Wall clock time and date at job start Tue Mar 31 2020 01:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45190 * 109.47235 * 2 1 4 4 C 1.34897 * 116.99999 * 179.97438 * 3 2 1 5 5 O 1.21626 * 119.99764 * 359.97438 * 4 3 2 6 6 C 1.46490 * 120.00187 * 180.02562 * 4 3 2 7 7 C 1.37994 * 126.26239 * 180.33556 * 6 4 3 8 8 C 1.39797 * 106.96829 * 180.11313 * 7 6 4 9 9 C 1.50702 * 126.08263 * 179.83615 * 8 7 6 10 10 N 1.46902 * 109.47215 * 269.71925 * 9 8 7 11 11 C 1.47961 * 111.00005 * 169.99576 * 10 9 8 12 12 C 1.53934 * 86.17939 * 137.58072 * 11 10 9 13 13 C 1.50703 * 113.73399 * 221.81705 * 12 11 10 14 14 H 1.07999 * 119.99920 * 358.09577 * 13 12 11 15 15 C 1.37877 * 119.99669 * 178.10223 * 13 12 11 16 16 N 1.31510 * 120.00506 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99624 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47014 * 59.99839 * 17 15 13 19 19 H 1.48503 * 109.47043 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47160 * 300.00101 * 17 15 13 21 21 C 1.48296 * 111.00409 * 269.34877 * 10 9 8 22 22 C 1.35486 * 107.84100 * 359.57472 * 8 7 6 23 23 N 1.34957 * 108.98475 * 0.26591 * 22 8 7 24 24 H 0.97003 * 125.62998 * 180.02562 * 23 22 8 25 25 H 1.08996 * 109.47047 * 59.99737 * 1 2 3 26 26 H 1.08993 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46724 * 299.99686 * 1 2 3 28 28 H 1.09002 * 109.46576 * 239.99542 * 2 1 3 29 29 H 1.09006 * 109.46919 * 120.00172 * 2 1 3 30 30 H 1.08004 * 126.52114 * 359.94801 * 7 6 4 31 31 H 1.09001 * 109.47251 * 149.71501 * 9 8 7 32 32 H 1.09004 * 109.46551 * 29.71867 * 9 8 7 33 33 H 1.09007 * 113.75652 * 23.26342 * 11 10 9 34 34 H 1.08992 * 113.86038 * 251.91266 * 11 10 9 35 35 H 1.09002 * 113.73279 * 90.64057 * 12 11 10 36 36 H 0.96995 * 120.00309 * 180.02562 * 16 15 13 37 37 H 1.09001 * 113.86054 * 108.14174 * 21 10 9 38 38 H 1.09000 * 113.76062 * 336.68481 * 21 10 9 39 39 H 1.08007 * 125.50861 * 180.25912 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3514 1.5456 0.0005 5 8 4.0922 0.5810 0.0015 6 6 3.9114 2.8992 0.0011 7 6 5.2516 3.2281 -0.0048 8 6 5.3291 4.6239 0.0010 9 6 6.5944 5.4425 0.0011 10 7 7.0056 5.7083 1.3862 11 6 8.3611 6.2995 1.4327 12 6 7.7966 7.2532 2.5011 13 6 8.2553 8.6800 2.3438 14 1 8.9438 8.9419 1.5540 15 6 7.7961 9.6510 3.2083 16 7 6.9582 9.3320 4.1704 17 14 8.3653 11.4195 3.0137 18 1 7.9748 11.9204 1.6713 19 1 7.7309 12.2616 4.0596 20 1 9.8422 11.4826 3.1552 21 6 6.4148 6.9748 1.8823 22 6 4.0644 5.1099 0.0006 23 7 3.1968 4.0762 0.0007 24 1 2.2296 4.1502 0.0001 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 6.0826 2.5384 -0.0099 31 1 6.4161 6.3872 -0.5126 32 1 7.3829 4.8927 -0.5128 33 1 8.6544 6.7988 0.5092 34 1 9.1256 5.6204 1.8101 35 1 7.9035 6.8825 3.5206 36 1 6.6349 10.0152 4.7783 37 1 5.6241 6.8336 2.6191 38 1 6.1401 7.6712 1.0901 39 1 3.7943 6.1557 0.0003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234925150.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:15 Heat of formation + Delta-G solvation = -32.279701 kcal Electronic energy + Delta-G solvation = -20709.792014 eV Core-core repulsion = 17425.348009 eV Total energy + Delta-G solvation = -3284.444005 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.46167 -41.03144 -40.12679 -37.69253 -34.84093 -33.45858 -32.64811 -31.00692 -29.80408 -27.26526 -26.61244 -25.25127 -23.94381 -23.41057 -21.37613 -20.77130 -20.33450 -19.46735 -18.44243 -18.15065 -17.68199 -16.68719 -16.53861 -16.21239 -15.78516 -15.39550 -15.14954 -14.79120 -14.58042 -14.49068 -13.88015 -13.79669 -13.65887 -13.29324 -13.12953 -12.98481 -12.92958 -12.73958 -12.57180 -12.35973 -11.89336 -11.85580 -11.59479 -11.53369 -11.13699 -10.87849 -10.47925 -9.85990 -9.47573 -9.23113 -8.09958 -6.21287 0.14752 1.45817 1.47169 1.49728 1.54738 1.59553 2.05023 2.19731 2.46211 3.19590 3.48972 3.76255 3.97991 4.04444 4.06574 4.13921 4.28019 4.31804 4.40292 4.53406 4.60331 4.73238 4.78071 4.87588 4.89595 4.97402 4.98950 5.06991 5.08972 5.14957 5.33314 5.34381 5.61085 5.68524 5.69216 5.90648 5.91702 6.35921 6.47945 6.52706 6.62865 6.87692 7.46838 8.99070 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.037911 B = 0.002941 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.403699 B = 9518.641761 C = 9848.227586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.543 3.457 5 O -0.535 6.535 6 C -0.070 4.070 7 C -0.087 4.087 8 C -0.179 4.179 9 C 0.092 3.908 10 N -0.488 5.488 11 C 0.011 3.989 12 C 0.018 3.982 13 C -0.530 4.530 14 H 0.059 0.941 15 C 0.014 3.986 16 N -0.922 5.922 17 Si 0.956 3.044 18 H -0.267 1.267 19 H -0.287 1.287 20 H -0.272 1.272 21 C 0.032 3.968 22 C 0.062 3.938 23 N -0.510 5.510 24 H 0.437 0.563 25 H 0.070 0.930 26 H 0.102 0.898 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.143 0.857 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.019 0.981 36 H 0.261 0.739 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 -12.927 -11.279 21.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.391 3.609 5 O -0.425 6.425 6 C -0.181 4.181 7 C -0.114 4.114 8 C -0.185 4.185 9 C -0.036 4.036 10 N -0.211 5.211 11 C -0.118 4.118 12 C -0.002 4.002 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.185 4.185 16 N -0.561 5.561 17 Si 0.781 3.219 18 H -0.192 1.192 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.097 4.097 22 C -0.078 4.078 23 N -0.106 5.106 24 H 0.278 0.722 25 H 0.090 0.910 26 H 0.121 0.879 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.161 0.839 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.677 -13.860 -10.817 22.275 hybrid contribution 0.115 1.420 -0.125 1.431 sum -13.562 -12.440 -10.943 21.410 Atomic orbital electron populations 1.21834 0.90050 1.04587 1.03746 1.23354 0.97162 0.78550 1.02820 1.86551 1.22588 1.34461 1.84293 1.19819 0.80888 0.87890 0.72335 1.90874 1.61166 1.41897 1.48593 1.19142 0.91583 0.83806 1.23532 1.21308 0.93781 0.95529 1.00826 1.19344 0.94606 0.93123 1.11452 1.20935 0.94011 0.97779 0.90886 1.68539 1.04257 1.29454 1.18837 1.23929 0.92263 0.96215 0.99365 1.20286 0.92789 0.93532 0.93545 1.21419 1.27424 0.93541 1.14477 0.92235 1.25804 0.95023 1.03042 0.94606 1.70090 1.33027 1.34900 1.18076 0.85653 0.78607 0.79693 0.77934 1.19213 1.21266 1.19694 1.23829 0.98969 0.88892 0.98051 1.22221 0.88790 0.94076 1.02716 1.41685 1.09952 1.04064 1.54868 0.72227 0.91046 0.87941 0.91366 0.90937 0.91346 0.83927 0.92869 0.90101 0.91555 0.90843 0.96293 0.92969 0.93475 0.92493 0.78661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.29 71.98 0.74 -0.66 16 2 C 0.05 0.89 6.20 71.98 0.45 1.34 16 3 O -0.36 -7.85 10.23 -58.12 -0.59 -8.45 16 4 C 0.54 14.90 7.93 69.97 0.55 15.46 16 5 O -0.53 -17.49 16.68 19.43 0.32 -17.16 16 6 C -0.07 -1.91 7.10 40.32 0.29 -1.62 16 7 C -0.09 -2.63 10.60 22.59 0.24 -2.39 16 8 C -0.18 -5.28 5.67 -20.12 -0.11 -5.39 16 9 C 0.09 2.95 5.28 85.56 0.45 3.41 16 10 N -0.49 -19.38 6.15 -911.60 -5.61 -24.99 16 11 C 0.01 0.45 7.50 86.41 0.65 1.09 16 12 C 0.02 0.89 3.60 -10.89 -0.04 0.85 16 13 C -0.53 -28.57 8.77 25.60 0.22 -28.35 16 14 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.79 5.46 84.66 0.46 1.25 16 16 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 17 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 18 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 19 H -0.29 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 C 0.03 1.42 7.53 86.34 0.65 2.07 16 22 C 0.06 1.49 11.78 83.58 0.98 2.47 16 23 N -0.51 -10.92 6.07 -184.05 -1.12 -12.04 16 24 H 0.44 6.43 8.96 -92.71 -0.83 5.59 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.05 1.63 7.38 -2.39 -0.02 1.61 16 32 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 33 H 0.07 2.57 7.88 -2.38 -0.02 2.55 16 34 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 37 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.06 2.49 7.43 -2.39 -0.02 2.47 16 39 H 0.20 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -66.94 338.09 1.07 -65.86 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.22 Total: 15.91 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 5.54 Total: -10.48 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -6.44 Total: -90.26 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: -0.27 Total: -25.61 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -66.94 1.07 -65.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234925150.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.585 kcal (2) G-P(sol) polarization free energy of solvation -66.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds