 16 9 C -0.23 -12.81 10.55 84.03 0.89 -11.92 16 10 H 0.09 4.75 7.83 -2.91 -0.02 4.73 16 11 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 12 N -0.96 -60.04 11.45 21.65 0.25 -59.79 16 13 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 15 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 C 0.50 14.10 7.67 87.66 0.67 14.77 16 18 O -0.57 -22.11 15.05 -3.02 -0.05 -22.16 16 19 C -0.06 -1.01 4.81 29.10 0.14 -0.87 16 20 C -0.18 -3.95 4.66 -19.94 -0.09 -4.04 16 21 C -0.22 -4.85 10.87 22.19 0.24 -4.61 16 22 C -0.05 -0.96 12.09 66.97 0.81 -0.15 16 23 O -0.19 -4.33 10.65 -2.43 -0.03 -4.36 16 24 C -0.04 -0.86 12.01 66.97 0.80 -0.05 16 25 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.10 0.89 6.58 -2.39 -0.02 0.87 16 27 H 0.08 1.20 7.86 -2.39 -0.02 1.18 16 28 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 29 H 0.08 2.68 7.87 -2.39 -0.02 2.67 16 30 H 0.06 2.99 7.93 -2.38 -0.02 2.97 16 31 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 2.25 6.98 -2.39 -0.02 2.23 16 34 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.13 1.39 7.40 -2.39 -0.02 1.37 16 36 H 0.12 1.63 8.11 -2.39 -0.02 1.61 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.22 3.14 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -79.14 330.33 4.94 -74.20 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: 1.04 Total: 12.82 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 6.74 Total: 5.84 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -4.79 Total: -114.71 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.07 Total: -26.52 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -79.14 4.94 -74.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233874728.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.760 kcal (2) G-P(sol) polarization free energy of solvation -79.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds