Wall clock time and date at job start Tue Mar 31 2020 01:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46501 * 120.00098 * 2 1 4 4 C 1.52995 * 109.46937 * 90.00021 * 3 2 1 5 5 H 1.08998 * 109.47344 * 305.00072 * 4 3 2 6 6 O 1.42909 * 109.47082 * 64.99870 * 4 3 2 7 7 C 1.50702 * 109.47328 * 184.99962 * 4 3 2 8 8 C 1.38661 * 120.41967 * 99.99831 * 7 4 3 9 9 C 1.38635 * 118.42255 * 180.02562 * 8 7 4 10 10 C 1.38226 * 119.15928 * 0.02562 * 9 8 7 11 11 N 1.31853 * 120.76234 * 0.02562 * 10 9 8 12 12 C 1.31889 * 121.73109 * 359.69829 * 11 10 9 13 13 C 1.34771 * 119.99594 * 180.02562 * 2 1 3 14 14 O 1.21283 * 120.00089 * 179.97438 * 13 2 1 15 15 C 1.50702 * 120.00335 * 0.02562 * 13 2 1 16 16 C 1.53003 * 109.47196 * 179.97438 * 15 13 2 17 17 C 1.50702 * 109.47196 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99696 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99997 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99849 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00322 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47055 * 90.00173 * 21 19 17 23 23 H 1.48495 * 109.47483 * 210.00207 * 21 19 17 24 24 H 1.48500 * 109.47125 * 330.00356 * 21 19 17 25 25 H 1.09001 * 109.47060 * 270.00243 * 1 2 3 26 26 H 1.09004 * 109.47073 * 29.99732 * 1 2 3 27 27 H 1.09000 * 109.47212 * 149.99814 * 1 2 3 28 28 H 1.09000 * 109.46877 * 210.00112 * 3 2 1 29 29 H 1.09000 * 109.47251 * 330.00217 * 3 2 1 30 30 H 0.96701 * 113.99408 * 59.99630 * 6 4 3 31 31 H 1.08007 * 120.78892 * 359.97438 * 8 7 4 32 32 H 1.07996 * 120.41752 * 180.02562 * 9 8 7 33 33 H 1.07996 * 119.61827 * 179.97438 * 10 9 8 34 34 H 1.07992 * 119.62304 * 180.31249 * 12 11 10 35 35 H 1.09000 * 109.47188 * 299.99755 * 15 13 2 36 36 H 1.08996 * 109.47042 * 59.99980 * 15 13 2 37 37 H 1.09000 * 109.46913 * 299.99998 * 16 15 13 38 38 H 1.09001 * 109.47340 * 59.99709 * 16 15 13 39 39 H 0.97008 * 119.99958 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5063 1.7548 1.9815 6 8 3.3210 0.7723 2.0814 7 6 3.0963 3.0729 1.4444 8 6 2.3373 4.2077 1.6870 9 6 2.9718 5.4403 1.6784 10 6 4.3303 5.4967 1.4296 11 7 5.0205 4.3966 1.2019 12 6 4.4512 3.2069 1.2075 13 6 2.1388 -1.1672 -0.0005 14 8 3.3517 -1.1673 -0.0010 15 6 1.3853 -2.4723 -0.0017 16 6 2.3795 -3.6353 -0.0027 17 6 1.6260 -4.9404 -0.0033 18 1 0.5460 -4.9403 -0.0025 19 6 2.3153 -6.1344 -0.0037 20 7 1.6577 -7.2733 -0.0047 21 14 4.1833 -6.1345 -0.0043 22 1 4.6788 -6.1348 1.3956 23 1 4.6781 -7.3468 -0.7047 24 1 4.6782 -4.9219 -0.7043 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 3.1500 1.1383 -0.5139 29 1 1.6085 2.0284 -0.5138 30 1 4.1837 0.6809 1.6541 31 1 1.2767 4.1332 1.8773 32 1 2.4118 6.3449 1.8639 33 1 4.8320 6.4530 1.4208 34 1 5.0500 2.3276 1.0217 35 1 0.7583 -2.5307 0.8880 36 1 0.7590 -2.5294 -0.8919 37 1 3.0062 -3.5767 -0.8927 38 1 3.0062 -3.5783 0.8873 39 1 2.1427 -8.1134 -0.0053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001304815159.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:39:10 Heat of formation + Delta-G solvation = -79.194900 kcal Electronic energy + Delta-G solvation = -21264.592623 eV Core-core repulsion = 17978.114221 eV Total energy + Delta-G solvation = -3286.478401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.49394 -40.71734 -38.29072 -36.23159 -35.54732 -33.81549 -33.31382 -32.46311 -30.11843 -28.06245 -27.26435 -25.17006 -24.54670 -23.03709 -22.33343 -20.11407 -19.13459 -18.63686 -17.85221 -17.62208 -17.27618 -17.11444 -16.44441 -16.22837 -15.87154 -15.32753 -15.13703 -14.88635 -14.72216 -14.30855 -14.29832 -13.99757 -13.74184 -13.41549 -13.28394 -13.08896 -12.91189 -12.68394 -12.55660 -12.01600 -11.93569 -11.75964 -11.47659 -11.38373 -10.83162 -10.77725 -10.65759 -10.40290 -10.08335 -9.49498 -8.31397 -6.33988 0.07263 0.30383 1.33541 1.35005 1.50213 1.74116 2.08115 2.35271 2.79072 3.04453 3.36005 3.47941 3.68729 3.78435 3.89140 3.92573 4.07158 4.13982 4.24538 4.36217 4.39664 4.48518 4.54335 4.60952 4.76399 4.77207 4.85720 4.94445 5.07428 5.15517 5.27484 5.34680 5.46066 5.60993 5.61426 5.72788 6.23688 6.39525 6.62037 6.72254 6.97825 7.29944 7.31432 8.84309 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.032611 B = 0.003536 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.400642 B = 7916.674306 C = 8536.634518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.613 5.613 3 C 0.090 3.910 4 C 0.142 3.858 5 H 0.120 0.880 6 O -0.566 6.566 7 C -0.170 4.170 8 C -0.064 4.064 9 C -0.163 4.163 10 C 0.082 3.918 11 N -0.514 5.514 12 C 0.088 3.912 13 C 0.515 3.485 14 O -0.575 6.575 15 C -0.114 4.114 16 C 0.008 3.992 17 C -0.528 4.528 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.944 5.944 21 Si 0.938 3.062 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.261 1.261 25 H 0.066 0.934 26 H 0.102 0.898 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.117 0.883 30 H 0.380 0.620 31 H 0.166 0.834 32 H 0.171 0.829 33 H 0.178 0.822 34 H 0.146 0.854 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.009 0.991 38 H 0.006 0.994 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.856 29.635 1.805 29.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C -0.033 4.033 4 C 0.081 3.919 5 H 0.138 0.862 6 O -0.373 6.373 7 C -0.173 4.173 8 C -0.090 4.090 9 C -0.183 4.183 10 C -0.074 4.074 11 N -0.223 5.223 12 C -0.068 4.068 13 C 0.305 3.695 14 O -0.454 6.454 15 C -0.154 4.154 16 C -0.030 4.030 17 C -0.566 4.566 18 H 0.068 0.932 19 C -0.184 4.184 20 N -0.585 5.585 21 Si 0.763 3.237 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.185 1.185 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.229 0.771 31 H 0.183 0.817 32 H 0.188 0.812 33 H 0.195 0.805 34 H 0.163 0.837 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.826 29.450 2.019 29.576 hybrid contribution 0.468 -0.704 -0.179 0.864 sum -1.359 28.747 1.840 28.838 Atomic orbital electron populations 1.22118 0.76969 1.04949 1.03201 1.47838 1.08370 1.04770 1.73625 1.22234 0.98727 0.85737 0.96597 1.21239 0.93543 0.83298 0.93818 0.86210 1.86606 1.30306 1.63239 1.57184 1.21492 0.95748 0.97384 1.02644 1.21852 1.01744 0.91204 0.94219 1.22533 0.95889 0.99742 1.00113 1.23355 0.92609 0.97252 0.94203 1.67695 1.41345 0.99480 1.13806 1.22579 0.92824 0.95525 0.95855 1.21089 0.87731 0.86373 0.74267 1.90576 1.15906 1.87946 1.51014 1.21487 0.99164 0.90418 1.04290 1.19200 0.94971 0.92697 0.96176 1.21439 0.94307 0.90664 1.50200 0.93204 1.25798 1.03081 0.95252 0.94292 1.70026 1.37690 0.98137 1.52605 0.85827 0.80824 0.77958 0.79087 1.19518 1.20318 1.18523 0.91501 0.87962 0.90590 0.91446 0.86516 0.77117 0.81664 0.81170 0.80483 0.83674 0.88699 0.88274 0.97231 0.97560 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.10 10.29 127.77 1.31 2.42 16 2 N -0.61 -14.94 2.86 -846.74 -2.42 -17.36 16 3 C 0.09 1.79 5.14 86.38 0.44 2.23 16 4 C 0.14 2.76 3.47 29.85 0.10 2.86 16 5 H 0.12 1.99 8.03 -2.39 -0.02 1.97 16 6 O -0.57 -15.78 12.06 -141.64 -1.71 -17.49 16 7 C -0.17 -2.94 4.98 -19.77 -0.10 -3.04 16 8 C -0.06 -0.76 9.82 22.47 0.22 -0.54 16 9 C -0.16 -1.70 10.11 22.36 0.23 -1.48 16 10 C 0.08 1.22 11.18 84.69 0.95 2.17 16 11 N -0.51 -11.16 10.36 -195.84 -2.03 -13.19 16 12 C 0.09 1.87 10.49 84.67 0.89 2.76 16 13 C 0.52 18.27 7.30 87.66 0.64 18.91 16 14 O -0.58 -24.46 14.54 4.30 0.06 -24.40 16 15 C -0.11 -4.40 4.19 29.85 0.13 -4.27 16 16 C 0.01 0.38 3.33 29.85 0.10 0.48 16 17 C -0.53 -30.86 9.66 25.60 0.25 -30.62 16 18 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 19 C 0.01 0.80 5.47 84.65 0.46 1.27 16 20 N -0.94 -59.65 13.96 21.44 0.30 -59.35 16 21 Si 0.94 47.48 27.47 68.60 1.88 49.36 16 22 H -0.27 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.26 -13.10 6.54 99.48 0.65 -12.45 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.10 0.92 7.89 -2.38 -0.02 0.90 16 27 H 0.08 1.31 6.44 -2.39 -0.02 1.30 16 28 H 0.07 1.65 7.42 -2.39 -0.02 1.63 16 29 H 0.12 1.49 7.89 -2.39 -0.02 1.47 16 30 H 0.38 10.19 7.23 -74.06 -0.54 9.65 16 31 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.17 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.15 3.08 6.79 -2.91 -0.02 3.06 16 35 H 0.09 3.44 8.11 -2.39 -0.02 3.42 16 36 H 0.10 3.47 7.40 -2.39 -0.02 3.46 16 37 H 0.01 0.49 7.16 -2.39 -0.02 0.48 16 38 H 0.01 0.32 7.53 -2.39 -0.02 0.30 16 39 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 Total: -1.00 -79.61 327.95 2.17 -77.44 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 0.46 Total: 11.83 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: 5.62 Total: -6.84 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -4.15 Total: -89.90 kcal Atomic # 8 Polarization: -40.25 SS G_CDS: -1.65 Total: -41.89 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.88 Total: 49.36 kcal Total: -79.61 2.17 -77.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001304815159.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.758 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds