Wall clock time and date at job start Tue Mar 31 2020 01:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36942 * 119.99674 * 2 1 4 4 H 1.08000 * 119.99612 * 203.04498 * 3 2 1 5 5 C 1.38807 * 120.00140 * 23.04165 * 3 2 1 6 6 N 1.31624 * 119.99824 * 12.93645 * 5 3 2 7 7 Si 1.86806 * 120.00166 * 192.93855 * 5 3 2 8 8 H 1.48501 * 109.46616 * 0.02562 * 7 5 3 9 9 H 1.48498 * 109.46931 * 120.00033 * 7 5 3 10 10 H 1.48493 * 109.47131 * 240.00182 * 7 5 3 11 11 C 1.46496 * 120.00395 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.46963 * 90.00305 * 11 2 1 13 13 N 1.46503 * 109.47173 * 180.02562 * 12 11 2 14 14 C 1.34774 * 120.00163 * 180.02562 * 13 12 11 15 15 O 1.21618 * 119.99767 * 359.97438 * 14 13 12 16 16 C 1.47371 * 120.00072 * 179.97438 * 14 13 12 17 17 C 1.47023 * 127.19498 * 0.16060 * 16 14 13 18 18 C 1.34171 * 105.95536 * 180.25826 * 17 16 14 19 19 O 1.34214 * 109.12692 * 359.75502 * 18 17 16 20 20 C 1.33650 * 110.90761 * 359.97438 * 19 18 17 21 21 C 1.50694 * 125.80160 * 179.97438 * 20 19 18 22 22 C 1.53003 * 117.50074 * 300.02537 * 21 20 19 23 23 C 1.53000 * 60.02924 * 107.47863 * 22 21 20 24 24 H 1.08995 * 109.47565 * 275.12154 * 1 2 3 25 25 H 1.09001 * 109.47637 * 35.12697 * 1 2 3 26 26 H 1.09006 * 109.46751 * 155.12336 * 1 2 3 27 27 H 0.97005 * 119.99934 * 179.97438 * 6 5 3 28 28 H 1.09004 * 109.47174 * 330.00431 * 11 2 1 29 29 H 1.09001 * 109.47468 * 210.00050 * 11 2 1 30 30 H 1.08990 * 109.46965 * 59.99979 * 12 11 2 31 31 H 1.09001 * 109.46821 * 300.00141 * 12 11 2 32 32 H 0.97005 * 119.99610 * 359.97438 * 13 12 11 33 33 H 1.08006 * 127.02404 * 0.04426 * 17 16 14 34 34 H 1.08012 * 125.43922 * 179.79050 * 18 17 16 35 35 H 1.09009 * 115.56135 * 154.34079 * 21 20 19 36 36 H 1.09005 * 117.49807 * 214.98080 * 22 21 20 37 37 H 1.08997 * 117.49800 * 359.97438 * 22 21 20 38 38 H 1.08997 * 117.49686 * 107.50203 * 23 22 21 39 39 H 1.09001 * 117.49991 * 252.51728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1650 1.2233 -0.3661 5 6 1.5386 2.3401 0.4705 6 7 0.4117 2.2597 1.1458 7 14 2.3156 4.0075 0.1452 8 1 3.5690 3.8265 -0.6303 9 1 1.3712 4.8507 -0.6309 10 1 2.6239 4.6705 1.4376 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7109 -1.4418 13 7 3.1847 -2.9799 -1.4413 14 6 3.5221 -3.5637 -2.6082 15 8 3.2184 -3.0373 -3.6616 16 6 4.2590 -4.8400 -2.6077 17 6 4.7001 -5.6111 -1.4362 18 6 5.3318 -6.6906 -1.9217 19 8 5.3092 -6.6471 -3.2630 20 6 4.6711 -5.5547 -3.6941 21 6 4.4515 -5.1732 -5.1353 22 6 5.6911 -4.9613 -6.0068 23 6 4.8218 -6.2049 -6.2037 24 1 -0.3634 0.0917 1.0235 25 1 -0.3634 0.8405 -0.5913 26 1 -0.3633 -0.9324 -0.4323 27 1 -0.0152 3.0662 1.4750 28 1 1.6085 -2.0282 0.5147 29 1 3.1500 -1.1381 0.5143 30 1 3.0416 -0.9514 -1.9558 31 1 1.5002 -1.8414 -1.9556 32 1 3.4272 -3.3995 -0.6010 33 1 4.5498 -5.3583 -0.3969 34 1 5.7857 -7.4705 -1.3281 35 1 3.5869 -4.5377 -5.3271 36 1 5.6420 -4.1865 -6.7719 37 1 6.6655 -5.0975 -5.5376 38 1 4.2008 -6.2482 -7.0984 39 1 5.2242 -7.1592 -5.8638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317458384.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:39 Heat of formation + Delta-G solvation = 26.734061 kcal Electronic energy + Delta-G solvation = -20919.243044 eV Core-core repulsion = 17637.358068 eV Total energy + Delta-G solvation = -3281.884977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.74995 -39.11261 -37.29279 -36.02234 -34.13585 -33.00552 -31.25755 -29.88398 -28.18042 -25.86123 -24.42943 -23.10836 -22.74925 -22.47103 -20.72865 -20.55636 -19.56993 -17.96026 -16.69988 -16.43952 -16.10698 -15.66190 -15.47477 -14.87923 -14.84919 -14.55318 -13.73790 -13.61390 -13.24764 -13.05864 -12.72595 -12.45548 -12.31298 -12.22487 -11.81674 -11.17829 -11.13559 -10.88212 -10.86180 -10.69071 -10.58500 -10.33065 -9.94622 -9.93714 -9.91668 -9.71621 -8.77434 -8.57049 -8.51193 -6.78971 -5.73683 -3.21781 1.23682 1.91437 2.57346 3.38383 3.42777 3.45286 3.47604 3.52038 3.70967 4.14877 4.50371 4.51042 4.69662 4.72741 4.78143 5.08022 5.25708 5.36928 5.40303 5.54629 5.55956 5.64541 5.81925 5.83511 5.85114 5.90985 5.95370 6.12419 6.27371 6.62929 6.67080 6.77827 6.85113 6.93274 7.37231 7.71757 7.80909 7.81257 8.37575 8.49313 9.21862 9.84229 10.32365 11.31168 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027723 B = 0.003248 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.741451 B = 8618.579690 C = 9035.604231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.597 5.597 3 C -0.259 4.259 4 H 0.070 0.930 5 C 0.003 3.997 6 N -0.906 5.906 7 Si 0.905 3.095 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.144 3.856 12 C 0.096 3.904 13 N -0.716 5.716 14 C 0.583 3.417 15 O -0.544 6.544 16 C -0.231 4.231 17 C -0.187 4.187 18 C -0.042 4.042 19 O -0.177 6.177 20 C 0.102 3.898 21 C -0.086 4.086 22 C -0.159 4.159 23 C -0.172 4.172 24 H 0.033 0.967 25 H 0.042 0.958 26 H -0.001 1.001 27 H 0.252 0.748 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.396 0.604 33 H 0.159 0.841 34 H 0.208 0.792 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -19.690 -7.887 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.320 5.320 3 C -0.388 4.388 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.551 5.551 7 Si 0.735 3.265 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.015 3.985 12 C -0.030 4.030 13 N -0.366 5.366 14 C 0.370 3.630 15 O -0.424 6.424 16 C -0.235 4.235 17 C -0.206 4.206 18 C -0.107 4.107 19 O -0.073 6.073 20 C 0.049 3.951 21 C -0.104 4.104 22 C -0.196 4.196 23 C -0.209 4.209 24 H 0.051 0.949 25 H 0.061 0.939 26 H 0.018 0.982 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.176 0.824 34 H 0.224 0.776 35 H 0.170 0.830 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.123 0.877 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.219 -19.333 -8.711 23.122 hybrid contribution 0.402 0.828 0.689 1.150 sum 9.621 -18.505 -8.022 22.346 Atomic orbital electron populations 1.20839 0.82309 0.95613 0.99609 1.43790 1.01954 1.00313 1.85961 1.19249 0.98384 0.85507 1.35704 0.91266 1.25032 0.97831 0.98615 0.98032 1.70086 1.19410 1.27172 1.38452 0.86169 0.78656 0.84148 0.77494 1.20231 1.21529 1.21693 1.20838 0.96723 0.89164 0.91763 1.22433 0.95615 0.82859 1.02088 1.45876 1.57972 1.25012 1.07722 1.17190 0.78630 0.82960 0.84212 1.90746 1.55713 1.64804 1.31130 1.21227 1.10098 0.99512 0.92709 1.22913 1.02777 0.95606 0.99284 1.23826 1.05218 1.01753 0.79920 1.83700 1.60670 1.39608 1.23363 1.21674 0.93860 0.84888 0.94673 1.20833 1.02501 1.04249 0.82773 1.23050 0.94621 1.00220 1.01732 1.23077 1.03571 0.94329 0.99948 0.94868 0.93928 0.98249 0.93754 0.94102 0.92951 0.91465 0.92157 0.77032 0.82373 0.77563 0.82959 0.87480 0.88493 0.87737 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.12 2.92 -181.12 -0.53 -15.65 16 3 C -0.26 -7.18 9.65 -15.06 -0.15 -7.33 16 4 H 0.07 1.89 7.86 -52.49 -0.41 1.47 16 5 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 6 N -0.91 -26.55 10.71 55.49 0.59 -25.96 16 7 Si 0.91 22.05 29.57 -169.99 -5.03 17.03 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.14 2.88 5.76 -4.04 -0.02 2.86 16 12 C 0.10 1.81 6.00 -4.04 -0.02 1.78 16 13 N -0.72 -11.10 5.55 -61.40 -0.34 -11.44 16 14 C 0.58 9.66 7.81 -12.55 -0.10 9.57 16 15 O -0.54 -10.70 14.93 5.26 0.08 -10.62 16 16 C -0.23 -3.16 6.31 -103.28 -0.65 -3.81 16 17 C -0.19 -1.90 10.60 -37.46 -0.40 -2.30 16 18 C -0.04 -0.36 12.03 29.30 0.35 -0.01 16 19 O -0.18 -1.94 10.23 7.66 0.08 -1.87 16 20 C 0.10 1.30 6.85 -34.97 -0.24 1.06 16 21 C -0.09 -1.00 5.62 -91.74 -0.52 -1.52 16 22 C -0.16 -1.51 10.23 -26.73 -0.27 -1.78 16 23 C -0.17 -1.49 10.17 -26.70 -0.27 -1.77 16 24 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 25 H 0.04 1.14 7.34 -51.93 -0.38 0.75 16 26 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.05 1.03 8.04 -51.93 -0.42 0.61 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.40 4.93 7.64 -40.82 -0.31 4.62 16 33 H 0.16 1.22 7.74 -52.48 -0.41 0.81 16 34 H 0.21 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.15 2.03 6.68 -51.92 -0.35 1.68 16 36 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.10 0.82 7.96 -51.93 -0.41 0.40 16 LS Contribution 334.14 15.07 5.04 5.04 Total: -1.00 -33.09 334.14 -7.53 -40.62 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -5.58 Total: 1.56 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.84 Total: 1.30 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.28 Total: -53.05 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.16 Total: -12.49 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.09 -7.53 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317458384.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.353 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds