Wall clock time and date at job start Tue Mar 31 2020 00:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47022 * 2 1 4 4 C 1.46896 * 111.00330 * 288.17301 * 3 2 1 5 5 C 1.50697 * 109.47387 * 160.35754 * 4 3 2 6 6 H 1.07999 * 119.99698 * 4.64350 * 5 4 3 7 7 C 1.37880 * 120.00118 * 184.64827 * 5 4 3 8 8 N 1.31512 * 119.99839 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00152 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47075 * 59.99741 * 9 7 5 11 11 H 1.48499 * 109.47164 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46769 * 299.99981 * 9 7 5 13 13 C 1.46901 * 110.99998 * 164.21571 * 3 2 1 14 14 C 1.50704 * 109.47239 * 293.95665 * 13 3 2 15 15 C 1.38624 * 120.31807 * 90.00156 * 14 13 3 16 16 C 1.38590 * 118.48686 * 180.02562 * 15 14 13 17 17 C 1.39353 * 119.05724 * 359.97438 * 16 15 14 18 18 C 1.48066 * 119.72704 * 179.97438 * 17 16 15 19 19 O 1.21426 * 120.00267 * 359.97438 * 18 17 16 20 20 O 1.34675 * 119.99962 * 179.72950 * 18 17 16 21 21 C 1.45201 * 117.00322 * 180.27950 * 20 18 17 22 22 N 1.32749 * 120.54544 * 0.26079 * 17 16 15 23 23 C 1.31506 * 121.64261 * 359.47012 * 22 17 16 24 24 H 1.09004 * 109.46832 * 179.62191 * 1 2 3 25 25 H 1.09007 * 109.46985 * 299.61452 * 1 2 3 26 26 H 1.08994 * 109.47307 * 59.61979 * 1 2 3 27 27 H 1.09005 * 109.47019 * 240.00536 * 2 1 3 28 28 H 1.08997 * 109.47546 * 120.00161 * 2 1 3 29 29 H 1.09006 * 109.46969 * 280.35576 * 4 3 2 30 30 H 1.09000 * 109.46750 * 40.35259 * 4 3 2 31 31 H 0.96996 * 120.00001 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.47076 * 173.95409 * 13 3 2 33 33 H 1.08997 * 109.47090 * 53.95688 * 13 3 2 34 34 H 1.07999 * 120.76043 * 359.97438 * 15 14 13 35 35 H 1.08003 * 120.47336 * 180.02562 * 16 15 14 36 36 H 1.09007 * 109.46556 * 299.99848 * 21 20 18 37 37 H 1.09002 * 109.47072 * 59.99082 * 21 20 18 38 38 H 1.08998 * 109.47499 * 179.97438 * 21 20 18 39 39 H 1.07998 * 119.55024 * 180.27216 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7919 2.0239 -1.3030 5 6 1.8436 3.5216 -1.1439 6 1 2.1012 3.9546 -0.1887 7 6 1.5619 4.3391 -2.2180 8 7 1.2486 3.8117 -3.3813 9 14 1.6252 6.1955 -2.0207 10 1 2.9924 6.6031 -1.6084 11 1 1.2849 6.8426 -3.3132 12 1 0.6493 6.6166 -0.9836 13 6 3.4394 1.4414 0.3731 14 6 3.5999 1.0043 1.8063 15 6 3.8144 -0.3309 2.1109 16 6 3.9563 -0.6908 3.4417 17 6 3.8793 0.2968 4.4218 18 6 4.0283 -0.0713 5.8483 19 8 4.2161 -1.2297 6.1600 20 8 3.9603 0.8795 6.7997 21 6 4.1212 0.4472 8.1765 22 7 3.6680 1.5640 4.0876 23 6 3.5350 1.9335 2.8325 24 1 -0.3633 -1.0277 -0.0068 25 1 -0.3633 0.5079 0.8935 26 1 -0.3633 0.5197 -0.8865 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.5642 1.7061 -2.0035 30 1 0.8132 1.7325 -1.6843 31 1 1.0507 4.3868 -4.1369 32 1 3.8040 2.4626 0.2615 33 1 4.0120 0.7783 -0.2753 34 1 3.8689 -1.0740 1.3290 35 1 4.1249 -1.7220 3.7153 36 1 3.3407 -0.2721 8.4249 37 1 5.0983 -0.0203 8.2987 38 1 4.0457 1.3092 8.8392 39 1 3.3684 2.9746 2.5986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237444494.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:33 Heat of formation + Delta-G solvation = -62.782150 kcal Electronic energy + Delta-G solvation = -21130.824863 eV Core-core repulsion = 17845.058172 eV Total energy + Delta-G solvation = -3285.766691 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.95638 -40.83193 -38.58522 -37.60454 -34.87073 -33.95810 -33.06474 -31.52222 -29.55309 -28.47935 -26.83187 -25.01115 -24.26123 -24.09118 -22.19508 -21.37066 -19.35415 -18.56538 -18.40003 -17.51331 -17.24000 -16.97215 -16.68497 -16.00078 -15.83210 -15.25811 -15.19932 -14.98061 -14.53107 -14.29496 -14.13135 -14.08352 -13.78148 -13.28278 -13.03464 -12.91205 -12.74151 -12.55489 -12.51998 -12.23046 -12.07432 -11.97604 -11.83928 -11.50922 -11.30765 -10.87589 -10.66485 -10.52789 -10.17793 -9.00031 -8.14832 -6.23647 -0.60628 0.16787 1.24722 1.45865 1.47824 1.54325 1.55257 2.44366 2.66777 3.07376 3.17703 3.40937 3.72626 3.75713 3.86572 3.91301 4.08802 4.23848 4.27394 4.33283 4.40712 4.58518 4.68729 4.70272 4.75470 4.80924 4.87418 4.97720 5.05710 5.12441 5.18191 5.28854 5.32212 5.39406 5.51766 5.72049 6.12596 6.37538 6.40031 6.63762 6.79758 6.91693 7.45690 8.95290 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.003844 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.871634 B = 7281.583318 C = 8057.632190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.043 3.957 3 N -0.538 5.538 4 C 0.207 3.793 5 C -0.518 4.518 6 H 0.065 0.935 7 C 0.004 3.996 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.271 1.271 13 C 0.099 3.901 14 C -0.078 4.078 15 C -0.074 4.074 16 C -0.094 4.094 17 C 0.057 3.943 18 C 0.529 3.471 19 O -0.518 6.518 20 O -0.348 6.348 21 C 0.026 3.974 22 N -0.453 5.453 23 C 0.109 3.891 24 H 0.077 0.923 25 H 0.051 0.949 26 H 0.033 0.967 27 H 0.026 0.974 28 H 0.087 0.913 29 H -0.033 1.033 30 H 0.015 0.985 31 H 0.263 0.737 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.991 -9.112 16.084 19.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.085 4.085 3 N -0.263 5.263 4 C 0.081 3.919 5 C -0.556 4.556 6 H 0.083 0.917 7 C -0.194 4.194 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.196 1.196 13 C -0.029 4.029 14 C -0.081 4.081 15 C -0.100 4.100 16 C -0.115 4.115 17 C -0.079 4.079 18 C 0.373 3.627 19 O -0.408 6.408 20 O -0.263 6.263 21 C -0.067 4.067 22 N -0.164 5.164 23 C -0.051 4.051 24 H 0.096 0.904 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.044 0.956 28 H 0.105 0.895 29 H -0.016 1.016 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.187 0.813 35 H 0.185 0.815 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.685 -8.540 17.109 19.949 hybrid contribution 0.304 -0.051 -1.521 1.552 sum 5.988 -8.591 15.588 18.779 Atomic orbital electron populations 1.21708 0.95185 1.01570 1.01246 1.22234 0.96479 0.89379 1.00410 1.62102 1.15824 1.16325 1.32035 1.19435 0.94483 0.93746 0.84190 1.21475 1.45817 0.91904 0.96439 0.91653 1.25821 0.95075 1.03643 0.94887 1.70063 1.48597 1.37036 1.01933 0.85541 0.79027 0.79579 0.77111 1.19084 1.21348 1.19631 1.20920 0.89796 1.02123 0.90051 1.21239 0.95184 0.94698 0.96982 1.21810 0.95809 0.95762 0.96645 1.22197 0.96186 1.01147 0.91923 1.20170 1.05511 0.91023 0.91168 1.20894 0.72373 0.83114 0.86345 1.90809 1.46351 1.20473 1.83128 1.86683 1.81864 1.39130 1.18618 1.23672 1.02703 1.03540 0.76798 1.67638 1.09285 1.17843 1.21637 1.22887 0.94863 1.01262 0.86095 0.90436 0.92972 0.94747 0.95604 0.89526 1.01580 0.96741 0.92867 0.89903 0.93372 0.81280 0.81499 0.91394 0.91265 0.85090 0.81360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.47 9.98 71.98 0.72 -3.75 16 2 C 0.04 1.38 5.52 86.30 0.48 1.85 16 3 N -0.54 -21.02 4.37 -905.37 -3.96 -24.97 16 4 C 0.21 10.29 4.59 85.56 0.39 10.69 16 5 C -0.52 -27.82 8.61 25.60 0.22 -27.60 16 6 H 0.07 3.40 7.66 -2.91 -0.02 3.38 16 7 C 0.00 0.20 5.46 84.66 0.46 0.66 16 8 N -0.94 -54.79 13.29 21.45 0.28 -54.50 16 9 Si 0.96 43.12 29.54 68.60 2.03 45.14 16 10 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 11 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 13 C 0.10 3.27 4.96 85.56 0.42 3.69 16 14 C -0.08 -2.16 4.95 -19.69 -0.10 -2.26 16 15 C -0.07 -1.65 8.00 22.45 0.18 -1.47 16 16 C -0.09 -2.13 9.63 22.62 0.22 -1.91 16 17 C 0.06 1.56 6.75 41.88 0.28 1.85 16 18 C 0.53 14.24 7.95 70.43 0.56 14.79 16 19 O -0.52 -14.62 16.11 20.08 0.32 -14.30 16 20 O -0.35 -8.64 10.38 -55.84 -0.58 -9.22 16 21 C 0.03 0.40 10.56 113.37 1.20 1.60 16 22 N -0.45 -13.59 10.12 -184.95 -1.87 -15.46 16 23 C 0.11 3.20 10.86 84.82 0.92 4.12 16 24 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 25 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.03 1.28 6.52 -2.39 -0.02 1.27 16 27 H 0.03 0.83 8.05 -2.38 -0.02 0.81 16 28 H 0.09 2.32 5.16 -2.39 -0.01 2.30 16 29 H -0.03 -1.79 8.00 -2.38 -0.02 -1.81 16 30 H 0.01 0.79 6.23 -2.39 -0.01 0.78 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.08 2.99 7.27 -2.39 -0.02 2.98 16 33 H 0.05 1.48 8.07 -2.39 -0.02 1.46 16 34 H 0.17 2.84 7.76 -2.91 -0.02 2.82 16 35 H 0.17 3.05 7.64 -2.91 -0.02 3.03 16 36 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.17 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -65.74 332.39 3.23 -62.51 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.05 Total: 8.54 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 5.96 Total: 2.26 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -5.55 Total: -94.94 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.26 Total: -23.51 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.74 3.23 -62.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237444494.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.271 kcal (2) G-P(sol) polarization free energy of solvation -65.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds