Wall clock time and date at job start Tue Mar 31 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99539 * 2 1 4 4 H 1.07997 * 119.99900 * 203.04665 * 3 2 1 5 5 C 1.38814 * 120.00037 * 23.05412 * 3 2 1 6 6 N 1.31611 * 120.00415 * 12.92783 * 5 3 2 7 7 Si 1.86799 * 119.99768 * 192.93626 * 5 3 2 8 8 H 1.48503 * 109.47259 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47437 * 119.99399 * 7 5 3 10 10 H 1.48497 * 109.47082 * 239.99526 * 7 5 3 11 11 C 1.46491 * 120.00528 * 180.02562 * 2 1 3 12 12 C 1.53003 * 109.47208 * 89.99648 * 11 2 1 13 13 C 1.53001 * 109.47317 * 180.02562 * 12 11 2 14 14 N 1.46496 * 109.47206 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99830 * 180.02562 * 14 13 12 16 16 O 1.21587 * 120.00069 * 359.97438 * 15 14 13 17 17 C 1.47538 * 119.99851 * 179.97438 * 15 14 13 18 18 C 1.39703 * 120.18914 * 0.02562 * 17 15 14 19 19 C 1.37787 * 119.90757 * 179.97438 * 18 17 15 20 20 C 1.38554 * 120.29788 * 359.97438 * 19 18 17 21 21 C 1.38047 * 120.39094 * 0.02562 * 20 19 18 22 22 C 1.38710 * 120.08357 * 359.97438 * 21 20 19 23 23 O 1.35654 * 120.14870 * 180.02562 * 22 21 20 24 24 H 1.09007 * 109.47245 * 275.11896 * 1 2 3 25 25 H 1.09001 * 109.47421 * 35.11511 * 1 2 3 26 26 H 1.09004 * 109.47161 * 155.12104 * 1 2 3 27 27 H 0.96996 * 120.00502 * 180.02562 * 6 5 3 28 28 H 1.09009 * 109.46970 * 329.99800 * 11 2 1 29 29 H 1.09001 * 109.47793 * 210.00034 * 11 2 1 30 30 H 1.08996 * 109.47069 * 60.00460 * 12 11 2 31 31 H 1.09002 * 109.46835 * 300.00084 * 12 11 2 32 32 H 1.09000 * 109.47444 * 59.99639 * 13 12 11 33 33 H 1.09011 * 109.46766 * 300.00215 * 13 12 11 34 34 H 0.97002 * 120.00261 * 359.97438 * 14 13 12 35 35 H 1.08000 * 120.05435 * 0.25021 * 18 17 15 36 36 H 1.08003 * 119.85171 * 179.97438 * 19 18 17 37 37 H 1.08000 * 119.80099 * 179.97438 * 20 19 18 38 38 H 1.08003 * 119.95558 * 180.02562 * 21 20 19 39 39 H 0.96712 * 113.99863 * 89.99942 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1649 1.2234 -0.3661 5 6 1.5386 2.3401 0.4708 6 7 0.4118 2.2597 1.1461 7 14 2.3155 4.0074 0.1455 8 1 3.5696 3.8266 -0.6291 9 1 1.3712 4.8508 -0.6305 10 1 2.6239 4.6704 1.4380 11 6 2.1975 -1.2686 -0.0006 12 6 2.4525 -1.7097 -1.4433 13 6 3.2171 -3.0349 -1.4439 14 7 3.4617 -3.4569 -2.8253 15 6 4.1236 -4.6048 -3.0720 16 8 4.5180 -5.2898 -2.1482 17 6 4.3695 -5.0301 -4.4632 18 6 3.9185 -4.2457 -5.5277 19 6 4.1518 -4.6482 -6.8247 20 6 4.8326 -5.8279 -7.0788 21 6 5.2837 -6.6123 -6.0363 22 6 5.0576 -6.2225 -4.7244 23 8 5.5008 -6.9921 -3.6990 24 1 -0.3634 0.0917 1.0236 25 1 -0.3634 0.8406 -0.5911 26 1 -0.3634 -0.9323 -0.4324 27 1 -0.0153 3.0662 1.4747 28 1 1.6085 -2.0285 0.5130 29 1 3.1500 -1.1385 0.5133 30 1 3.0416 -0.9498 -1.9568 31 1 1.5001 -1.8398 -1.9571 32 1 2.6278 -3.7947 -0.9305 33 1 4.1696 -2.9051 -0.9299 34 1 3.1468 -2.9106 -3.5623 35 1 3.3917 -3.3230 -5.3345 36 1 3.8025 -4.0413 -7.6470 37 1 5.0107 -6.1358 -8.0985 38 1 5.8140 -7.5304 -6.2424 39 1 6.3945 -6.7738 -3.4010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234099577.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:52 Heat of formation + Delta-G solvation = -56.158883 kcal Electronic energy + Delta-G solvation = -20657.958664 eV Core-core repulsion = 17372.479179 eV Total energy + Delta-G solvation = -3285.479485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.43829 -39.63448 -37.94537 -37.65150 -36.13452 -33.89113 -32.59539 -31.22696 -30.72605 -27.95779 -27.10168 -24.87293 -23.75435 -23.08915 -22.18146 -21.36776 -19.51306 -18.72929 -18.50279 -17.38408 -16.85447 -16.79452 -16.45466 -16.03908 -15.92603 -15.61215 -15.17852 -15.09689 -14.67188 -14.54575 -14.26534 -13.44189 -13.27177 -13.13549 -13.03824 -12.81479 -12.65799 -12.60216 -12.51106 -12.28446 -12.06858 -11.83114 -11.74468 -11.49021 -10.87266 -10.63239 -10.24504 -9.96245 -9.65893 -8.77722 -7.81985 -5.31884 -0.21613 0.27559 1.47042 1.48039 1.58693 1.85222 2.12536 2.52207 2.74372 3.26798 3.31490 3.64256 3.67908 3.85087 4.10708 4.11561 4.27614 4.36294 4.43303 4.46806 4.64464 4.73027 4.80230 4.85909 4.90012 4.92751 5.23634 5.24476 5.27959 5.33436 5.40636 5.44458 5.49740 5.64396 5.71614 5.80283 6.33732 6.50938 6.79183 7.15914 7.18250 7.87925 8.31874 9.21412 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028808 B = 0.002942 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.715330 B = 9515.207798 C = 9934.586254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.621 5.621 3 C -0.261 4.261 4 H 0.073 0.927 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.970 3.030 8 H -0.264 1.264 9 H -0.290 1.290 10 H -0.294 1.294 11 C 0.150 3.850 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.549 3.451 16 O -0.569 6.569 17 C -0.192 4.192 18 C -0.073 4.073 19 C -0.136 4.136 20 C -0.069 4.069 21 C -0.161 4.161 22 C 0.144 3.856 23 O -0.500 6.500 24 H 0.003 0.997 25 H 0.016 0.984 26 H 0.033 0.967 27 H 0.248 0.752 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.411 0.589 35 H 0.146 0.854 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.178 -15.500 -19.614 26.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.344 5.344 3 C -0.391 4.391 4 H 0.090 0.910 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.798 3.202 8 H -0.189 1.189 9 H -0.217 1.217 10 H -0.221 1.221 11 C 0.024 3.976 12 C -0.168 4.168 13 C 0.008 3.992 14 N -0.367 5.367 15 C 0.338 3.662 16 O -0.450 6.450 17 C -0.195 4.195 18 C -0.092 4.092 19 C -0.154 4.154 20 C -0.087 4.087 21 C -0.180 4.180 22 C 0.098 3.902 23 O -0.312 6.312 24 H 0.021 0.979 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.182 0.818 38 H 0.169 0.831 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.813 -16.111 -18.892 26.347 hybrid contribution 0.348 1.509 0.301 1.577 sum 9.161 -14.602 -18.591 25.353 Atomic orbital electron populations 1.20550 0.82832 0.96003 0.97615 1.44163 1.02148 1.01744 1.86393 1.19576 0.98505 0.86704 1.34364 0.90958 1.25838 0.98695 1.02056 0.98576 1.70244 1.20952 1.27548 1.40076 0.85161 0.78062 0.79909 0.77060 1.18856 1.21727 1.22131 1.20769 0.95754 0.86916 0.94206 1.22161 0.99896 0.94654 1.00049 1.21193 0.99752 0.95885 0.82351 1.45919 1.57678 1.23549 1.09594 1.18553 0.77806 0.80695 0.89164 1.90768 1.52590 1.54712 1.46904 1.20454 1.07991 0.98154 0.92946 1.21548 0.96706 0.98691 0.92221 1.21536 0.99437 0.97732 0.96670 1.21692 0.93666 0.93053 1.00328 1.21701 1.03231 1.02353 0.90686 1.18867 0.94940 0.88142 0.88247 1.84702 1.38046 1.57684 1.50816 0.97901 0.96545 0.94902 0.94314 0.93356 0.93776 0.91971 0.91582 0.92094 0.92230 0.75156 0.83592 0.82056 0.81754 0.83069 0.73502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.68 8.98 127.77 1.15 9.83 16 2 N -0.62 -31.07 2.92 -726.93 -2.12 -33.19 16 3 C -0.26 -14.27 9.65 84.03 0.81 -13.46 16 4 H 0.07 3.81 7.86 -2.91 -0.02 3.78 16 5 C -0.06 -3.20 5.10 84.86 0.43 -2.76 16 6 N -0.94 -56.20 10.71 21.65 0.23 -55.97 16 7 Si 0.97 44.88 29.57 68.60 2.03 46.91 16 8 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 9 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 10 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 11 C 0.15 5.95 5.64 86.38 0.49 6.44 16 12 C -0.13 -4.01 5.65 30.60 0.17 -3.84 16 13 C 0.13 3.80 5.67 86.38 0.49 4.29 16 14 N -0.71 -17.97 5.51 -466.26 -2.57 -20.54 16 15 C 0.55 15.73 7.76 86.70 0.67 16.41 16 16 O -0.57 -20.63 15.16 16.93 0.26 -20.37 16 17 C -0.19 -4.33 5.89 -20.01 -0.12 -4.44 16 18 C -0.07 -1.14 9.53 22.52 0.21 -0.92 16 19 C -0.14 -1.47 10.02 22.24 0.22 -1.25 16 20 C -0.07 -0.70 10.03 22.30 0.22 -0.48 16 21 C -0.16 -2.33 9.98 22.34 0.22 -2.11 16 22 C 0.14 3.10 6.72 22.84 0.15 3.26 16 23 O -0.50 -11.99 11.58 -68.77 -0.80 -12.78 16 24 H 0.00 0.15 7.34 -2.38 -0.02 0.13 16 25 H 0.02 0.85 7.34 -2.39 -0.02 0.84 16 26 H 0.03 1.36 8.03 -2.39 -0.02 1.34 16 27 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.05 1.81 8.07 -2.38 -0.02 1.79 16 29 H 0.04 1.78 8.04 -2.39 -0.02 1.76 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.41 8.00 6.50 -92.71 -0.60 7.40 16 35 H 0.15 1.70 6.40 -2.91 -0.02 1.68 16 36 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.41 6.78 9.06 -74.05 -0.67 6.11 16 Total: -1.00 -74.56 331.11 1.96 -72.60 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.21 Total: 12.38 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.13 Total: 10.96 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.46 Total: -109.70 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.54 Total: -33.15 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -74.56 1.96 -72.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234099577.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.440 kcal (2) G-P(sol) polarization free energy of solvation -74.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds