Wall clock time and date at job start Tue Mar 31 2020 00:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46908 * 109.46996 * 2 1 4 4 C 1.46897 * 110.99863 * 164.08590 * 3 2 1 5 5 C 1.50702 * 109.47117 * 293.95524 * 4 3 2 6 6 H 1.08001 * 119.99917 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99808 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99795 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99754 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47405 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47458 * 120.00021 * 9 7 5 12 12 H 1.48505 * 109.47046 * 239.99917 * 9 7 5 13 13 C 1.46903 * 110.99943 * 288.04283 * 3 2 1 14 14 C 1.50692 * 109.47018 * 160.03984 * 13 3 2 15 15 C 1.38178 * 119.54883 * 95.02669 * 14 13 3 16 16 C 1.39845 * 118.99135 * 179.71957 * 15 14 13 17 17 C 1.48047 * 120.92857 * 180.30495 * 16 15 14 18 18 O 1.21428 * 119.99713 * 0.23842 * 17 16 15 19 19 O 1.34662 * 120.00475 * 180.24275 * 17 16 15 20 20 C 1.45200 * 117.00383 * 179.97438 * 19 17 16 21 21 C 1.39880 * 118.14324 * 0.53796 * 16 15 14 22 22 C 1.38127 * 118.99896 * 359.74100 * 21 16 15 23 23 N 1.31800 * 119.55298 * 275.30040 * 14 13 3 24 24 H 1.09008 * 109.46994 * 299.13345 * 1 2 3 25 25 H 1.09000 * 109.47342 * 59.13262 * 1 2 3 26 26 H 1.09000 * 109.47147 * 179.14161 * 1 2 3 27 27 H 1.08999 * 109.46781 * 240.00636 * 2 1 3 28 28 H 1.08993 * 109.47289 * 120.00135 * 2 1 3 29 29 H 1.09002 * 109.46964 * 173.95646 * 4 3 2 30 30 H 1.09004 * 109.47071 * 53.95197 * 4 3 2 31 31 H 0.97000 * 119.99567 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46391 * 280.03886 * 13 3 2 33 33 H 1.09000 * 109.47148 * 40.03836 * 13 3 2 34 34 H 1.07994 * 120.50216 * 359.97438 * 15 14 13 35 35 H 1.09000 * 109.47051 * 180.02562 * 20 19 17 36 36 H 1.08993 * 109.47235 * 299.99719 * 20 19 17 37 37 H 1.08999 * 109.46839 * 60.00263 * 20 19 17 38 38 H 1.08003 * 120.49750 * 179.76335 * 21 16 15 39 39 H 1.08002 * 119.54698 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4385 1.4418 0.3760 5 6 3.5960 1.0058 1.8100 6 1 2.7287 0.7160 2.3846 7 6 4.8472 0.9779 2.3886 8 7 5.9032 1.3313 1.6889 9 14 5.0425 0.4368 4.1658 10 1 3.7116 0.0926 4.7275 11 1 5.9287 -0.7532 4.2265 12 1 5.6423 1.5415 4.9565 13 6 1.7946 2.0230 -1.3040 14 6 1.8382 3.5208 -1.1446 15 6 3.0187 4.1976 -1.3850 16 6 3.0444 5.5882 -1.2393 17 6 4.2841 6.3570 -1.4924 18 8 5.2963 5.7808 -1.8358 19 8 4.2892 7.6952 -1.3417 20 6 5.5399 8.3836 -1.6063 21 6 1.8675 6.2320 -0.8430 22 6 0.7337 5.4758 -0.6181 23 7 0.7513 4.1669 -0.7727 24 1 -0.3633 0.5004 0.8977 25 1 -0.3634 0.5272 -0.8821 26 1 -0.3633 -1.0275 -0.0154 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 3.8034 2.4629 0.2646 30 1 4.0126 0.7781 -0.2706 31 1 6.7835 1.3113 2.0959 32 1 2.5717 1.7089 -2.0009 33 1 0.8192 1.7269 -1.6899 34 1 3.9068 3.6613 -1.6848 35 1 5.4063 9.4537 -1.4476 36 1 6.3101 8.0100 -0.9316 37 1 5.8423 8.2039 -2.6380 38 1 1.8456 7.3042 -0.7151 39 1 -0.1797 5.9637 -0.3114 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235203227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:24 Heat of formation + Delta-G solvation = -65.165576 kcal Electronic energy + Delta-G solvation = -21544.458842 eV Core-core repulsion = 18258.588798 eV Total energy + Delta-G solvation = -3285.870044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.95838 -40.84471 -38.51203 -37.67849 -34.84568 -33.98186 -33.17710 -31.32341 -29.27293 -28.92289 -26.75814 -25.66688 -24.20233 -23.81219 -22.26692 -21.29166 -19.12977 -18.55594 -18.36608 -17.55002 -17.26644 -16.78818 -16.65662 -16.27077 -16.18043 -15.51346 -15.22463 -14.77761 -14.66328 -14.32640 -14.21101 -14.04132 -13.81132 -13.27585 -13.09268 -12.84491 -12.68218 -12.59967 -12.56974 -12.32193 -12.02069 -11.93059 -11.83532 -11.61907 -11.26805 -11.01791 -10.63256 -10.56261 -10.05374 -9.03151 -8.21577 -6.31375 -0.53819 0.04380 1.36344 1.37809 1.38389 1.45493 1.52364 2.38048 2.66839 3.11049 3.26113 3.42681 3.47757 3.73921 3.86534 3.99033 4.25158 4.26515 4.28169 4.37775 4.43050 4.56573 4.59289 4.64718 4.73575 4.78668 4.82006 4.95509 5.07225 5.11729 5.13004 5.18538 5.35844 5.49982 5.57487 5.64218 6.04646 6.34359 6.47175 6.59438 6.85133 6.94389 7.37940 8.89354 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012906 B = 0.005898 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.932743 B = 4746.531290 C = 6262.084649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 N -0.535 5.535 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.063 0.937 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.277 1.277 12 H -0.281 1.281 13 C 0.099 3.901 14 C 0.136 3.864 15 C -0.117 4.117 16 C -0.097 4.097 17 C 0.512 3.488 18 O -0.531 6.531 19 O -0.345 6.345 20 C 0.027 3.973 21 C -0.106 4.106 22 C 0.096 3.904 23 N -0.458 5.458 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.025 0.975 28 H 0.062 0.938 29 H 0.006 0.994 30 H -0.039 1.039 31 H 0.263 0.737 32 H 0.040 0.960 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.185 0.815 39 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.466 12.445 -7.054 17.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.072 4.072 3 N -0.259 5.259 4 C 0.080 3.920 5 C -0.558 4.558 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.207 1.207 13 C -0.029 4.029 14 C -0.001 4.001 15 C -0.138 4.138 16 C -0.106 4.106 17 C 0.357 3.643 18 O -0.421 6.421 19 O -0.261 6.261 20 C -0.065 4.065 21 C -0.126 4.126 22 C -0.062 4.062 23 N -0.168 5.168 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.024 0.976 30 H -0.022 1.022 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.127 0.873 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.203 0.797 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -9.969 12.095 -6.653 17.027 hybrid contribution 2.545 -0.364 -0.045 2.571 sum -7.424 11.731 -6.698 15.415 Atomic orbital electron populations 1.21692 0.93088 1.01899 1.02060 1.22037 0.96852 0.88189 1.00169 1.61993 1.19674 1.17871 1.26397 1.19443 0.83193 0.94521 0.94893 1.21476 0.92984 1.43814 0.97512 0.91908 1.25919 0.95478 0.95565 1.02791 1.70117 0.99154 1.49565 1.38601 0.85362 0.78503 0.77854 0.79093 1.18507 1.20239 1.20691 1.20991 1.02513 0.88085 0.91319 1.21029 0.88138 0.96637 0.94316 1.22070 0.99281 0.93741 0.98756 1.19527 0.93253 0.92780 1.04994 1.21271 0.87803 0.81941 0.73287 1.90856 1.35550 1.71441 1.44277 1.86494 1.40345 1.18993 1.80248 1.23683 0.82546 0.98300 1.02004 1.22812 0.90935 1.03670 0.95184 1.23575 0.99531 0.88323 0.94734 1.67368 1.29231 1.11410 1.08802 0.93104 0.92080 0.90768 0.95656 0.91901 0.97568 1.02153 0.92872 0.94211 0.87333 0.86309 0.83614 0.92540 0.91526 0.79725 0.77492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.99 71.98 0.72 -3.17 16 2 C 0.06 2.14 5.52 86.30 0.48 2.62 16 3 N -0.53 -23.77 4.37 -905.36 -3.96 -27.73 16 4 C 0.21 11.32 4.54 85.56 0.39 11.71 16 5 C -0.52 -30.32 8.28 25.60 0.21 -30.10 16 6 H 0.06 3.61 7.26 -2.91 -0.02 3.58 16 7 C 0.00 0.02 5.46 84.66 0.46 0.48 16 8 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 9 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.10 3.73 5.15 85.55 0.44 4.17 16 14 C 0.14 5.03 5.96 42.55 0.25 5.28 16 15 C -0.12 -4.51 7.98 22.64 0.18 -4.33 16 16 C -0.10 -3.14 5.91 -19.89 -0.12 -3.25 16 17 C 0.51 16.87 7.92 70.43 0.56 17.42 16 18 O -0.53 -21.47 16.23 20.07 0.33 -21.15 16 19 O -0.35 -8.54 9.92 -55.71 -0.55 -9.09 16 20 C 0.03 0.50 10.56 113.37 1.20 1.69 16 21 C -0.11 -2.53 9.71 22.64 0.22 -2.31 16 22 C 0.10 2.31 11.17 84.67 0.95 3.25 16 23 N -0.46 -14.87 10.24 -184.05 -1.89 -16.76 16 24 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 25 H 0.06 1.66 6.51 -2.39 -0.02 1.65 16 26 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 28 H 0.06 2.73 6.59 -2.39 -0.02 2.72 16 29 H 0.01 0.37 6.27 -2.39 -0.01 0.36 16 30 H -0.04 -2.34 8.12 -2.39 -0.02 -2.36 16 31 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 32 H 0.04 1.51 7.89 -2.39 -0.02 1.49 16 33 H 0.11 3.48 6.23 -2.39 -0.01 3.47 16 34 H 0.12 5.13 7.64 -2.91 -0.02 5.10 16 35 H 0.15 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.19 2.88 7.71 -2.91 -0.02 2.86 16 39 H 0.21 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -75.68 332.41 3.22 -72.46 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 1.05 Total: 9.15 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.94 Total: 3.46 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -5.56 Total: -102.46 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.23 Total: -30.24 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -75.68 3.22 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235203227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.292 kcal (2) G-P(sol) polarization free energy of solvation -75.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds