Wall clock time and date at job start Tue Mar 31 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00351 * 2 1 4 4 C 1.52994 * 109.47237 * 89.99575 * 3 2 1 5 5 H 1.09001 * 109.47460 * 305.00413 * 4 3 2 6 6 O 1.42899 * 109.47023 * 65.00570 * 4 3 2 7 7 C 1.52999 * 109.47173 * 184.99960 * 4 3 2 8 8 N 1.46500 * 109.47234 * 179.97438 * 7 4 3 9 9 C 1.36941 * 119.99889 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00081 * 359.73343 * 9 8 7 11 11 C 1.38815 * 119.99949 * 179.72559 * 9 8 7 12 12 N 1.31617 * 119.99932 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99752 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47201 * 89.99657 * 13 11 9 15 15 H 1.48504 * 109.46692 * 209.99898 * 13 11 9 16 16 H 1.48494 * 109.47029 * 329.99173 * 13 11 9 17 17 C 1.34784 * 119.99929 * 179.97438 * 2 1 3 18 18 O 1.21549 * 119.99781 * 186.94525 * 17 2 1 19 19 C 1.47839 * 119.99762 * 6.94840 * 17 2 1 20 20 C 1.39574 * 120.14579 * 20.33979 * 19 17 2 21 21 C 1.37958 * 119.84998 * 179.78553 * 20 19 17 22 22 C 1.38361 * 120.15035 * 0.49284 * 21 20 19 23 23 C 1.38366 * 120.28634 * 359.73739 * 22 21 20 24 24 C 1.37953 * 120.14671 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47574 * 85.82096 * 1 2 3 26 26 H 1.09001 * 109.47511 * 205.82143 * 1 2 3 27 27 H 1.09002 * 109.47299 * 325.82488 * 1 2 3 28 28 H 1.09005 * 109.46552 * 329.99536 * 3 2 1 29 29 H 1.09001 * 109.47117 * 210.00269 * 3 2 1 30 30 H 0.96704 * 114.00160 * 59.99964 * 6 4 3 31 31 H 1.09002 * 109.47068 * 60.00580 * 7 4 3 32 32 H 1.09001 * 109.47298 * 300.00553 * 7 4 3 33 33 H 0.96998 * 119.99784 * 359.73645 * 8 7 4 34 34 H 0.97002 * 119.99626 * 180.02562 * 12 11 9 35 35 H 1.07995 * 120.07463 * 0.02562 * 20 19 17 36 36 H 1.08006 * 119.92890 * 180.22957 * 21 20 19 37 37 H 1.07992 * 119.85710 * 179.71622 * 22 21 20 38 38 H 1.07996 * 119.92328 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.07695 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0813 7 6 3.1061 3.0937 1.4442 8 7 3.3496 3.5170 2.8254 9 6 3.9316 4.7308 3.0771 10 1 4.2150 5.3741 2.2572 11 6 4.1572 5.1343 4.3860 12 7 4.7161 6.3011 4.6279 13 14 3.6675 4.0212 5.8040 14 1 4.8027 3.1272 6.1464 15 1 3.3163 4.8499 6.9852 16 1 2.4942 3.2019 5.4078 17 6 2.1388 -1.1673 0.0005 18 8 3.3476 -1.1710 0.1278 19 6 1.4077 -2.4429 -0.1538 20 6 0.1286 -2.4546 -0.7121 21 6 -0.5464 -3.6490 -0.8573 22 6 0.0378 -4.8323 -0.4416 23 6 1.3036 -4.8271 0.1171 24 6 1.9914 -3.6402 0.2635 25 1 -0.3634 0.0749 -1.0249 26 1 -0.3634 -0.9250 0.4476 27 1 -0.3634 0.8502 0.5773 28 1 1.6084 2.0283 -0.5139 29 1 3.1499 1.1383 -0.5139 30 1 4.1837 0.6811 1.6542 31 1 2.4437 3.8092 0.9569 32 1 4.0524 3.0492 0.9052 33 1 3.0955 2.9390 3.5618 34 1 4.8741 6.5829 5.5425 35 1 -0.3302 -1.5312 -1.0333 36 1 -1.5348 -3.6599 -1.2926 37 1 -0.4967 -5.7640 -0.5533 38 1 1.7542 -5.7542 0.4392 39 1 2.9792 -3.6374 0.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284382561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:26 Heat of formation + Delta-G solvation = -17.516610 kcal Electronic energy + Delta-G solvation = -21354.150889 eV Core-core repulsion = 18070.347059 eV Total energy + Delta-G solvation = -3283.803830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66033 -38.66246 -37.25524 -35.58365 -34.09086 -31.95469 -31.30586 -31.25937 -29.46168 -27.36777 -25.89297 -23.52094 -22.82956 -22.06822 -21.20066 -19.92937 -17.68314 -17.55579 -16.95269 -16.62421 -15.97931 -15.36638 -15.12728 -14.80643 -14.57878 -14.43399 -14.00515 -13.79553 -13.45279 -13.29623 -13.16119 -12.85765 -12.54331 -12.35173 -12.21288 -11.73892 -11.57439 -11.19560 -11.13235 -10.82953 -10.78374 -10.15631 -9.98027 -9.74070 -9.54851 -9.27251 -9.20956 -8.88442 -8.58349 -7.20380 -5.74269 -3.09416 0.62908 1.04928 2.69309 2.84768 3.43931 3.49778 3.50921 3.60301 4.26138 4.48004 4.60857 4.64132 4.71255 4.75862 4.87704 4.89103 5.09544 5.10294 5.17158 5.22939 5.42137 5.48951 5.51687 5.58145 5.63476 5.66972 5.87546 5.92616 6.01444 6.06764 6.13175 6.35709 6.46255 6.57849 6.65999 7.23334 8.00235 8.07362 8.16486 8.44936 9.25103 9.97570 10.18114 11.43978 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.003511 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.069325 B = 7973.812812 C = 8222.113099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.606 5.606 3 C 0.087 3.913 4 C 0.082 3.918 5 H 0.094 0.906 6 O -0.549 6.549 7 C 0.130 3.870 8 N -0.749 5.749 9 C -0.246 4.246 10 H 0.089 0.911 11 C 0.005 3.995 12 N -0.935 5.935 13 Si 0.888 3.112 14 H -0.283 1.283 15 H -0.292 1.292 16 H -0.277 1.277 17 C 0.560 3.440 18 O -0.524 6.524 19 C -0.130 4.130 20 C -0.111 4.111 21 C -0.132 4.132 22 C -0.099 4.099 23 C -0.130 4.130 24 C -0.060 4.060 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.377 0.623 31 H 0.033 0.967 32 H 0.030 0.970 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.150 0.850 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.571 -21.756 -13.982 29.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.339 5.339 3 C -0.036 4.036 4 C 0.021 3.979 5 H 0.112 0.888 6 O -0.355 6.355 7 C 0.001 3.999 8 N -0.395 5.395 9 C -0.375 4.375 10 H 0.107 0.893 11 C -0.191 4.191 12 N -0.583 5.583 13 Si 0.718 3.282 14 H -0.210 1.210 15 H -0.218 1.218 16 H -0.203 1.203 17 C 0.349 3.651 18 O -0.401 6.401 19 C -0.133 4.133 20 C -0.129 4.129 21 C -0.150 4.150 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.079 4.079 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.225 0.775 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.200 0.800 34 H 0.069 0.931 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.324 -21.572 -13.555 28.751 hybrid contribution -0.012 -0.516 0.698 0.868 sum -13.336 -22.087 -12.856 28.827 Atomic orbital electron populations 1.22452 0.80048 1.04156 1.01286 1.47555 1.06681 1.05920 1.73702 1.22268 0.98323 0.84434 0.98582 1.22528 0.94501 0.89083 0.91777 0.88833 1.86516 1.29453 1.62534 1.56968 1.21216 0.97656 0.92378 0.88638 1.42578 1.75079 1.20515 1.01374 1.19055 1.31776 0.93109 0.93598 0.89311 1.24663 1.00725 0.96756 0.96971 1.69710 1.48765 1.20315 1.19490 0.86493 0.78629 0.80213 0.82877 1.20971 1.21830 1.20333 1.18267 0.87066 0.83309 0.76454 1.90744 1.13942 1.86843 1.48539 1.19984 0.95542 0.93895 1.03844 1.22306 0.93587 0.99776 0.97260 1.21154 1.00474 0.92359 1.01060 1.21384 0.95229 0.98361 0.96779 1.21170 0.95224 0.98068 1.00359 1.21322 0.99813 0.90998 0.95799 0.91974 0.89510 0.90843 0.89327 0.89303 0.77512 0.94970 0.95238 0.80029 0.93066 0.83261 0.85507 0.85760 0.85406 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.50 8.65 59.84 0.52 1.02 16 2 N -0.61 -7.11 2.86 -182.70 -0.52 -7.63 16 3 C 0.09 1.09 5.12 -4.04 -0.02 1.07 16 4 C 0.08 1.31 3.29 -26.73 -0.09 1.23 16 5 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 6 O -0.55 -10.08 11.76 -49.66 -0.58 -10.66 16 7 C 0.13 2.50 5.92 -4.04 -0.02 2.48 16 8 N -0.75 -18.62 5.30 -59.91 -0.32 -18.94 16 9 C -0.25 -7.18 10.47 -15.06 -0.16 -7.34 16 10 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 11 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 12 N -0.93 -30.06 13.97 55.49 0.78 -29.28 16 13 Si 0.89 23.25 27.74 -169.99 -4.71 18.53 16 14 H -0.28 -7.44 7.11 56.52 0.40 -7.04 16 15 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 16 H -0.28 -6.96 6.52 56.52 0.37 -6.59 16 17 C 0.56 7.70 7.23 -12.33 -0.09 7.61 16 18 O -0.52 -8.86 14.72 -9.11 -0.13 -9.00 16 19 C -0.13 -1.47 5.57 -104.97 -0.58 -2.05 16 20 C -0.11 -0.93 7.61 -39.19 -0.30 -1.23 16 21 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 22 C -0.10 -0.71 10.04 -39.49 -0.40 -1.10 16 23 C -0.13 -1.08 10.03 -39.64 -0.40 -1.48 16 24 C -0.06 -0.65 9.59 -39.18 -0.38 -1.03 16 25 H 0.06 0.34 7.04 -51.93 -0.37 -0.02 16 26 H 0.09 0.64 5.20 -51.93 -0.27 0.37 16 27 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 28 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 29 H 0.09 1.17 7.53 -51.93 -0.39 0.78 16 30 H 0.38 6.47 8.59 45.56 0.39 6.87 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.37 9.21 5.41 -40.82 -0.22 8.99 16 34 H 0.26 7.92 8.31 -40.82 -0.34 7.59 16 35 H 0.15 0.95 4.05 -52.49 -0.21 0.74 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.52 7.79 -52.49 -0.41 1.11 16 LS Contribution 322.88 15.07 4.87 4.87 Total: -1.00 -36.14 322.88 -7.48 -43.63 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -4.45 Total: 10.61 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.41 Total: -2.12 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.06 Total: -55.85 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.72 Total: -19.66 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -4.71 Total: 18.53 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -36.14 -7.48 -43.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284382561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.111 kcal (2) G-P(sol) polarization free energy of solvation -36.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds