Wall clock time and date at job start Tue Mar 31 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 H 1.08998 * 109.47344 * 305.00072 * 4 3 2 6 6 O 1.42909 * 109.47082 * 64.99870 * 4 3 2 7 7 C 1.50702 * 109.47328 * 184.99962 * 4 3 2 8 8 C 1.38661 * 120.41967 * 99.99831 * 7 4 3 9 9 C 1.38635 * 118.42255 * 180.02562 * 8 7 4 10 10 C 1.38226 * 119.15928 * 0.02562 * 9 8 7 11 11 N 1.31853 * 120.76234 * 0.02562 * 10 9 8 12 12 C 1.31889 * 121.73109 * 359.69829 * 11 10 9 13 13 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 14 14 O 1.21283 * 120.00089 * 179.97438 * 13 2 1 15 15 C 1.50702 * 120.00335 * 0.02562 * 13 2 1 16 16 C 1.53003 * 109.47196 * 179.97438 * 15 13 2 17 17 C 1.50702 * 109.47196 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99696 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99997 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99849 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00322 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47055 * 90.00173 * 21 19 17 23 23 H 1.48495 * 109.47483 * 210.00207 * 21 19 17 24 24 H 1.48500 * 109.47125 * 330.00356 * 21 19 17 25 25 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 29 29 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 30 30 H 0.96701 * 113.99408 * 59.99630 * 6 4 3 31 31 H 1.08007 * 120.78892 * 359.97438 * 8 7 4 32 32 H 1.07996 * 120.41752 * 180.02562 * 9 8 7 33 33 H 1.07996 * 119.61827 * 179.97438 * 10 9 8 34 34 H 1.07992 * 119.62304 * 180.31249 * 12 11 10 35 35 H 1.09000 * 109.47188 * 299.99755 * 15 13 2 36 36 H 1.08996 * 109.47042 * 59.99980 * 15 13 2 37 37 H 1.09000 * 109.46913 * 299.99998 * 16 15 13 38 38 H 1.09001 * 109.47340 * 59.99709 * 16 15 13 39 39 H 0.97008 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7548 1.9815 6 8 3.3210 0.7723 2.0814 7 6 3.0963 3.0729 1.4444 8 6 2.3373 4.2077 1.6870 9 6 2.9718 5.4403 1.6784 10 6 4.3303 5.4967 1.4296 11 7 5.0205 4.3966 1.2019 12 6 4.4512 3.2069 1.2075 13 6 2.1388 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0010 15 6 1.3853 -2.4723 -0.0017 16 6 2.3795 -3.6353 -0.0027 17 6 1.6260 -4.9404 -0.0033 18 1 0.5460 -4.9403 -0.0025 19 6 2.3153 -6.1344 -0.0037 20 7 1.6577 -7.2733 -0.0047 21 14 4.1833 -6.1345 -0.0043 22 1 4.6788 -6.1348 1.3956 23 1 4.6781 -7.3468 -0.7047 24 1 4.6782 -4.9219 -0.7043 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 3.1500 1.1383 -0.5139 29 1 1.6085 2.0284 -0.5138 30 1 4.1837 0.6809 1.6541 31 1 1.2767 4.1332 1.8773 32 1 2.4118 6.3449 1.8639 33 1 4.8320 6.4530 1.4208 34 1 5.0500 2.3276 1.0217 35 1 0.7583 -2.5307 0.8880 36 1 0.7590 -2.5294 -0.8919 37 1 3.0062 -3.5767 -0.8927 38 1 3.0062 -3.5783 0.8873 39 1 2.1427 -8.1134 -0.0053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001304815159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:11 Heat of formation + Delta-G solvation = -53.017759 kcal Electronic energy + Delta-G solvation = -21263.457497 eV Core-core repulsion = 17978.114221 eV Total energy + Delta-G solvation = -3285.343275 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.74194 -39.55430 -37.29208 -35.09602 -33.49397 -33.08223 -31.84248 -31.30004 -29.11172 -26.66767 -26.05567 -24.11469 -23.88354 -21.90263 -20.87066 -18.77627 -17.89472 -17.27025 -16.83664 -16.75858 -16.10302 -16.03567 -15.36508 -14.81181 -14.48864 -14.32895 -14.02347 -13.98586 -13.43582 -13.24227 -13.04150 -12.56998 -12.54371 -12.38248 -12.31641 -11.81555 -11.73946 -11.33428 -10.94337 -10.57651 -10.18989 -10.09158 -10.01632 -9.77710 -9.74681 -9.41390 -9.20645 -9.12409 -8.49936 -8.45739 -6.01122 -3.99657 0.71291 0.90826 3.05614 3.17719 3.40113 3.45243 3.46455 3.57113 4.05671 4.26094 4.41968 4.46360 4.52993 4.57124 4.66930 4.78143 4.90749 5.08331 5.12765 5.27114 5.34571 5.36612 5.39802 5.46936 5.64786 5.69488 5.73743 5.96245 6.07657 6.13428 6.30732 6.56970 6.71115 7.39578 7.46454 7.53110 7.59959 7.62979 7.81633 8.51103 8.63721 9.01854 9.62159 11.11747 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032611 B = 0.003536 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.400642 B = 7916.674306 C = 8536.634518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.624 5.624 3 C 0.090 3.910 4 C 0.137 3.863 5 H 0.107 0.893 6 O -0.540 6.540 7 C -0.165 4.165 8 C -0.066 4.066 9 C -0.172 4.172 10 C 0.095 3.905 11 N -0.481 5.481 12 C 0.110 3.890 13 C 0.518 3.482 14 O -0.535 6.535 15 C -0.120 4.120 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.068 3.932 20 N -0.905 5.905 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.380 0.620 31 H 0.136 0.864 32 H 0.136 0.864 33 H 0.156 0.844 34 H 0.155 0.845 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.020 0.980 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 26.759 1.652 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.034 4.034 4 C 0.075 3.925 5 H 0.125 0.875 6 O -0.346 6.346 7 C -0.168 4.168 8 C -0.092 4.092 9 C -0.192 4.192 10 C -0.062 4.062 11 N -0.189 5.189 12 C -0.047 4.047 13 C 0.309 3.691 14 O -0.411 6.411 15 C -0.159 4.159 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.133 4.133 20 N -0.543 5.543 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.229 0.771 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.172 0.828 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.713 26.537 1.866 26.612 hybrid contribution 0.252 0.077 -0.140 0.299 sum -0.461 26.613 1.726 26.673 Atomic orbital electron populations 1.21805 0.79519 1.03242 1.01836 1.47903 1.06791 1.05454 1.75773 1.22069 0.99140 0.86298 0.95920 1.21185 0.93608 0.83300 0.94374 0.87512 1.86655 1.29808 1.61968 1.56200 1.21638 0.96141 0.97332 1.01654 1.21465 1.00403 0.91809 0.95509 1.22155 0.96437 0.98626 1.01971 1.22832 0.91475 0.97142 0.94774 1.67727 1.40052 0.98702 1.12428 1.22585 0.91993 0.95565 0.94539 1.21475 0.88346 0.85453 0.73822 1.90588 1.14464 1.87277 1.48758 1.21680 1.00235 0.91024 1.02993 1.19369 0.94448 0.92141 0.97622 1.21115 0.94938 0.88911 1.51231 0.91003 1.24972 0.98504 0.95450 0.94346 1.69917 1.35827 0.97419 1.51181 0.86786 0.86202 0.77738 0.78760 1.20219 1.21509 1.18539 0.92747 0.91672 0.90151 0.89485 0.90126 0.77138 0.84636 0.84618 0.82712 0.82789 0.89681 0.89797 0.95930 0.96192 0.92748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.29 59.85 0.62 1.38 16 2 N -0.62 -8.24 2.86 -181.57 -0.52 -8.76 16 3 C 0.09 0.98 5.14 -4.04 -0.02 0.96 16 4 C 0.14 1.45 3.47 -27.88 -0.10 1.35 16 5 H 0.11 1.05 8.03 -51.93 -0.42 0.64 16 6 O -0.54 -7.50 12.06 -42.91 -0.52 -8.02 16 7 C -0.16 -1.56 4.98 -104.48 -0.52 -2.08 16 8 C -0.07 -0.50 9.82 -39.28 -0.39 -0.89 16 9 C -0.17 -1.20 10.11 -39.44 -0.40 -1.60 16 10 C 0.09 0.80 11.18 -17.55 -0.20 0.60 16 11 N -0.48 -5.32 10.36 -13.25 -0.14 -5.45 16 12 C 0.11 1.16 10.49 -17.54 -0.18 0.98 16 13 C 0.52 9.33 7.30 -10.99 -0.08 9.25 16 14 O -0.54 -11.22 14.54 -2.12 -0.03 -11.25 16 15 C -0.12 -2.33 4.19 -27.88 -0.12 -2.45 16 16 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 17 C -0.52 -15.06 9.66 -34.44 -0.33 -15.40 16 18 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 19 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 20 N -0.90 -28.18 13.96 55.43 0.77 -27.40 16 21 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 22 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.26 -6.71 6.54 56.52 0.37 -6.34 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.45 7.89 -51.93 -0.41 0.04 16 27 H 0.08 0.80 6.44 -51.93 -0.33 0.47 16 28 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 29 H 0.08 0.67 7.89 -51.93 -0.41 0.26 16 30 H 0.38 4.80 7.23 45.56 0.33 5.13 16 31 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 32 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.15 1.49 6.79 -52.49 -0.36 1.14 16 35 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 36 H 0.08 1.51 7.40 -51.93 -0.38 1.12 16 37 H 0.02 0.59 7.16 -51.93 -0.37 0.22 16 38 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 39 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -35.90 327.95 -6.89 -42.80 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -4.83 Total: 1.07 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -1.91 Total: -6.00 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: 0.12 Total: -41.62 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.55 Total: -19.28 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -35.90 -6.89 -42.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304815159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.220 kcal (2) G-P(sol) polarization free energy of solvation -35.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds