Wall clock time and date at job start Tue Mar 31 2020 00:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47022 * 2 1 4 4 C 1.46896 * 111.00330 * 288.17301 * 3 2 1 5 5 C 1.50697 * 109.47387 * 160.35754 * 4 3 2 6 6 H 1.07999 * 119.99698 * 4.64350 * 5 4 3 7 7 C 1.37880 * 120.00118 * 184.64827 * 5 4 3 8 8 N 1.31512 * 119.99839 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47075 * 59.99741 * 9 7 5 11 11 H 1.48499 * 109.47164 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46769 * 299.99981 * 9 7 5 13 13 C 1.46901 * 110.99998 * 164.21571 * 3 2 1 14 14 C 1.50704 * 109.47239 * 293.95665 * 13 3 2 15 15 C 1.38624 * 120.31807 * 90.00156 * 14 13 3 16 16 C 1.38590 * 118.48686 * 180.02562 * 15 14 13 17 17 C 1.39353 * 119.05724 * 359.97438 * 16 15 14 18 18 C 1.48066 * 119.72704 * 179.97438 * 17 16 15 19 19 O 1.21426 * 120.00267 * 359.97438 * 18 17 16 20 20 O 1.34675 * 119.99962 * 179.72950 * 18 17 16 21 21 C 1.45201 * 117.00322 * 180.27950 * 20 18 17 22 22 N 1.32749 * 120.54544 * 0.26079 * 17 16 15 23 23 C 1.31506 * 121.64261 * 359.47012 * 22 17 16 24 24 H 1.09004 * 109.46832 * 179.62191 * 1 2 3 25 25 H 1.09007 * 109.46985 * 299.61452 * 1 2 3 26 26 H 1.08994 * 109.47307 * 59.61979 * 1 2 3 27 27 H 1.09005 * 109.47019 * 240.00536 * 2 1 3 28 28 H 1.08997 * 109.47546 * 120.00161 * 2 1 3 29 29 H 1.09006 * 109.46969 * 280.35576 * 4 3 2 30 30 H 1.09000 * 109.46750 * 40.35259 * 4 3 2 31 31 H 0.96996 * 120.00001 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47076 * 173.95409 * 13 3 2 33 33 H 1.08997 * 109.47090 * 53.95688 * 13 3 2 34 34 H 1.07999 * 120.76043 * 359.97438 * 15 14 13 35 35 H 1.08003 * 120.47336 * 180.02562 * 16 15 14 36 36 H 1.09007 * 109.46556 * 299.99848 * 21 20 18 37 37 H 1.09002 * 109.47072 * 59.99082 * 21 20 18 38 38 H 1.08998 * 109.47499 * 179.97438 * 21 20 18 39 39 H 1.07998 * 119.55024 * 180.27216 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7919 2.0239 -1.3030 5 6 1.8436 3.5216 -1.1439 6 1 2.1012 3.9546 -0.1887 7 6 1.5619 4.3391 -2.2180 8 7 1.2486 3.8117 -3.3813 9 14 1.6252 6.1955 -2.0207 10 1 2.9924 6.6031 -1.6084 11 1 1.2849 6.8426 -3.3132 12 1 0.6493 6.6166 -0.9836 13 6 3.4394 1.4414 0.3731 14 6 3.5999 1.0043 1.8063 15 6 3.8144 -0.3309 2.1109 16 6 3.9563 -0.6908 3.4417 17 6 3.8793 0.2968 4.4218 18 6 4.0283 -0.0713 5.8483 19 8 4.2161 -1.2297 6.1600 20 8 3.9603 0.8795 6.7997 21 6 4.1212 0.4472 8.1765 22 7 3.6680 1.5640 4.0876 23 6 3.5350 1.9335 2.8325 24 1 -0.3633 -1.0277 -0.0068 25 1 -0.3633 0.5079 0.8935 26 1 -0.3633 0.5197 -0.8865 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.5642 1.7061 -2.0035 30 1 0.8132 1.7325 -1.6843 31 1 1.0507 4.3868 -4.1369 32 1 3.8040 2.4626 0.2615 33 1 4.0120 0.7783 -0.2753 34 1 3.8689 -1.0740 1.3290 35 1 4.1249 -1.7220 3.7153 36 1 3.3407 -0.2721 8.4249 37 1 5.0983 -0.0203 8.2987 38 1 4.0457 1.3092 8.8392 39 1 3.3684 2.9746 2.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237444494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:35 Heat of formation + Delta-G solvation = -43.812834 kcal Electronic energy + Delta-G solvation = -21130.002292 eV Core-core repulsion = 17845.058172 eV Total energy + Delta-G solvation = -3284.944120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89025 -39.74924 -37.11161 -36.57783 -33.14420 -32.47497 -31.95851 -30.08268 -28.35008 -27.11846 -25.46818 -23.77417 -22.93073 -22.58860 -21.10356 -19.86417 -18.32409 -17.39532 -16.57538 -16.51817 -16.13542 -15.59712 -15.01067 -14.82113 -14.45313 -14.03416 -13.89172 -13.58641 -13.39882 -13.20378 -13.04295 -12.68427 -12.27234 -12.06436 -11.69788 -11.37952 -11.18186 -11.01752 -10.95611 -10.89723 -10.85633 -10.65104 -10.34866 -9.88133 -9.80300 -9.52035 -9.33231 -9.00412 -8.46099 -7.40497 -6.06962 -4.08811 0.49361 1.22325 2.33188 2.47092 3.31575 3.36225 3.38945 3.78647 4.12507 4.39152 4.71249 4.80809 4.87255 4.91065 4.96775 4.98552 5.01071 5.22479 5.29328 5.33096 5.58890 5.61520 5.77370 5.88889 5.95408 6.01908 6.13922 6.21034 6.26196 6.32042 6.50298 6.61658 6.75379 7.11799 7.23614 7.43585 7.74341 7.88076 8.01567 8.08318 8.44228 8.97882 9.55760 11.03498 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.003844 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.871634 B = 7281.583318 C = 8057.632190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.529 5.529 4 C 0.192 3.808 5 C -0.508 4.508 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.094 3.906 14 C -0.072 4.072 15 C -0.087 4.087 16 C -0.104 4.104 17 C 0.069 3.931 18 C 0.528 3.472 19 O -0.507 6.507 20 O -0.334 6.334 21 C 0.033 3.967 22 N -0.436 5.436 23 C 0.117 3.883 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.059 0.941 29 H -0.009 1.009 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -8.410 14.539 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.085 4.085 3 N -0.254 5.254 4 C 0.067 3.933 5 C -0.547 4.547 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.034 4.034 14 C -0.075 4.075 15 C -0.113 4.113 16 C -0.124 4.124 17 C -0.067 4.067 18 C 0.372 3.628 19 O -0.394 6.394 20 O -0.249 6.249 21 C -0.060 4.060 22 N -0.146 5.146 23 C -0.044 4.044 24 H 0.064 0.936 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.077 0.923 29 H 0.008 0.992 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.160 0.840 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.130 -7.836 15.529 18.135 hybrid contribution 0.452 -0.202 -1.150 1.252 sum 5.582 -8.038 14.379 17.393 Atomic orbital electron populations 1.21731 0.95302 1.00035 1.02993 1.22128 0.96334 0.90882 0.99109 1.62229 1.13631 1.14479 1.35025 1.19823 0.96733 0.94282 0.82453 1.21109 1.46598 0.90504 0.96452 0.91850 1.24979 0.95338 0.99004 0.95188 1.69937 1.47326 1.35453 1.01141 0.86571 0.78594 0.85095 0.77229 1.20218 1.21427 1.20113 1.21037 0.91474 1.02621 0.88312 1.21502 0.93584 0.93667 0.98735 1.21565 0.97529 0.96310 0.95917 1.21976 0.97484 1.00513 0.92453 1.19864 1.05533 0.90882 0.90392 1.20906 0.72606 0.83148 0.86136 1.90824 1.45585 1.20134 1.82900 1.86703 1.82248 1.38942 1.16994 1.23328 1.02170 1.01930 0.78611 1.67662 1.08438 1.16990 1.21544 1.22871 0.94537 1.01015 0.85934 0.93600 0.92445 0.91876 0.95795 0.92259 0.99163 0.94199 0.92825 0.88179 0.94427 0.83991 0.83671 0.91836 0.91883 0.87863 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.98 37.16 0.37 -1.98 16 2 C 0.04 0.74 5.52 -3.83 -0.02 0.72 16 3 N -0.53 -10.37 4.37 -237.52 -1.04 -11.41 16 4 C 0.19 4.64 4.59 -4.98 -0.02 4.61 16 5 C -0.51 -13.43 8.61 -34.44 -0.30 -13.73 16 6 H 0.06 1.64 7.66 -52.49 -0.40 1.24 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.79 13.29 55.43 0.74 -25.05 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 C 0.09 1.58 4.96 -4.97 -0.02 1.55 16 14 C -0.07 -1.05 4.95 -104.35 -0.52 -1.57 16 15 C -0.09 -1.10 8.00 -39.31 -0.31 -1.41 16 16 C -0.10 -1.32 9.63 -39.04 -0.38 -1.69 16 17 C 0.07 1.01 6.75 -83.02 -0.56 0.45 16 18 C 0.53 7.52 7.95 34.76 0.28 7.79 16 19 O -0.51 -7.60 16.11 -19.21 -0.31 -7.91 16 20 O -0.33 -4.37 10.38 -40.43 -0.42 -4.79 16 21 C 0.03 0.29 10.56 101.05 1.07 1.36 16 22 N -0.44 -6.75 10.12 -9.81 -0.10 -6.84 16 23 C 0.12 1.75 10.86 -17.56 -0.19 1.56 16 24 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 1.16 6.52 -51.93 -0.34 0.83 16 27 H 0.02 0.40 8.05 -51.93 -0.42 -0.02 16 28 H 0.06 0.88 5.16 -51.93 -0.27 0.61 16 29 H -0.01 -0.24 8.00 -51.93 -0.42 -0.66 16 30 H 0.04 1.04 6.23 -51.93 -0.32 0.72 16 31 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.10 1.79 7.27 -51.93 -0.38 1.41 16 33 H 0.04 0.60 8.07 -51.93 -0.42 0.18 16 34 H 0.14 1.49 7.76 -52.49 -0.41 1.09 16 35 H 0.15 1.59 7.64 -52.48 -0.40 1.19 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -30.40 332.39 -7.29 -37.69 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.44 Total: -1.68 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -0.71 Total: -0.90 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.40 Total: -43.31 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.73 Total: -12.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.40 -7.29 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237444494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.120 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds