Wall clock time and date at job start Tue Mar 31 2020 00:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46908 * 109.46996 * 2 1 4 4 C 1.46897 * 110.99863 * 164.08590 * 3 2 1 5 5 C 1.50702 * 109.47117 * 293.95524 * 4 3 2 6 6 H 1.08001 * 119.99917 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99808 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99795 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99754 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47405 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47458 * 120.00021 * 9 7 5 12 12 H 1.48505 * 109.47046 * 239.99917 * 9 7 5 13 13 C 1.46903 * 110.99943 * 288.04283 * 3 2 1 14 14 C 1.50692 * 109.47018 * 160.03984 * 13 3 2 15 15 C 1.38178 * 119.54883 * 95.02669 * 14 13 3 16 16 C 1.39845 * 118.99135 * 179.71957 * 15 14 13 17 17 C 1.48047 * 120.92857 * 180.30495 * 16 15 14 18 18 O 1.21428 * 119.99713 * 0.23842 * 17 16 15 19 19 O 1.34662 * 120.00475 * 180.24275 * 17 16 15 20 20 C 1.45200 * 117.00383 * 179.97438 * 19 17 16 21 21 C 1.39880 * 118.14324 * 0.53796 * 16 15 14 22 22 C 1.38127 * 118.99896 * 359.74100 * 21 16 15 23 23 N 1.31800 * 119.55298 * 275.30040 * 14 13 3 24 24 H 1.09008 * 109.46994 * 299.13345 * 1 2 3 25 25 H 1.09000 * 109.47342 * 59.13262 * 1 2 3 26 26 H 1.09000 * 109.47147 * 179.14161 * 1 2 3 27 27 H 1.08999 * 109.46781 * 240.00636 * 2 1 3 28 28 H 1.08993 * 109.47289 * 120.00135 * 2 1 3 29 29 H 1.09002 * 109.46964 * 173.95646 * 4 3 2 30 30 H 1.09004 * 109.47071 * 53.95197 * 4 3 2 31 31 H 0.97000 * 119.99567 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46391 * 280.03886 * 13 3 2 33 33 H 1.09000 * 109.47148 * 40.03836 * 13 3 2 34 34 H 1.07994 * 120.50216 * 359.97438 * 15 14 13 35 35 H 1.09000 * 109.47051 * 180.02562 * 20 19 17 36 36 H 1.08993 * 109.47235 * 299.99719 * 20 19 17 37 37 H 1.08999 * 109.46839 * 60.00263 * 20 19 17 38 38 H 1.08003 * 120.49750 * 179.76335 * 21 16 15 39 39 H 1.08002 * 119.54698 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4385 1.4418 0.3760 5 6 3.5960 1.0058 1.8100 6 1 2.7287 0.7160 2.3846 7 6 4.8472 0.9779 2.3886 8 7 5.9032 1.3313 1.6889 9 14 5.0425 0.4368 4.1658 10 1 3.7116 0.0926 4.7275 11 1 5.9287 -0.7532 4.2265 12 1 5.6423 1.5415 4.9565 13 6 1.7946 2.0230 -1.3040 14 6 1.8382 3.5208 -1.1446 15 6 3.0187 4.1976 -1.3850 16 6 3.0444 5.5882 -1.2393 17 6 4.2841 6.3570 -1.4924 18 8 5.2963 5.7808 -1.8358 19 8 4.2892 7.6952 -1.3417 20 6 5.5399 8.3836 -1.6063 21 6 1.8675 6.2320 -0.8430 22 6 0.7337 5.4758 -0.6181 23 7 0.7513 4.1669 -0.7727 24 1 -0.3633 0.5004 0.8977 25 1 -0.3634 0.5272 -0.8821 26 1 -0.3633 -1.0275 -0.0154 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8034 2.4629 0.2646 30 1 4.0126 0.7781 -0.2706 31 1 6.7835 1.3113 2.0959 32 1 2.5717 1.7089 -2.0009 33 1 0.8192 1.7269 -1.6899 34 1 3.9068 3.6613 -1.6848 35 1 5.4063 9.4537 -1.4476 36 1 6.3101 8.0100 -0.9316 37 1 5.8423 8.2039 -2.6380 38 1 1.8456 7.3042 -0.7151 39 1 -0.1797 5.9637 -0.3114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235203227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:26 Heat of formation + Delta-G solvation = -42.800228 kcal Electronic energy + Delta-G solvation = -21543.489007 eV Core-core repulsion = 18258.588798 eV Total energy + Delta-G solvation = -3284.900210 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72048 -39.59870 -36.87029 -36.46884 -32.87461 -32.54166 -31.86247 -29.70618 -28.03514 -27.45856 -25.15426 -24.35995 -22.56516 -22.32501 -20.93653 -19.73968 -17.88149 -17.14962 -16.45389 -16.39215 -15.89510 -15.57050 -15.05003 -14.69090 -14.60386 -13.97552 -13.74704 -13.54641 -13.50826 -13.01437 -12.70278 -12.39078 -12.17989 -12.00797 -11.62973 -11.43603 -11.10765 -10.96773 -10.88523 -10.71700 -10.67115 -10.48822 -10.13902 -9.83692 -9.77401 -9.30116 -9.14848 -8.79703 -8.42403 -7.26454 -6.00881 -4.01987 0.72258 1.27819 2.54539 2.65307 3.31778 3.39263 3.44294 3.92832 4.44765 4.49672 4.58555 4.84840 4.99043 5.07848 5.08877 5.12696 5.23623 5.34815 5.38708 5.62144 5.65042 5.78951 5.90557 5.99259 6.04657 6.08941 6.15085 6.16773 6.30936 6.43370 6.73759 6.77300 6.83754 7.28197 7.33392 7.68596 7.81109 8.08159 8.16579 8.21973 8.53948 9.05593 9.61839 11.09777 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.005898 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.932743 B = 4746.531290 C = 6262.084649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.528 5.528 4 C 0.188 3.812 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.097 3.903 14 C 0.155 3.845 15 C -0.092 4.092 16 C -0.081 4.081 17 C 0.509 3.491 18 O -0.490 6.490 19 O -0.355 6.355 20 C 0.036 3.964 21 C -0.130 4.130 22 C 0.089 3.911 23 N -0.443 5.443 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.019 0.981 28 H 0.088 0.912 29 H 0.032 0.968 30 H -0.008 1.008 31 H 0.260 0.740 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.145 0.855 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.197 10.795 -7.972 15.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 N -0.253 5.253 4 C 0.063 3.937 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.031 4.031 14 C 0.016 3.984 15 C -0.113 4.113 16 C -0.090 4.090 17 C 0.353 3.647 18 O -0.376 6.376 19 O -0.272 6.272 20 C -0.057 4.057 21 C -0.151 4.151 22 C -0.068 4.068 23 N -0.153 5.153 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.037 0.963 28 H 0.106 0.894 29 H 0.050 0.950 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.166 0.834 35 H 0.120 0.880 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.162 0.838 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.673 10.447 -7.560 15.006 hybrid contribution 1.872 -0.003 0.296 1.895 sum -5.801 10.445 -7.264 13.982 Atomic orbital electron populations 1.21806 0.96411 1.00007 1.01928 1.21965 0.94254 0.89608 1.01089 1.62052 1.22983 1.16259 1.24043 1.19850 0.80701 0.97048 0.96142 1.21172 0.92846 1.43937 0.96516 0.91751 1.24989 0.95892 0.95650 0.98084 1.69973 0.98613 1.48429 1.36506 0.86475 0.78133 0.78165 0.84872 1.19612 1.21090 1.21110 1.20958 1.01607 0.87525 0.93055 1.21203 0.87618 0.96854 0.92706 1.22241 0.99983 0.92417 0.96620 1.19350 0.91885 0.93412 1.04400 1.21159 0.88359 0.80952 0.74239 1.90876 1.34131 1.70440 1.42187 1.86509 1.38759 1.20916 1.81011 1.23295 0.83939 0.96503 1.01984 1.22365 0.92673 1.01830 0.98201 1.22746 0.97821 0.89438 0.96774 1.67350 1.29953 1.09601 1.08433 0.92198 0.93438 0.93475 0.96274 0.89404 0.95007 0.98979 0.93005 0.93665 0.89674 0.83367 0.87957 0.91565 0.91802 0.83756 0.82194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.99 37.16 0.37 -1.91 16 2 C 0.06 1.13 5.52 -3.82 -0.02 1.11 16 3 N -0.53 -11.42 4.37 -237.51 -1.04 -12.46 16 4 C 0.19 4.88 4.54 -4.98 -0.02 4.86 16 5 C -0.51 -14.32 8.28 -34.44 -0.29 -14.60 16 6 H 0.06 1.81 7.26 -52.49 -0.38 1.43 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.10 1.78 5.15 -4.98 -0.03 1.76 16 14 C 0.15 2.81 5.96 -82.63 -0.49 2.32 16 15 C -0.09 -1.67 7.98 -39.00 -0.31 -1.98 16 16 C -0.08 -1.32 5.91 -104.66 -0.62 -1.94 16 17 C 0.51 8.30 7.92 34.75 0.28 8.58 16 18 O -0.49 -9.39 16.23 -19.21 -0.31 -9.70 16 19 O -0.36 -4.69 9.92 -40.39 -0.40 -5.09 16 20 C 0.04 0.36 10.56 101.05 1.07 1.43 16 21 C -0.13 -1.74 9.71 -39.01 -0.38 -2.12 16 22 C 0.09 1.22 11.17 -17.60 -0.20 1.02 16 23 N -0.44 -7.54 10.24 -9.53 -0.10 -7.64 16 24 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.05 0.70 6.51 -51.93 -0.34 0.36 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 28 H 0.09 1.86 6.59 -51.93 -0.34 1.52 16 29 H 0.03 0.89 6.27 -51.93 -0.33 0.56 16 30 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.80 7.89 -51.93 -0.41 0.39 16 33 H 0.09 1.39 6.23 -51.93 -0.32 1.07 16 34 H 0.15 2.85 7.64 -52.49 -0.40 2.44 16 35 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.14 1.48 7.71 -52.48 -0.40 1.08 16 39 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -33.16 332.41 -7.30 -40.45 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -5.44 Total: -1.28 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -0.74 Total: 0.01 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.40 Total: -46.34 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.71 Total: -14.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.16 -7.30 -40.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235203227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.349 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds