Wall clock time and date at job start Tue Mar 31 2020 01:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35712 * 117.00501 * 2 1 4 4 C 1.38994 * 119.91429 * 180.02562 * 3 2 1 5 5 C 1.37705 * 120.08833 * 180.30014 * 4 3 2 6 6 C 1.39728 * 119.90880 * 359.45372 * 5 4 3 7 7 C 1.47603 * 120.08631 * 180.27675 * 6 5 4 8 8 O 1.21588 * 120.00026 * 180.26813 * 7 6 5 9 9 N 1.34778 * 120.00183 * 0.26762 * 7 6 5 10 10 C 1.46500 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46653 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99718 * 90.00092 * 12 11 10 14 14 C 1.36931 * 120.00090 * 270.00018 * 12 11 10 15 15 H 1.07998 * 120.00251 * 23.04678 * 14 12 11 16 16 C 1.38813 * 119.99980 * 203.04612 * 14 12 11 17 17 N 1.31618 * 120.00242 * 12.92705 * 16 14 12 18 18 Si 1.86805 * 120.00027 * 192.92926 * 16 14 12 19 19 H 1.48499 * 109.47162 * 89.99768 * 18 16 14 20 20 H 1.48496 * 109.47157 * 210.00187 * 18 16 14 21 21 H 1.48503 * 109.47174 * 329.99851 * 18 16 14 22 22 C 1.39736 * 119.82872 * 0.54436 * 6 5 4 23 23 C 1.37706 * 119.90560 * 359.73028 * 22 6 5 24 24 H 1.08998 * 109.47756 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47117 * 299.99843 * 1 2 3 26 26 H 1.09003 * 109.47022 * 59.99068 * 1 2 3 27 27 H 1.08000 * 119.95625 * 0.02562 * 4 3 2 28 28 H 1.08004 * 120.04026 * 179.69686 * 5 4 3 29 29 H 0.96993 * 119.99697 * 0.02562 * 9 7 6 30 30 H 1.08994 * 109.47513 * 299.99973 * 10 9 7 31 31 H 1.08996 * 109.47469 * 60.00361 * 10 9 7 32 32 H 1.09003 * 109.47018 * 299.99997 * 11 10 9 33 33 H 1.09002 * 109.47244 * 59.99806 * 11 10 9 34 34 H 1.08997 * 109.47265 * 95.12415 * 13 12 11 35 35 H 1.09007 * 109.46423 * 215.12244 * 13 12 11 36 36 H 1.09000 * 109.47294 * 335.11760 * 13 12 11 37 37 H 0.96998 * 120.00113 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.05051 * 179.71078 * 22 6 5 39 39 H 1.07999 * 119.95073 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4333 1.2797 -0.0005 5 6 4.0623 2.5047 0.0057 6 6 3.3031 3.6777 0.0010 7 6 3.9733 4.9928 0.0015 8 8 3.3112 6.0126 0.0024 9 7 5.3193 5.0633 0.0010 10 6 5.9844 6.3687 0.0021 11 6 7.5012 6.1681 0.0019 12 7 8.1663 7.4734 0.0023 13 6 8.4990 8.1255 1.2713 14 6 8.4771 8.0838 -1.1833 15 1 7.9350 7.8269 -2.0814 16 6 9.4889 9.0329 -1.2310 17 7 10.3149 9.1660 -0.2149 18 14 9.6784 10.1214 -2.7373 19 1 8.8696 11.3544 -2.5619 20 1 11.1076 10.4868 -2.9074 21 1 9.2085 9.3881 -3.9402 22 6 1.9078 3.6026 0.0016 23 6 1.2864 2.3737 0.0011 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 4.0194 0.3726 -0.0014 28 1 5.1410 2.5586 0.0102 29 1 5.8475 4.2498 0.0000 30 1 5.6912 6.9266 -0.8871 31 1 5.6919 6.9248 0.8927 32 1 7.7940 5.6103 0.8914 33 1 7.7940 5.6117 -0.8886 34 1 9.5295 7.8933 1.5399 35 1 8.3852 9.2045 1.1661 36 1 7.8297 7.7640 2.0521 37 1 11.0221 9.8290 -0.2484 38 1 1.3175 4.5070 0.0027 39 1 0.2080 2.3148 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317467955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:24 Heat of formation + Delta-G solvation = -22.666441 kcal Electronic energy + Delta-G solvation = -20551.654739 eV Core-core repulsion = 17267.627595 eV Total energy + Delta-G solvation = -3284.027143 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -40.60270 -39.38749 -37.25349 -36.02652 -34.22558 -31.60262 -31.35165 -30.57240 -28.13002 -27.60232 -25.84984 -24.05395 -22.83930 -22.54776 -20.67490 -20.21455 -18.65114 -17.56641 -16.66052 -16.52578 -16.14945 -15.55087 -15.14753 -15.05306 -14.70716 -14.03868 -13.88228 -13.74574 -13.72742 -13.27892 -12.90298 -12.69039 -12.45490 -12.34965 -12.25680 -11.40071 -11.18878 -11.11014 -10.88064 -10.85886 -10.58702 -10.34194 -9.96119 -9.92799 -9.74118 -9.36367 -8.78575 -8.56096 -8.45086 -6.79460 -5.73571 -3.21838 0.73695 1.06646 2.85129 2.88084 3.38081 3.40882 3.46345 3.48098 3.76407 4.44152 4.50165 4.51070 4.70203 4.73892 4.82973 4.97589 5.06006 5.10756 5.27406 5.40173 5.63661 5.70320 5.81020 5.85773 5.93282 6.00713 6.16477 6.26724 6.33388 6.60316 6.65930 6.77120 6.89792 6.98152 7.37172 7.71582 7.75365 7.80836 8.37220 8.44434 9.21778 9.84086 10.32225 11.31268 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040245 B = 0.002764 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.563966 B =10129.473042 C =10227.523922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.147 3.853 4 C -0.159 4.159 5 C -0.046 4.046 6 C -0.167 4.167 7 C 0.554 3.446 8 O -0.544 6.544 9 N -0.719 5.719 10 C 0.094 3.906 11 C 0.143 3.857 12 N -0.597 5.597 13 C 0.161 3.839 14 C -0.259 4.259 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.907 5.907 18 Si 0.907 3.093 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.020 4.020 23 C -0.218 4.218 24 H 0.101 0.899 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.395 0.605 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.033 0.967 35 H 0.042 0.958 36 H -0.001 1.001 37 H 0.253 0.747 38 H 0.139 0.861 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.997 -18.733 1.992 25.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.101 3.899 4 C -0.178 4.178 5 C -0.065 4.065 6 C -0.170 4.170 7 C 0.341 3.659 8 O -0.423 6.423 9 N -0.370 5.370 10 C -0.031 4.031 11 C 0.015 3.985 12 N -0.320 5.320 13 C 0.016 3.984 14 C -0.388 4.388 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.551 5.551 18 Si 0.737 3.263 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.204 1.204 22 C -0.039 4.039 23 C -0.237 4.237 24 H 0.119 0.881 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.155 0.845 28 H 0.154 0.846 29 H 0.230 0.770 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.063 0.937 38 H 0.157 0.843 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.178 -18.028 2.024 24.984 hybrid contribution 0.132 0.413 -0.770 0.884 sum -17.046 -17.616 1.253 24.545 Atomic orbital electron populations 1.23115 0.78051 1.04142 1.01680 1.86036 1.21715 1.26976 1.88078 1.19294 0.92455 0.84173 0.94014 1.20352 0.91274 0.98713 1.07439 1.21171 0.99944 0.90849 0.94528 1.19993 0.94370 0.93288 1.09396 1.18151 0.82465 0.88467 0.76801 1.90773 1.64806 1.36326 1.50392 1.46007 1.05945 1.10649 1.74397 1.22453 0.95678 0.82814 1.02184 1.20845 0.88915 0.89147 0.99626 1.43786 1.67895 1.16690 1.03647 1.20845 0.96741 0.96672 0.84139 1.19201 1.12981 1.18863 0.87795 0.91299 1.25038 0.95800 1.01004 0.97698 1.70071 1.17844 1.36094 1.31128 0.86223 0.76860 0.80872 0.82391 1.21402 1.21721 1.20427 1.21079 0.93337 0.97659 0.91851 1.21216 1.00322 0.91968 1.10189 0.88075 0.92371 0.92367 0.84520 0.84636 0.77016 0.91423 0.92110 0.94054 0.92905 0.94842 0.93928 0.98236 0.93687 0.84311 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.79 10.48 -18.84 -0.20 -2.99 16 3 C 0.15 1.43 6.70 -39.02 -0.26 1.17 16 4 C -0.16 -1.51 9.97 -39.50 -0.39 -1.90 16 5 C -0.05 -0.46 9.53 -39.22 -0.37 -0.84 16 6 C -0.17 -2.11 5.87 -104.96 -0.62 -2.73 16 7 C 0.55 8.87 7.76 -12.44 -0.10 8.77 16 8 O -0.54 -10.84 16.34 5.29 0.09 -10.76 16 9 N -0.72 -10.75 5.51 -61.33 -0.34 -11.08 16 10 C 0.09 1.76 6.00 -4.04 -0.02 1.73 16 11 C 0.14 2.84 5.76 -4.04 -0.02 2.82 16 12 N -0.60 -15.05 2.92 -181.11 -0.53 -15.58 16 13 C 0.16 3.98 8.98 59.85 0.54 4.52 16 14 C -0.26 -7.15 9.65 -15.06 -0.15 -7.30 16 15 H 0.07 1.87 7.86 -52.49 -0.41 1.45 16 16 C 0.00 0.09 5.10 -17.43 -0.09 0.00 16 17 N -0.91 -26.54 10.71 55.49 0.59 -25.95 16 18 Si 0.91 22.07 29.57 -169.99 -5.03 17.04 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.02 -0.24 9.58 -39.22 -0.38 -0.61 16 23 C -0.22 -2.07 9.01 -39.50 -0.36 -2.43 16 24 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 26 H 0.06 0.25 7.65 -51.93 -0.40 -0.14 16 27 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.14 1.05 6.40 -52.48 -0.34 0.71 16 29 H 0.40 4.58 6.49 -40.82 -0.27 4.32 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.03 0.88 7.34 -51.93 -0.38 0.50 16 35 H 0.04 1.13 7.34 -51.93 -0.38 0.75 16 36 H 0.00 -0.02 8.03 -51.93 -0.42 -0.44 16 37 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 38 H 0.14 1.62 7.64 -52.49 -0.40 1.22 16 39 H 0.13 0.93 6.28 -52.49 -0.33 0.60 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -33.62 330.17 -7.04 -40.67 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.38 Total: -0.65 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.23 Total: 4.32 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.27 Total: -52.61 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.11 Total: -13.74 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.62 -7.04 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317467955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.999 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds