Wall clock time and date at job start Tue Mar 31 2020 01:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99922 * 2 1 4 4 C 1.53003 * 109.46881 * 269.99421 * 3 2 1 5 5 N 1.46501 * 109.46881 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99632 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00191 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00004 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47110 * 89.99534 * 10 8 6 12 12 H 1.48498 * 109.47432 * 209.99827 * 10 8 6 13 13 H 1.48506 * 109.47066 * 329.99878 * 10 8 6 14 14 C 1.34781 * 119.99892 * 179.97438 * 2 1 3 15 15 O 1.21613 * 119.99965 * 185.18352 * 14 2 1 16 16 C 1.47376 * 119.99711 * 5.19028 * 14 2 1 17 17 C 1.47023 * 127.19802 * 321.28816 * 16 14 2 18 18 C 1.34170 * 105.95653 * 180.29982 * 17 16 14 19 19 O 1.34222 * 109.12388 * 359.75617 * 18 17 16 20 20 C 1.33651 * 110.90859 * 0.02562 * 19 18 17 21 21 C 1.50695 * 125.80043 * 180.02562 * 20 19 18 22 22 C 1.53002 * 117.49840 * 300.01958 * 21 20 19 23 23 C 1.52998 * 60.03146 * 107.47830 * 22 21 20 24 24 H 1.09009 * 109.47416 * 264.55587 * 1 2 3 25 25 H 1.09003 * 109.47387 * 24.55127 * 1 2 3 26 26 H 1.08997 * 109.47338 * 144.55308 * 1 2 3 27 27 H 1.08998 * 109.47285 * 29.99691 * 3 2 1 28 28 H 1.09003 * 109.46802 * 149.99976 * 3 2 1 29 29 H 1.08996 * 109.47506 * 300.00733 * 4 3 2 30 30 H 1.09001 * 109.46446 * 60.00546 * 4 3 2 31 31 H 0.96998 * 120.00449 * 0.02562 * 5 4 3 32 32 H 0.97005 * 119.99875 * 179.97438 * 9 8 6 33 33 H 1.07999 * 127.01502 * 0.07604 * 17 16 14 34 34 H 1.07993 * 125.44037 * 179.79480 * 18 17 16 35 35 H 1.08997 * 115.56502 * 154.33241 * 21 20 19 36 36 H 1.09005 * 117.49711 * 214.98352 * 22 21 20 37 37 H 1.09001 * 117.50074 * 359.97438 * 22 21 20 38 38 H 1.09003 * 117.49781 * 107.50103 * 23 22 21 39 39 H 1.08994 * 117.50042 * 252.51823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5263 3.5725 -2.6285 7 1 3.2560 3.1050 -3.5638 8 6 4.2194 4.7752 -2.6286 9 7 4.5484 5.3451 -3.7684 10 14 4.6864 5.5842 -1.0109 11 1 6.0231 5.0995 -0.5828 12 1 4.7277 7.0580 -1.1882 13 1 3.6795 5.2382 0.0244 14 6 2.1388 -1.1672 0.0005 15 8 3.3512 -1.1694 0.0957 16 6 1.4064 -2.4409 -0.1144 17 6 0.1175 -2.7841 0.5042 18 6 -0.1491 -4.0436 0.1267 19 8 0.8451 -4.4872 -0.6584 20 6 1.7820 -3.5475 -0.8183 21 6 3.0415 -3.6882 -1.6337 22 6 4.0217 -4.7931 -1.2345 23 6 3.1828 -4.9382 -2.5057 24 1 -0.3634 -0.0975 1.0231 25 1 -0.3634 0.9348 -0.4270 26 1 -0.3634 -0.8372 -0.5960 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 3.0415 0.9506 -1.9564 30 1 1.5001 1.8406 -1.9563 31 1 3.4270 3.3995 -0.6026 32 1 5.0324 6.1858 -3.7685 33 1 -0.4887 -2.1525 1.1367 34 1 -1.0243 -4.6100 0.4088 35 1 3.4607 -2.7575 -2.0160 36 1 5.0858 -4.5892 -1.3542 37 1 3.7558 -5.4179 -0.3819 38 1 3.6950 -4.8299 -3.4618 39 1 2.3648 -5.6583 -2.4894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267419678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:56 Heat of formation + Delta-G solvation = 31.566924 kcal Electronic energy + Delta-G solvation = -21345.485683 eV Core-core repulsion = 18063.810275 eV Total energy + Delta-G solvation = -3281.675408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.80081 -39.51560 -37.30323 -35.94922 -34.54112 -33.07793 -31.44184 -29.95102 -28.69460 -26.64559 -24.56789 -23.23176 -22.71063 -22.38557 -21.38882 -20.61378 -18.96077 -17.75350 -17.50908 -16.48227 -16.38624 -15.93164 -15.58276 -15.17148 -14.75987 -14.29708 -13.73450 -13.71322 -13.64519 -13.16656 -12.95903 -12.75023 -12.63613 -12.18903 -12.12446 -11.78138 -11.57006 -11.15502 -11.12551 -11.07089 -10.72539 -10.66385 -10.15588 -9.99255 -9.76803 -9.57931 -8.87757 -8.69844 -8.48708 -7.22637 -5.74585 -3.10751 1.26847 1.90511 2.54522 2.94025 3.23667 3.39760 3.43629 3.47824 3.66201 4.14215 4.48483 4.54915 4.61655 4.73043 4.74352 4.94919 5.11890 5.20956 5.31364 5.37473 5.40770 5.51239 5.56666 5.59440 5.61232 5.68992 5.77868 5.81857 5.84820 5.87741 5.98063 6.07564 6.48047 6.65364 6.81737 6.85927 7.46304 8.00597 8.27207 8.43749 9.22344 9.94551 10.14004 11.43768 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.003922 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.155122 B = 7138.218268 C = 7803.445888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.605 5.605 3 C 0.104 3.896 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.090 0.910 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.586 3.414 15 O -0.528 6.528 16 C -0.227 4.227 17 C -0.187 4.187 18 C -0.041 4.041 19 O -0.176 6.176 20 C 0.099 3.901 21 C -0.087 4.087 22 C -0.155 4.155 23 C -0.170 4.170 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.361 0.639 32 H 0.260 0.740 33 H 0.159 0.841 34 H 0.208 0.792 35 H 0.142 0.858 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.459 -21.832 9.183 26.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.338 5.338 3 C -0.018 4.018 4 C 0.019 3.981 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.107 0.893 8 C -0.191 4.191 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.375 3.625 15 O -0.405 6.405 16 C -0.231 4.231 17 C -0.206 4.206 18 C -0.107 4.107 19 O -0.072 6.072 20 C 0.046 3.954 21 C -0.104 4.104 22 C -0.192 4.192 23 C -0.207 4.207 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.177 0.823 34 H 0.224 0.776 35 H 0.160 0.840 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.790 -22.054 8.867 26.104 hybrid contribution -0.002 0.993 1.257 1.602 sum -10.792 -21.061 10.124 25.740 Atomic orbital electron populations 1.21975 0.79606 1.03695 1.01283 1.47562 1.07013 1.05836 1.73376 1.21752 0.97662 0.83298 0.99122 1.20892 0.95410 0.88589 0.93244 1.42561 1.68810 1.23113 1.05485 1.19033 1.29754 1.02876 0.85651 0.89250 1.24663 1.00438 0.97580 0.96412 1.69704 1.44945 1.19651 1.23928 0.86527 0.78634 0.78925 0.84331 1.20941 1.21682 1.20336 1.17284 0.86429 0.82451 0.76372 1.90819 1.13379 1.87085 1.49246 1.21062 0.98311 0.96255 1.07482 1.22967 0.96283 0.96776 1.04597 1.23837 0.93367 0.95995 0.97488 1.83701 1.27275 1.40446 1.55767 1.21554 0.90086 0.85870 0.97850 1.20613 0.91341 0.96773 1.01718 1.23039 0.97547 0.99796 0.98824 1.23088 1.03164 0.98671 0.95749 0.92822 0.90549 0.90761 0.90441 0.89565 0.95197 0.95542 0.80638 0.93039 0.82339 0.77590 0.84048 0.87400 0.88450 0.87596 0.88118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 9.10 59.85 0.54 1.35 16 2 N -0.60 -8.88 2.87 -182.86 -0.53 -9.41 16 3 C 0.10 1.76 5.54 -4.04 -0.02 1.74 16 4 C 0.15 3.05 6.58 -4.04 -0.03 3.03 16 5 N -0.75 -18.78 5.41 -59.91 -0.32 -19.11 16 6 C -0.24 -7.15 10.47 -15.06 -0.16 -7.31 16 7 H 0.09 2.81 8.06 -52.48 -0.42 2.39 16 8 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 9 N -0.93 -29.92 13.97 55.49 0.78 -29.15 16 10 Si 0.89 22.56 27.74 -169.99 -4.71 17.85 16 11 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 13 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 14 C 0.59 9.50 7.44 -12.54 -0.09 9.41 16 15 O -0.53 -10.41 15.93 5.27 0.08 -10.33 16 16 C -0.23 -3.02 5.44 -103.27 -0.56 -3.58 16 17 C -0.19 -1.79 8.84 -37.46 -0.33 -2.12 16 18 C -0.04 -0.34 12.03 29.30 0.35 0.02 16 19 O -0.18 -1.88 10.23 7.64 0.08 -1.81 16 20 C 0.10 1.25 6.85 -34.97 -0.24 1.01 16 21 C -0.09 -1.04 5.62 -91.74 -0.52 -1.55 16 22 C -0.16 -1.53 10.23 -26.73 -0.27 -1.80 16 23 C -0.17 -1.55 10.17 -26.69 -0.27 -1.82 16 24 H 0.05 0.44 7.42 -51.92 -0.39 0.06 16 25 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 26 H 0.07 0.71 5.92 -51.93 -0.31 0.40 16 27 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 28 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.36 8.66 5.53 -40.82 -0.23 8.44 16 32 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 33 H 0.16 1.14 6.66 -52.49 -0.35 0.79 16 34 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.93 7.89 -51.93 -0.41 1.52 16 36 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.10 0.85 7.96 -51.93 -0.41 0.44 16 LS Contribution 330.68 15.07 4.98 4.98 Total: -1.00 -35.76 330.68 -6.77 -42.53 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.44 Total: 6.03 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.69 Total: -1.59 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.07 Total: -57.66 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.16 Total: -12.13 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -4.71 Total: 17.85 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -35.76 -6.77 -42.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267419678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.097 kcal (2) G-P(sol) polarization free energy of solvation -35.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds