Wall clock time and date at job start Tue Mar 31 2020 01:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 119.99922 * 2 1 4 4 C 1.53003 * 109.46881 * 269.99421 * 3 2 1 5 5 N 1.46501 * 109.46881 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99632 * 180.02562 * 5 4 3 7 7 H 1.08003 * 119.99902 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00023 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00191 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 120.00004 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.47110 * 89.99534 * 10 8 6 12 12 H 1.48498 * 109.47432 * 209.99827 * 10 8 6 13 13 H 1.48506 * 109.47066 * 329.99878 * 10 8 6 14 14 C 1.34781 * 119.99892 * 179.97438 * 2 1 3 15 15 O 1.21613 * 119.99965 * 185.18352 * 14 2 1 16 16 C 1.47376 * 119.99711 * 5.19028 * 14 2 1 17 17 C 1.47023 * 127.19802 * 321.28816 * 16 14 2 18 18 C 1.34170 * 105.95653 * 180.29982 * 17 16 14 19 19 O 1.34222 * 109.12388 * 359.75617 * 18 17 16 20 20 C 1.33651 * 110.90859 * 0.02562 * 19 18 17 21 21 C 1.50695 * 125.80043 * 180.02562 * 20 19 18 22 22 C 1.53002 * 117.49840 * 300.01958 * 21 20 19 23 23 C 1.52998 * 60.03146 * 107.47830 * 22 21 20 24 24 H 1.09009 * 109.47416 * 264.55587 * 1 2 3 25 25 H 1.09003 * 109.47387 * 24.55127 * 1 2 3 26 26 H 1.08997 * 109.47338 * 144.55308 * 1 2 3 27 27 H 1.08998 * 109.47285 * 29.99691 * 3 2 1 28 28 H 1.09003 * 109.46802 * 149.99976 * 3 2 1 29 29 H 1.08996 * 109.47506 * 300.00733 * 4 3 2 30 30 H 1.09001 * 109.46446 * 60.00546 * 4 3 2 31 31 H 0.96998 * 120.00449 * 0.02562 * 5 4 3 32 32 H 0.97005 * 119.99875 * 179.97438 * 9 8 6 33 33 H 1.07999 * 127.01502 * 0.07604 * 17 16 14 34 34 H 1.07993 * 125.44037 * 179.79480 * 18 17 16 35 35 H 1.08997 * 115.56502 * 154.33241 * 21 20 19 36 36 H 1.09005 * 117.49711 * 214.98352 * 22 21 20 37 37 H 1.09001 * 117.50074 * 359.97438 * 22 21 20 38 38 H 1.09003 * 117.49781 * 107.50103 * 23 22 21 39 39 H 1.08994 * 117.50042 * 252.51823 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5263 3.5725 -2.6285 7 1 3.2560 3.1050 -3.5638 8 6 4.2194 4.7752 -2.6286 9 7 4.5484 5.3451 -3.7684 10 14 4.6864 5.5842 -1.0109 11 1 6.0231 5.0995 -0.5828 12 1 4.7277 7.0580 -1.1882 13 1 3.6795 5.2382 0.0244 14 6 2.1388 -1.1672 0.0005 15 8 3.3512 -1.1694 0.0957 16 6 1.4064 -2.4409 -0.1144 17 6 0.1175 -2.7841 0.5042 18 6 -0.1491 -4.0436 0.1267 19 8 0.8451 -4.4872 -0.6584 20 6 1.7820 -3.5475 -0.8183 21 6 3.0415 -3.6882 -1.6337 22 6 4.0217 -4.7931 -1.2345 23 6 3.1828 -4.9382 -2.5057 24 1 -0.3634 -0.0975 1.0231 25 1 -0.3634 0.9348 -0.4270 26 1 -0.3634 -0.8372 -0.5960 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 3.0415 0.9506 -1.9564 30 1 1.5001 1.8406 -1.9563 31 1 3.4270 3.3995 -0.6026 32 1 5.0324 6.1858 -3.7685 33 1 -0.4887 -2.1525 1.1367 34 1 -1.0243 -4.6100 0.4088 35 1 3.4607 -2.7575 -2.0160 36 1 5.0858 -4.5892 -1.3542 37 1 3.7558 -5.4179 -0.3819 38 1 3.6950 -4.8299 -3.4618 39 1 2.3648 -5.6583 -2.4894 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267419678.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:41:55 Heat of formation + Delta-G solvation = 7.027473 kcal Electronic energy + Delta-G solvation = -21346.549794 eV Core-core repulsion = 18063.810275 eV Total energy + Delta-G solvation = -3282.739518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.60447 -40.73825 -38.12455 -37.48787 -36.20349 -34.17605 -33.41626 -30.77865 -30.27670 -27.69194 -26.13656 -24.34109 -23.76750 -23.38377 -22.92375 -21.62245 -20.02199 -19.63808 -18.62949 -17.54692 -17.30112 -17.13014 -16.51913 -16.40441 -16.31767 -15.60402 -15.44904 -15.22560 -14.81382 -14.50684 -14.25417 -13.91112 -13.58476 -13.46539 -13.13137 -13.00467 -12.92551 -12.83495 -12.50424 -12.39625 -12.12306 -11.98477 -11.85087 -11.48228 -11.15585 -11.04527 -10.67838 -9.79658 -9.41357 -9.40000 -8.07393 -5.43746 0.34207 1.16632 1.36085 1.41620 1.48062 1.68046 1.86931 2.16135 2.45673 2.83954 3.23590 3.37544 3.52270 3.69940 3.73649 3.96682 3.97001 4.06946 4.11785 4.17669 4.30700 4.47824 4.52357 4.66263 4.66731 4.71278 4.83757 4.89359 4.94998 4.97934 5.00678 5.03302 5.13957 5.39554 5.46598 5.68396 6.04069 6.15223 6.32930 7.00200 7.07512 7.73286 7.95439 9.13909 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.023170 B = 0.003922 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.155122 B = 7138.218268 C = 7803.445888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.604 5.604 3 C 0.117 3.883 4 C 0.151 3.849 5 N -0.754 5.754 6 C -0.245 4.245 7 H 0.052 0.948 8 C -0.060 4.060 9 N -0.982 5.982 10 Si 0.959 3.041 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.245 1.245 14 C 0.579 3.421 15 O -0.578 6.578 16 C -0.254 4.254 17 C -0.193 4.193 18 C -0.024 4.024 19 O -0.177 6.177 20 C 0.088 3.912 21 C -0.117 4.117 22 C -0.152 4.152 23 C -0.147 4.147 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.001 0.999 30 H 0.033 0.967 31 H 0.369 0.631 32 H 0.261 0.739 33 H 0.185 0.815 34 H 0.256 0.744 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.758 -23.050 11.611 29.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.335 5.335 3 C -0.007 4.007 4 C 0.023 3.977 5 N -0.401 5.401 6 C -0.375 4.375 7 H 0.070 0.930 8 C -0.251 4.251 9 N -0.631 5.631 10 Si 0.785 3.215 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.169 1.169 14 C 0.369 3.631 15 O -0.459 6.459 16 C -0.259 4.259 17 C -0.211 4.211 18 C -0.089 4.089 19 O -0.073 6.073 20 C 0.035 3.965 21 C -0.135 4.135 22 C -0.189 4.189 23 C -0.184 4.184 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.019 0.981 30 H 0.051 0.949 31 H 0.203 0.797 32 H 0.069 0.931 33 H 0.202 0.798 34 H 0.271 0.729 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.122 0.878 38 H 0.135 0.865 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.159 -23.308 11.317 29.060 hybrid contribution 0.656 1.280 0.400 1.493 sum -12.503 -22.028 11.717 27.907 Atomic orbital electron populations 1.22278 0.76655 1.04501 1.03566 1.47655 1.08768 1.04558 1.72566 1.21474 0.98087 0.85125 0.95969 1.20937 0.94400 0.86185 0.96151 1.42491 1.69133 1.24163 1.04266 1.18976 1.29514 1.03009 0.86028 0.93036 1.25561 1.00583 0.98313 1.00691 1.69889 1.46111 1.20286 1.26854 0.85360 0.78899 0.77380 0.79880 1.20667 1.21538 1.16903 1.17819 0.86097 0.83782 0.75372 1.90777 1.15632 1.87907 1.51597 1.21062 1.00303 0.95171 1.09327 1.23217 0.94916 0.97835 1.05178 1.24798 0.93174 0.95780 0.95128 1.83719 1.27447 1.39950 1.56232 1.21569 0.90569 0.86249 0.98102 1.20513 0.92441 0.96620 1.03971 1.23114 0.97482 0.98620 0.99656 1.23172 1.02922 0.96595 0.95721 0.89709 0.89937 0.89820 0.87465 0.91248 0.98056 0.94898 0.79729 0.93054 0.79812 0.72857 0.87090 0.87167 0.87784 0.86544 0.86886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 9.10 127.77 1.16 2.45 16 2 N -0.60 -17.22 2.87 -850.70 -2.44 -19.66 16 3 C 0.12 3.85 5.54 86.38 0.48 4.33 16 4 C 0.15 6.36 6.58 86.38 0.57 6.93 16 5 N -0.75 -37.60 5.41 -343.45 -1.86 -39.46 16 6 C -0.24 -14.74 10.47 84.03 0.88 -13.86 16 7 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 8 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 9 N -0.98 -64.43 13.97 21.65 0.30 -64.13 16 10 Si 0.96 46.32 27.74 68.60 1.90 48.22 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 13 H -0.24 -10.44 6.52 99.48 0.65 -9.80 16 14 C 0.58 19.08 7.44 86.65 0.64 19.72 16 15 O -0.58 -24.02 15.93 -4.07 -0.06 -24.09 16 16 C -0.25 -6.63 5.44 -18.99 -0.10 -6.73 16 17 C -0.19 -3.11 8.84 23.65 0.21 -2.90 16 18 C -0.02 -0.30 12.03 66.89 0.80 0.50 16 19 O -0.18 -3.41 10.23 4.42 0.05 -3.37 16 20 C 0.09 2.19 6.85 25.26 0.17 2.37 16 21 C -0.12 -2.93 5.62 -11.52 -0.06 -3.00 16 22 C -0.15 -3.01 10.23 30.59 0.31 -2.70 16 23 C -0.15 -2.60 10.17 30.62 0.31 -2.29 16 24 H 0.08 1.05 7.42 -2.38 -0.02 1.03 16 25 H 0.08 1.41 8.03 -2.39 -0.02 1.39 16 26 H 0.08 1.39 5.92 -2.39 -0.01 1.37 16 27 H 0.11 2.91 8.07 -2.39 -0.02 2.89 16 28 H 0.07 2.55 7.36 -2.39 -0.02 2.53 16 29 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.37 17.13 5.53 -92.71 -0.51 16.62 16 32 H 0.26 16.15 8.31 -92.70 -0.77 15.37 16 33 H 0.18 1.87 6.66 -2.91 -0.02 1.85 16 34 H 0.26 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.11 3.39 7.89 -2.39 -0.02 3.37 16 36 H 0.11 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.11 1.72 7.96 -2.39 -0.02 1.70 16 Total: -1.00 -81.67 330.68 4.22 -77.45 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.49 Total: 23.37 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.84 Total: 1.67 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -4.00 Total: -123.25 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.02 Total: -27.46 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.90 Total: 48.22 kcal Total: -81.67 4.22 -77.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267419678.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.475 kcal (2) G-P(sol) polarization free energy of solvation -81.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds