Wall clock time and date at job start Tue Mar 31 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 120.00351 * 2 1 4 4 C 1.52994 * 109.47237 * 89.99575 * 3 2 1 5 5 H 1.09001 * 109.47460 * 305.00413 * 4 3 2 6 6 O 1.42899 * 109.47023 * 65.00570 * 4 3 2 7 7 C 1.52999 * 109.47173 * 184.99960 * 4 3 2 8 8 N 1.46500 * 109.47234 * 179.97438 * 7 4 3 9 9 C 1.36941 * 119.99889 * 179.97438 * 8 7 4 10 10 H 1.07998 * 120.00081 * 359.73343 * 9 8 7 11 11 C 1.38815 * 119.99949 * 179.72559 * 9 8 7 12 12 N 1.31617 * 119.99932 * 180.02562 * 11 9 8 13 13 Si 1.86803 * 119.99752 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47201 * 89.99657 * 13 11 9 15 15 H 1.48504 * 109.46692 * 209.99898 * 13 11 9 16 16 H 1.48494 * 109.47029 * 329.99173 * 13 11 9 17 17 C 1.34784 * 119.99929 * 179.97438 * 2 1 3 18 18 O 1.21549 * 119.99781 * 186.94525 * 17 2 1 19 19 C 1.47839 * 119.99762 * 6.94840 * 17 2 1 20 20 C 1.39574 * 120.14579 * 20.33979 * 19 17 2 21 21 C 1.37958 * 119.84998 * 179.78553 * 20 19 17 22 22 C 1.38361 * 120.15035 * 0.49284 * 21 20 19 23 23 C 1.38366 * 120.28634 * 359.73739 * 22 21 20 24 24 C 1.37953 * 120.14671 * 0.02562 * 23 22 21 25 25 H 1.08999 * 109.47574 * 85.82096 * 1 2 3 26 26 H 1.09001 * 109.47511 * 205.82143 * 1 2 3 27 27 H 1.09002 * 109.47299 * 325.82488 * 1 2 3 28 28 H 1.09005 * 109.46552 * 329.99536 * 3 2 1 29 29 H 1.09001 * 109.47117 * 210.00269 * 3 2 1 30 30 H 0.96704 * 114.00160 * 59.99964 * 6 4 3 31 31 H 1.09002 * 109.47068 * 60.00580 * 7 4 3 32 32 H 1.09001 * 109.47298 * 300.00553 * 7 4 3 33 33 H 0.96998 * 119.99784 * 359.73645 * 8 7 4 34 34 H 0.97002 * 119.99626 * 180.02562 * 12 11 9 35 35 H 1.07995 * 120.07463 * 0.02562 * 20 19 17 36 36 H 1.08006 * 119.92890 * 180.22957 * 21 20 19 37 37 H 1.07992 * 119.85710 * 179.71622 * 22 21 20 38 38 H 1.07996 * 119.92328 * 180.02562 * 23 22 21 39 39 H 1.07999 * 120.07695 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4424 5 1 1.5061 1.7550 1.9815 6 8 3.3209 0.7725 2.0813 7 6 3.1061 3.0937 1.4442 8 7 3.3496 3.5170 2.8254 9 6 3.9316 4.7308 3.0771 10 1 4.2150 5.3741 2.2572 11 6 4.1572 5.1343 4.3860 12 7 4.7161 6.3011 4.6279 13 14 3.6675 4.0212 5.8040 14 1 4.8027 3.1272 6.1464 15 1 3.3163 4.8499 6.9852 16 1 2.4942 3.2019 5.4078 17 6 2.1388 -1.1673 0.0005 18 8 3.3476 -1.1710 0.1278 19 6 1.4077 -2.4429 -0.1538 20 6 0.1286 -2.4546 -0.7121 21 6 -0.5464 -3.6490 -0.8573 22 6 0.0378 -4.8323 -0.4416 23 6 1.3036 -4.8271 0.1171 24 6 1.9914 -3.6402 0.2635 25 1 -0.3634 0.0749 -1.0249 26 1 -0.3634 -0.9250 0.4476 27 1 -0.3634 0.8502 0.5773 28 1 1.6084 2.0283 -0.5139 29 1 3.1499 1.1383 -0.5139 30 1 4.1837 0.6811 1.6542 31 1 2.4437 3.8092 0.9569 32 1 4.0524 3.0492 0.9052 33 1 3.0955 2.9390 3.5618 34 1 4.8741 6.5829 5.5425 35 1 -0.3302 -1.5312 -1.0333 36 1 -1.5348 -3.6599 -1.2926 37 1 -0.4967 -5.7640 -0.5533 38 1 1.7542 -5.7542 0.4392 39 1 2.9792 -3.6374 0.7001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284382561.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:25 Heat of formation + Delta-G solvation = -44.151150 kcal Electronic energy + Delta-G solvation = -21355.305849 eV Core-core repulsion = 18070.347059 eV Total energy + Delta-G solvation = -3284.958790 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.52274 -39.52283 -38.52830 -36.64724 -35.97499 -33.51934 -32.64795 -31.90114 -30.75891 -28.26589 -27.24284 -24.82491 -23.57990 -23.33814 -22.68282 -20.79568 -19.82633 -18.37927 -17.92546 -17.61308 -16.88829 -16.63514 -16.47051 -16.28248 -15.63158 -15.37280 -15.29930 -15.01120 -14.58538 -14.45570 -14.32315 -13.92619 -13.82340 -13.57147 -13.28880 -13.06814 -12.88083 -12.64810 -12.37065 -12.28768 -11.96188 -11.87456 -11.74975 -11.18335 -11.05145 -10.86155 -9.95083 -9.84828 -9.56335 -9.33990 -8.06993 -5.39695 -0.06902 0.43457 1.34825 1.38515 1.45119 1.80200 2.00032 2.44725 2.90397 3.23956 3.34848 3.51646 3.68312 3.90875 3.98089 4.03158 4.12174 4.19473 4.24944 4.33865 4.47411 4.51432 4.56572 4.59773 4.73457 4.86116 4.88689 4.90796 5.08478 5.18720 5.35022 5.44651 5.49912 5.53594 5.70668 5.98776 6.17430 6.34222 6.76202 7.04059 7.14146 7.80969 7.99102 9.14419 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.033008 B = 0.003511 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.069325 B = 7973.812812 C = 8222.113099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.604 5.604 3 C 0.095 3.905 4 C 0.092 3.908 5 H 0.096 0.904 6 O -0.567 6.567 7 C 0.125 3.875 8 N -0.755 5.755 9 C -0.235 4.235 10 H 0.061 0.939 11 C -0.061 4.061 12 N -0.981 5.981 13 Si 0.956 3.044 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.259 1.259 17 C 0.550 3.450 18 O -0.572 6.572 19 C -0.156 4.156 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.095 4.095 23 C -0.135 4.135 24 C -0.087 4.087 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.379 0.621 31 H 0.048 0.952 32 H 0.028 0.972 33 H 0.366 0.634 34 H 0.259 0.741 35 H 0.172 0.828 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.144 0.856 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.821 -23.871 -14.992 32.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.335 5.335 3 C -0.029 4.029 4 C 0.031 3.969 5 H 0.114 0.886 6 O -0.374 6.374 7 C -0.002 4.002 8 N -0.401 5.401 9 C -0.366 4.366 10 H 0.079 0.921 11 C -0.253 4.253 12 N -0.632 5.632 13 Si 0.783 3.217 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.184 1.184 17 C 0.340 3.660 18 O -0.452 6.452 19 C -0.159 4.159 20 C -0.126 4.126 21 C -0.147 4.147 22 C -0.113 4.113 23 C -0.153 4.153 24 C -0.106 4.106 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.139 0.861 29 H 0.096 0.904 30 H 0.227 0.773 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.199 0.801 34 H 0.068 0.932 35 H 0.189 0.811 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.162 0.838 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.632 -23.713 -14.609 32.440 hybrid contribution 0.962 0.115 0.893 1.318 sum -15.670 -23.598 -13.716 31.473 Atomic orbital electron populations 1.22768 0.77448 1.04890 1.03602 1.47648 1.08293 1.04893 1.72695 1.22108 0.98970 0.85759 0.96015 1.22494 0.93554 0.86733 0.94106 0.88573 1.86486 1.29942 1.63025 1.57900 1.21445 0.98184 0.94732 0.85803 1.42625 1.74728 1.19044 1.03715 1.19078 1.30623 0.94067 0.92852 0.92096 1.25454 1.01622 0.98378 0.99836 1.69869 1.50846 1.22466 1.20019 0.85399 0.78710 0.78264 0.79278 1.21063 1.21644 1.18377 1.18816 0.86821 0.84635 0.75715 1.90706 1.15982 1.87608 1.50928 1.19953 0.97058 0.92658 1.06199 1.22558 0.92243 1.01491 0.96263 1.21597 1.01588 0.91573 0.99928 1.21811 0.94493 0.99907 0.95063 1.21405 0.95917 0.97691 1.00317 1.21342 0.99605 0.92338 0.97305 0.88719 0.88933 0.90041 0.86062 0.90394 0.77321 0.93422 0.95410 0.80107 0.93215 0.81130 0.82139 0.82722 0.83775 0.86976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 8.65 127.77 1.11 1.77 16 2 N -0.60 -13.15 2.86 -850.21 -2.43 -15.58 16 3 C 0.10 2.22 5.12 86.38 0.44 2.67 16 4 C 0.09 2.83 3.29 30.59 0.10 2.93 16 5 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 6 O -0.57 -20.82 11.76 -135.18 -1.59 -22.41 16 7 C 0.13 4.74 5.92 86.38 0.51 5.25 16 8 N -0.76 -37.10 5.30 -343.45 -1.82 -38.92 16 9 C -0.24 -13.90 10.47 84.03 0.88 -13.02 16 10 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 11 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 12 N -0.98 -64.38 13.97 21.65 0.30 -64.08 16 13 Si 0.96 48.26 27.74 68.60 1.90 50.17 16 14 H -0.28 -14.30 7.11 99.48 0.71 -13.60 16 15 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 16 H -0.26 -12.13 6.52 99.48 0.65 -11.49 16 17 C 0.55 15.10 7.23 86.78 0.63 15.73 16 18 O -0.57 -20.23 14.72 9.93 0.15 -20.09 16 19 C -0.16 -3.42 5.57 -20.09 -0.11 -3.54 16 20 C -0.11 -1.50 7.61 22.53 0.17 -1.33 16 21 C -0.13 -1.30 10.03 22.23 0.22 -1.08 16 22 C -0.09 -1.03 10.04 22.33 0.22 -0.80 16 23 C -0.14 -2.07 10.03 22.23 0.22 -1.84 16 24 C -0.09 -1.91 9.59 22.53 0.22 -1.70 16 25 H 0.09 0.59 7.04 -2.39 -0.02 0.58 16 26 H 0.09 1.07 5.20 -2.39 -0.01 1.06 16 27 H 0.08 0.92 8.10 -2.39 -0.02 0.90 16 28 H 0.12 2.04 8.07 -2.38 -0.02 2.02 16 29 H 0.08 2.03 7.53 -2.39 -0.02 2.01 16 30 H 0.38 13.39 8.59 -74.05 -0.64 12.76 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.37 17.94 5.41 -92.71 -0.50 17.44 16 34 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 35 H 0.17 1.48 4.05 -2.91 -0.01 1.47 16 36 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 37 H 0.16 0.73 8.06 -2.91 -0.02 0.70 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.11 2.83 7.79 -2.91 -0.02 2.80 16 Total: -1.00 -80.77 322.88 1.47 -79.29 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.12 Total: 29.85 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 5.08 Total: 1.76 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -3.95 Total: -118.58 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.44 Total: -42.49 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.90 Total: 50.17 kcal Total: -80.77 1.47 -79.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284382561.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.143 kcal (2) G-P(sol) polarization free energy of solvation -80.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds