Wall clock time and date at job start Tue Mar 31 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36934 * 119.99810 * 2 1 4 4 H 1.08008 * 119.99879 * 202.35000 * 3 2 1 5 5 C 1.38813 * 120.00423 * 22.34305 * 3 2 1 6 6 N 1.31615 * 119.99941 * 11.34498 * 5 3 2 7 7 Si 1.86802 * 119.99742 * 191.34759 * 5 3 2 8 8 H 1.48494 * 109.47214 * 90.00334 * 7 5 3 9 9 H 1.48503 * 109.46535 * 210.00038 * 7 5 3 10 10 H 1.48499 * 109.47350 * 329.99777 * 7 5 3 11 11 C 1.46497 * 119.99804 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47420 * 270.00094 * 11 2 1 13 13 N 1.46497 * 109.47420 * 179.97438 * 12 11 2 14 14 C 1.34783 * 120.00289 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99549 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00320 * 180.02562 * 14 13 12 17 17 O 1.42892 * 109.47461 * 180.02562 * 16 14 13 18 18 C 1.35900 * 117.00510 * 179.97438 * 17 16 14 19 19 C 1.38731 * 120.05701 * 179.97438 * 18 17 16 20 20 C 1.38152 * 119.94079 * 179.97438 * 19 18 17 21 21 C 1.38261 * 120.05465 * 0.02562 * 20 19 18 22 22 C 1.38271 * 120.11572 * 359.95439 * 21 20 19 23 23 C 1.38142 * 120.05388 * 0.04505 * 22 21 20 24 24 H 1.09003 * 109.47490 * 274.21628 * 1 2 3 25 25 H 1.09006 * 109.47250 * 34.21056 * 1 2 3 26 26 H 1.08998 * 109.47469 * 154.21122 * 1 2 3 27 27 H 0.96998 * 120.00321 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.47039 * 149.99990 * 11 2 1 29 29 H 1.09007 * 109.47073 * 30.00403 * 11 2 1 30 30 H 1.08999 * 109.47100 * 59.99933 * 12 11 2 31 31 H 1.09007 * 109.47250 * 300.00200 * 12 11 2 32 32 H 0.97004 * 119.99942 * 0.02562 * 13 12 11 33 33 H 1.08999 * 109.47184 * 60.00018 * 16 14 13 34 34 H 1.09007 * 109.46896 * 300.00450 * 16 14 13 35 35 H 1.08000 * 120.02973 * 359.70475 * 19 18 17 36 36 H 1.07995 * 119.96934 * 180.02562 * 20 19 18 37 37 H 1.07997 * 119.94369 * 179.97438 * 21 20 19 38 38 H 1.07996 * 119.97162 * 180.02562 * 22 21 20 39 39 H 1.07999 * 120.02674 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3557 5 6 1.5338 2.3430 0.4570 6 7 0.3841 2.2692 1.0935 7 14 2.3368 4.0047 0.1685 8 1 1.8680 4.5631 -1.1251 9 1 1.9682 4.9303 1.2698 10 1 3.8123 3.8419 0.1317 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7098 1.4432 13 7 3.1844 -2.9789 1.4437 14 6 3.5217 -3.5618 2.6112 15 8 3.2188 -3.0359 3.6613 16 6 4.2750 -4.8669 2.6118 17 8 4.5131 -5.2790 3.9592 18 6 5.1862 -6.4460 4.1378 19 6 5.4522 -6.9055 5.4195 20 6 6.1362 -8.0925 5.5983 21 6 6.5558 -8.8219 4.5013 22 6 6.2916 -8.3662 3.2228 23 6 5.6080 -7.1800 3.0387 24 1 -0.3634 0.0756 1.0249 25 1 -0.3634 0.8499 -0.5778 26 1 -0.3634 -0.9253 -0.4471 27 1 -0.0461 3.0776 1.4131 28 1 3.1499 -1.1386 -0.5133 29 1 1.6083 -2.0286 -0.5130 30 1 1.5000 -1.8399 1.9571 31 1 3.0416 -0.9499 1.9568 32 1 3.4269 -3.3992 0.6038 33 1 5.2273 -4.7370 2.0976 34 1 3.6857 -5.6269 2.0985 35 1 5.1288 -6.3337 6.2767 36 1 6.3432 -8.4508 6.5958 37 1 7.0907 -9.7493 4.6431 38 1 6.6201 -8.9380 2.3676 39 1 5.4022 -6.8243 2.0399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267227607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:43:09 Heat of formation + Delta-G solvation = -20.319833 kcal Electronic energy + Delta-G solvation = -20404.045886 eV Core-core repulsion = 17120.120499 eV Total energy + Delta-G solvation = -3283.925387 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.50240 -39.21623 -37.41306 -36.04021 -34.19169 -31.54514 -31.28895 -30.44564 -29.10001 -27.24590 -25.87740 -23.47271 -22.84393 -22.23613 -20.72667 -20.21882 -18.60394 -17.18262 -16.76377 -16.48747 -16.37912 -15.79440 -15.21826 -14.77753 -14.72887 -14.56564 -13.81309 -13.71871 -13.64645 -13.24460 -12.83121 -12.79149 -12.33909 -12.31391 -11.87212 -11.33306 -11.22195 -11.15729 -10.90701 -10.88440 -10.61360 -10.31476 -10.01799 -9.93990 -9.66108 -9.28767 -8.74189 -8.58664 -8.46301 -6.85934 -5.76989 -3.24699 1.05637 1.17935 2.54095 2.71526 3.37075 3.43046 3.45027 3.52248 3.69385 4.45022 4.49610 4.60178 4.70937 4.80917 4.86673 4.87658 5.09918 5.21395 5.36020 5.37918 5.59601 5.72723 5.82703 5.90600 6.03121 6.11951 6.22760 6.25391 6.47683 6.59695 6.66884 6.69782 6.90947 7.14605 7.34096 7.67009 7.70174 7.77767 8.33165 8.38753 9.18076 9.79878 10.27724 11.28016 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.039364 B = 0.002605 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.131371 B =10747.514808 C =10900.963315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.596 5.596 3 C -0.262 4.262 4 H 0.071 0.929 5 C 0.004 3.996 6 N -0.905 5.905 7 Si 0.908 3.092 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.144 3.856 12 C 0.095 3.905 13 N -0.720 5.720 14 C 0.507 3.493 15 O -0.518 6.518 16 C 0.041 3.959 17 O -0.288 6.288 18 C 0.132 3.868 19 C -0.150 4.150 20 C -0.081 4.081 21 C -0.163 4.163 22 C -0.080 4.080 23 C -0.213 4.213 24 H 0.030 0.970 25 H 0.048 0.952 26 H -0.002 1.002 27 H 0.254 0.746 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.415 -21.888 1.503 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.318 5.318 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.738 3.262 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.030 4.030 13 N -0.374 5.374 14 C 0.290 3.710 15 O -0.393 6.393 16 C -0.038 4.038 17 O -0.200 6.200 18 C 0.086 3.914 19 C -0.169 4.169 20 C -0.099 4.099 21 C -0.181 4.181 22 C -0.099 4.099 23 C -0.231 4.231 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.229 0.771 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.958 -21.165 2.473 23.521 hybrid contribution 0.530 0.660 -0.623 1.051 sum 10.488 -20.505 1.850 23.106 Atomic orbital electron populations 1.20863 0.82089 0.95797 0.99541 1.43945 1.02111 1.00345 1.85443 1.19226 0.98194 0.85179 1.36514 0.91159 1.25087 0.97655 0.98763 0.98019 1.70064 1.17771 1.27318 1.39802 0.86199 0.78837 0.83806 0.77343 1.21402 1.21638 1.20430 1.21002 0.96430 0.88992 0.92013 1.22618 0.95721 0.82262 1.02397 1.46060 1.58555 1.25501 1.07247 1.19986 0.80468 0.85624 0.84889 1.90773 1.53232 1.64159 1.31150 1.22556 1.01190 0.96304 0.83734 1.86192 1.70833 1.36028 1.26954 1.19138 0.92300 0.85542 0.94413 1.20514 1.03301 0.98017 0.95046 1.20986 0.96124 0.93565 0.99189 1.21069 1.03391 1.01052 0.92597 1.20950 0.96492 0.95015 0.97398 1.21300 1.05547 0.98177 0.98110 0.95175 0.93366 0.98343 0.93560 0.93242 0.93896 0.91998 0.91117 0.77073 0.89075 0.89119 0.84947 0.85338 0.85976 0.85781 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 9.01 59.85 0.54 4.48 16 2 N -0.60 -14.73 2.93 -181.12 -0.53 -15.26 16 3 C -0.26 -7.10 9.67 -15.06 -0.15 -7.25 16 4 H 0.07 1.85 7.84 -52.48 -0.41 1.44 16 5 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 6 N -0.91 -26.46 10.58 55.49 0.59 -25.88 16 7 Si 0.91 21.85 29.57 -169.99 -5.03 16.83 16 8 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 C 0.14 2.76 5.82 -4.05 -0.02 2.74 16 12 C 0.10 1.82 6.00 -4.05 -0.02 1.79 16 13 N -0.72 -10.29 5.56 -60.30 -0.33 -10.62 16 14 C 0.51 7.96 7.91 -10.99 -0.09 7.87 16 15 O -0.52 -11.02 16.50 -14.36 -0.24 -11.26 16 16 C 0.04 0.46 5.22 36.00 0.19 0.65 16 17 O -0.29 -4.03 9.67 -39.33 -0.38 -4.41 16 18 C 0.13 1.54 6.69 -39.21 -0.26 1.28 16 19 C -0.15 -1.61 9.99 -39.43 -0.39 -2.00 16 20 C -0.08 -0.68 10.04 -39.60 -0.40 -1.08 16 21 C -0.16 -1.28 10.04 -39.56 -0.40 -1.68 16 22 C -0.08 -0.65 10.04 -39.60 -0.40 -1.04 16 23 C -0.21 -1.98 9.04 -39.43 -0.36 -2.33 16 24 H 0.03 0.80 7.42 -51.93 -0.39 0.41 16 25 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 26 H 0.00 -0.04 7.84 -51.93 -0.41 -0.45 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 29 H 0.04 0.72 7.86 -51.93 -0.41 0.31 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 33 H 0.09 0.76 7.66 -51.93 -0.40 0.37 16 34 H 0.09 0.74 7.66 -51.93 -0.40 0.35 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 0.92 6.30 -52.49 -0.33 0.59 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -34.36 333.83 -8.29 -42.64 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.55 Total: -0.52 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.85 Total: 3.44 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.28 Total: -51.76 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.62 Total: -15.67 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.36 -8.29 -42.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267227607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.323 kcal (2) G-P(sol) polarization free energy of solvation -34.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds