Wall clock time and date at job start Tue Mar 31 2020 01:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45190 * 109.47235 * 2 1 4 4 C 1.34897 * 116.99999 * 179.97438 * 3 2 1 5 5 O 1.21626 * 119.99764 * 359.97438 * 4 3 2 6 6 C 1.46490 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.37994 * 126.26239 * 180.33556 * 6 4 3 8 8 C 1.39797 * 106.96829 * 180.11313 * 7 6 4 9 9 C 1.50702 * 126.08263 * 179.83615 * 8 7 6 10 10 N 1.46902 * 109.47215 * 269.71925 * 9 8 7 11 11 C 1.47961 * 111.00005 * 169.99576 * 10 9 8 12 12 C 1.53934 * 86.17939 * 137.58072 * 11 10 9 13 13 C 1.50703 * 113.73399 * 221.81705 * 12 11 10 14 14 H 1.07999 * 119.99920 * 358.09577 * 13 12 11 15 15 C 1.37877 * 119.99669 * 178.10223 * 13 12 11 16 16 N 1.31510 * 120.00506 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47014 * 59.99839 * 17 15 13 19 19 H 1.48503 * 109.47043 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47160 * 300.00101 * 17 15 13 21 21 C 1.48296 * 111.00409 * 269.34877 * 10 9 8 22 22 C 1.35486 * 107.84100 * 359.57472 * 8 7 6 23 23 N 1.34957 * 108.98475 * 0.26591 * 22 8 7 24 24 H 0.97003 * 125.62998 * 180.02562 * 23 22 8 25 25 H 1.08996 * 109.47047 * 59.99737 * 1 2 3 26 26 H 1.08993 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46724 * 299.99686 * 1 2 3 28 28 H 1.09002 * 109.46576 * 239.99542 * 2 1 3 29 29 H 1.09006 * 109.46919 * 120.00172 * 2 1 3 30 30 H 1.08004 * 126.52114 * 359.94801 * 7 6 4 31 31 H 1.09001 * 109.47251 * 149.71501 * 9 8 7 32 32 H 1.09004 * 109.46551 * 29.71867 * 9 8 7 33 33 H 1.09007 * 113.75652 * 23.26342 * 11 10 9 34 34 H 1.08992 * 113.86038 * 251.91266 * 11 10 9 35 35 H 1.09002 * 113.73279 * 90.64057 * 12 11 10 36 36 H 0.96995 * 120.00309 * 180.02562 * 16 15 13 37 37 H 1.09001 * 113.86054 * 108.14174 * 21 10 9 38 38 H 1.09000 * 113.76062 * 336.68481 * 21 10 9 39 39 H 1.08007 * 125.50861 * 180.25912 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0922 0.5810 0.0015 6 6 3.9114 2.8992 0.0011 7 6 5.2516 3.2281 -0.0048 8 6 5.3291 4.6239 0.0010 9 6 6.5944 5.4425 0.0011 10 7 7.0056 5.7083 1.3862 11 6 8.3611 6.2995 1.4327 12 6 7.7966 7.2532 2.5011 13 6 8.2553 8.6800 2.3438 14 1 8.9438 8.9419 1.5540 15 6 7.7961 9.6510 3.2083 16 7 6.9582 9.3320 4.1704 17 14 8.3653 11.4195 3.0137 18 1 7.9748 11.9204 1.6713 19 1 7.7309 12.2616 4.0596 20 1 9.8422 11.4826 3.1552 21 6 6.4148 6.9748 1.8823 22 6 4.0644 5.1099 0.0006 23 7 3.1968 4.0762 0.0007 24 1 2.2296 4.1502 0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 6.0826 2.5384 -0.0099 31 1 6.4161 6.3872 -0.5126 32 1 7.3829 4.8927 -0.5128 33 1 8.6544 6.7988 0.5092 34 1 9.1256 5.6204 1.8101 35 1 7.9035 6.8825 3.5206 36 1 6.6349 10.0152 4.7783 37 1 5.6241 6.8336 2.6191 38 1 6.1401 7.6712 1.0901 39 1 3.7943 6.1557 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234925150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:16 Heat of formation + Delta-G solvation = -12.134296 kcal Electronic energy + Delta-G solvation = -20708.918444 eV Core-core repulsion = 17425.348009 eV Total energy + Delta-G solvation = -3283.570435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38157 -39.98256 -38.45105 -36.67236 -33.03351 -32.17400 -31.76707 -29.84396 -28.30064 -25.53671 -24.89690 -24.24869 -22.59949 -22.31401 -20.30229 -19.68317 -18.50015 -18.29682 -17.14910 -16.76456 -16.48320 -15.50871 -14.93137 -14.61852 -14.42978 -14.06364 -13.72270 -13.60538 -13.52468 -13.44745 -13.09985 -12.53864 -12.22188 -11.93706 -11.91830 -11.82102 -11.55455 -11.08459 -10.93735 -10.80137 -10.76004 -10.58834 -10.22143 -9.72953 -9.31263 -8.97570 -8.69892 -8.42654 -8.12607 -7.77629 -6.03019 -4.07485 1.23599 2.43353 2.71294 3.16677 3.18418 3.30424 3.35702 3.37971 4.41677 4.59211 4.60278 4.72578 4.94178 5.05711 5.16205 5.26932 5.31874 5.38978 5.40572 5.42284 5.59752 5.77562 5.98632 6.10603 6.17776 6.22295 6.32038 6.45393 6.54901 6.71442 6.82289 6.86243 6.97496 7.20122 7.33644 7.41317 7.66735 7.76209 7.95087 8.16918 8.40178 8.95011 9.57119 11.06262 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.002941 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.403699 B = 9518.641761 C = 9848.227586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.064 3.936 3 O -0.366 6.366 4 C 0.540 3.460 5 O -0.505 6.505 6 C -0.063 4.063 7 C -0.070 4.070 8 C -0.154 4.154 9 C 0.089 3.911 10 N -0.486 5.486 11 C -0.003 4.003 12 C 0.038 3.962 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.890 3.110 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.015 3.985 22 C 0.048 3.952 23 N -0.529 5.529 24 H 0.421 0.579 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.149 0.851 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 -13.296 -9.916 20.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.284 6.284 4 C 0.386 3.614 5 O -0.393 6.393 6 C -0.173 4.173 7 C -0.097 4.097 8 C -0.160 4.160 9 C -0.040 4.040 10 N -0.208 5.208 11 C -0.132 4.132 12 C 0.019 3.981 13 C -0.556 4.556 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.113 4.113 22 C -0.090 4.090 23 N -0.124 5.124 24 H 0.258 0.742 25 H 0.085 0.915 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.166 0.834 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -12.545 -14.217 -9.436 21.179 hybrid contribution -0.182 1.623 -0.546 1.722 sum -12.727 -12.594 -9.983 20.500 Atomic orbital electron populations 1.21815 0.92611 1.03045 1.03495 1.23011 0.95215 0.79903 1.02794 1.86552 1.24207 1.32723 1.84960 1.19815 0.80239 0.88285 0.73011 1.90892 1.60305 1.41044 1.47080 1.19154 0.91631 0.83059 1.23415 1.21240 0.93108 0.95355 1.00008 1.19404 0.94209 0.93175 1.09222 1.20955 0.92853 0.97046 0.93129 1.68594 1.05088 1.31062 1.16071 1.24061 0.91576 0.97112 1.00407 1.20296 0.90097 0.93413 0.94273 1.21077 1.27604 0.92432 1.14477 0.92536 1.25009 0.94915 0.98852 0.94893 1.69958 1.31697 1.33655 1.17148 0.86703 0.79059 0.84774 0.77705 1.20304 1.21314 1.20184 1.24127 1.00968 0.87688 0.98541 1.21919 0.89366 0.93004 1.04719 1.41729 1.09154 1.05096 1.56402 0.74187 0.91531 0.90134 0.91440 0.91138 0.91048 0.83372 0.93625 0.91181 0.92758 0.91676 0.92450 0.92891 0.91687 0.92889 0.80969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.57 6.20 37.16 0.23 0.80 16 3 O -0.37 -4.21 10.23 -41.03 -0.42 -4.63 16 4 C 0.54 7.58 7.93 34.05 0.27 7.85 16 5 O -0.50 -8.24 16.68 -19.36 -0.32 -8.56 16 6 C -0.06 -0.89 7.10 -82.00 -0.58 -1.47 16 7 C -0.07 -1.07 10.60 -39.09 -0.41 -1.48 16 8 C -0.15 -2.37 5.67 -105.02 -0.60 -2.96 16 9 C 0.09 1.49 5.28 -4.97 -0.03 1.46 16 10 N -0.49 -9.79 6.15 -239.49 -1.47 -11.26 16 11 C 0.00 -0.06 7.50 -2.76 -0.02 -0.08 16 12 C 0.04 0.95 3.60 -90.84 -0.33 0.63 16 13 C -0.52 -13.93 8.77 -34.44 -0.30 -14.24 16 14 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 17 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.02 0.35 7.53 -2.57 -0.02 0.33 16 22 C 0.05 0.63 11.78 -17.16 -0.20 0.43 16 23 N -0.53 -6.20 6.07 -9.53 -0.06 -6.26 16 24 H 0.42 3.63 8.96 -40.82 -0.37 3.27 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.15 2.22 8.06 -52.48 -0.42 1.79 16 31 H 0.05 0.75 7.38 -51.93 -0.38 0.36 16 32 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 33 H 0.05 1.09 7.88 -51.92 -0.41 0.69 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 38 H 0.05 1.18 7.43 -51.93 -0.39 0.79 16 39 H 0.17 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -31.10 338.09 -8.90 -40.00 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.74 Total: 1.99 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -1.70 Total: -7.56 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.79 Total: -42.17 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.74 Total: -13.20 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.10 -8.90 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234925150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.867 kcal (2) G-P(sol) polarization free energy of solvation -31.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds