Wall clock time and date at job start Tue Mar 31 2020 01:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35712 * 117.00501 * 2 1 4 4 C 1.38994 * 119.91429 * 180.02562 * 3 2 1 5 5 C 1.37705 * 120.08833 * 180.30014 * 4 3 2 6 6 C 1.39728 * 119.90880 * 359.45372 * 5 4 3 7 7 C 1.47603 * 120.08631 * 180.27675 * 6 5 4 8 8 O 1.21588 * 120.00026 * 180.26813 * 7 6 5 9 9 N 1.34778 * 120.00183 * 0.26762 * 7 6 5 10 10 C 1.46500 * 119.99823 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46653 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47035 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99718 * 90.00092 * 12 11 10 14 14 C 1.36931 * 120.00090 * 270.00018 * 12 11 10 15 15 H 1.07998 * 120.00251 * 23.04678 * 14 12 11 16 16 C 1.38813 * 119.99980 * 203.04612 * 14 12 11 17 17 N 1.31618 * 120.00242 * 12.92705 * 16 14 12 18 18 Si 1.86805 * 120.00027 * 192.92926 * 16 14 12 19 19 H 1.48499 * 109.47162 * 89.99768 * 18 16 14 20 20 H 1.48496 * 109.47157 * 210.00187 * 18 16 14 21 21 H 1.48503 * 109.47174 * 329.99851 * 18 16 14 22 22 C 1.39736 * 119.82872 * 0.54436 * 6 5 4 23 23 C 1.37706 * 119.90560 * 359.73028 * 22 6 5 24 24 H 1.08998 * 109.47756 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47117 * 299.99843 * 1 2 3 26 26 H 1.09003 * 109.47022 * 59.99068 * 1 2 3 27 27 H 1.08000 * 119.95625 * 0.02562 * 4 3 2 28 28 H 1.08004 * 120.04026 * 179.69686 * 5 4 3 29 29 H 0.96993 * 119.99697 * 0.02562 * 9 7 6 30 30 H 1.08994 * 109.47513 * 299.99973 * 10 9 7 31 31 H 1.08996 * 109.47469 * 60.00361 * 10 9 7 32 32 H 1.09003 * 109.47018 * 299.99997 * 11 10 9 33 33 H 1.09002 * 109.47244 * 59.99806 * 11 10 9 34 34 H 1.08997 * 109.47265 * 95.12415 * 13 12 11 35 35 H 1.09007 * 109.46423 * 215.12244 * 13 12 11 36 36 H 1.09000 * 109.47294 * 335.11760 * 13 12 11 37 37 H 0.96998 * 120.00113 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.05051 * 179.71078 * 22 6 5 39 39 H 1.07999 * 119.95073 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0452 1.2091 0.0000 4 6 3.4333 1.2797 -0.0005 5 6 4.0623 2.5047 0.0057 6 6 3.3031 3.6777 0.0010 7 6 3.9733 4.9928 0.0015 8 8 3.3112 6.0126 0.0024 9 7 5.3193 5.0633 0.0010 10 6 5.9844 6.3687 0.0021 11 6 7.5012 6.1681 0.0019 12 7 8.1663 7.4734 0.0023 13 6 8.4990 8.1255 1.2713 14 6 8.4771 8.0838 -1.1833 15 1 7.9350 7.8269 -2.0814 16 6 9.4889 9.0329 -1.2310 17 7 10.3149 9.1660 -0.2149 18 14 9.6784 10.1214 -2.7373 19 1 8.8696 11.3544 -2.5619 20 1 11.1076 10.4868 -2.9074 21 1 9.2085 9.3881 -3.9402 22 6 1.9078 3.6026 0.0016 23 6 1.2864 2.3737 0.0011 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 4.0194 0.3726 -0.0014 28 1 5.1410 2.5586 0.0102 29 1 5.8475 4.2498 0.0000 30 1 5.6912 6.9266 -0.8871 31 1 5.6919 6.9248 0.8927 32 1 7.7940 5.6103 0.8914 33 1 7.7940 5.6117 -0.8886 34 1 9.5295 7.8933 1.5399 35 1 8.3852 9.2045 1.1661 36 1 7.8297 7.7640 2.0521 37 1 11.0221 9.8290 -0.2484 38 1 1.3175 4.5070 0.0027 39 1 0.2080 2.3148 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317467955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:22 Heat of formation + Delta-G solvation = -45.368078 kcal Electronic energy + Delta-G solvation = -20552.639156 eV Core-core repulsion = 17267.627595 eV Total energy + Delta-G solvation = -3285.011560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.45842 -40.44899 -38.17245 -37.74093 -35.79182 -33.37614 -32.18709 -31.66278 -29.54450 -28.25625 -27.91047 -25.49383 -23.91443 -23.51398 -22.38423 -21.42192 -19.43297 -18.83127 -18.42932 -17.50219 -16.94355 -16.73063 -16.47407 -16.39401 -15.96609 -15.48430 -15.23019 -15.00629 -14.64645 -14.46759 -14.32940 -14.18026 -13.60053 -13.51942 -13.05725 -12.83986 -12.81044 -12.65330 -12.48573 -12.18324 -12.03977 -11.96650 -11.82564 -11.79024 -11.11347 -10.66501 -10.15962 -10.11183 -9.28586 -8.84313 -7.85152 -5.35637 -0.14152 0.30453 1.45969 1.48387 1.56346 1.82464 2.13054 2.28187 2.52473 2.82589 3.28701 3.67133 3.73534 3.82744 3.88038 4.17352 4.22695 4.26223 4.33969 4.40832 4.44714 4.54082 4.66254 4.76089 4.81632 4.97488 5.04875 5.08314 5.14136 5.23174 5.30668 5.33257 5.46664 5.59134 5.62258 5.69620 6.30775 6.32709 6.56446 7.12379 7.22160 7.82832 8.25693 9.18029 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040245 B = 0.002764 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.563966 B =10129.473042 C =10227.523922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.325 6.325 3 C 0.149 3.851 4 C -0.163 4.163 5 C -0.038 4.038 6 C -0.190 4.190 7 C 0.553 3.447 8 O -0.592 6.592 9 N -0.706 5.706 10 C 0.115 3.885 11 C 0.147 3.853 12 N -0.617 5.617 13 C 0.173 3.827 14 C -0.267 4.267 15 H 0.070 0.930 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.968 3.032 19 H -0.289 1.289 20 H -0.292 1.292 21 H -0.268 1.268 22 C -0.032 4.032 23 C -0.215 4.215 24 H 0.122 0.878 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.158 0.842 28 H 0.158 0.842 29 H 0.414 0.586 30 H 0.039 0.961 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.013 0.987 35 H 0.013 0.987 36 H 0.031 0.969 37 H 0.249 0.751 38 H 0.129 0.871 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.975 -21.237 1.609 27.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.102 3.898 4 C -0.181 4.181 5 C -0.057 4.057 6 C -0.194 4.194 7 C 0.343 3.657 8 O -0.475 6.475 9 N -0.359 5.359 10 C -0.012 4.012 11 C 0.020 3.980 12 N -0.340 5.340 13 C 0.028 3.972 14 C -0.397 4.397 15 H 0.088 0.912 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.797 3.203 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.192 1.192 22 C -0.051 4.051 23 C -0.234 4.234 24 H 0.140 0.860 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.176 0.824 28 H 0.176 0.824 29 H 0.252 0.748 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.032 0.968 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.147 0.853 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.172 -20.605 1.636 27.522 hybrid contribution 0.295 1.023 -0.623 1.234 sum -17.876 -19.582 1.013 26.534 Atomic orbital electron populations 1.23435 0.76103 1.05939 1.02555 1.86039 1.23765 1.26372 1.87597 1.19502 0.92872 0.84601 0.92779 1.20640 0.91567 0.99176 1.06716 1.21356 1.00941 0.90046 0.93309 1.19781 0.94834 0.92168 1.12583 1.18691 0.82311 0.89303 0.75416 1.90743 1.65759 1.38292 1.52689 1.45747 1.05960 1.10055 1.74102 1.21904 0.95018 0.84133 1.00118 1.20961 0.88707 0.87143 1.01218 1.44030 1.68330 1.18650 1.02984 1.20608 0.96342 0.95111 0.85120 1.19496 1.12483 1.18987 0.88691 0.91227 1.25794 0.95932 1.02488 1.00464 1.70217 1.18426 1.36713 1.32879 0.85250 0.76453 0.78956 0.79683 1.21607 1.21800 1.19248 1.21121 0.93137 0.98310 0.92500 1.21390 1.01605 0.91011 1.09364 0.85983 0.91446 0.91505 0.82397 0.82406 0.74777 0.94227 0.93663 0.91457 0.92077 0.96912 0.96820 0.95017 0.94136 0.85312 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -4.79 10.48 -90.33 -0.95 -5.74 16 3 C 0.15 2.52 6.70 22.63 0.15 2.68 16 4 C -0.16 -2.61 9.97 22.32 0.22 -2.39 16 5 C -0.04 -0.67 9.53 22.50 0.21 -0.46 16 6 C -0.19 -4.64 5.87 -20.08 -0.12 -4.75 16 7 C 0.55 17.65 7.76 86.72 0.67 18.32 16 8 O -0.59 -24.29 16.34 -3.99 -0.07 -24.35 16 9 N -0.71 -20.39 5.51 -466.21 -2.57 -22.95 16 10 C 0.12 4.25 6.00 86.38 0.52 4.77 16 11 C 0.15 5.62 5.76 86.38 0.50 6.12 16 12 N -0.62 -30.97 2.92 -726.92 -2.12 -33.09 16 13 C 0.17 8.64 8.98 127.77 1.15 9.78 16 14 C -0.27 -14.74 9.65 84.03 0.81 -13.93 16 15 H 0.07 3.76 7.86 -2.91 -0.02 3.74 16 16 C -0.05 -2.91 5.10 84.86 0.43 -2.48 16 17 N -0.94 -55.63 10.71 21.65 0.23 -55.40 16 18 Si 0.97 45.68 29.57 68.60 2.03 47.71 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 C -0.03 -0.71 9.58 22.51 0.22 -0.50 16 23 C -0.22 -3.67 9.01 22.33 0.20 -3.47 16 24 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.07 0.38 7.65 -2.38 -0.02 0.36 16 26 H 0.07 0.38 7.65 -2.39 -0.02 0.36 16 27 H 0.16 1.84 8.06 -2.91 -0.02 1.82 16 28 H 0.16 1.94 6.40 -2.91 -0.02 1.92 16 29 H 0.41 8.66 6.49 -92.71 -0.60 8.06 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 33 H 0.06 2.25 8.04 -2.39 -0.02 2.23 16 34 H 0.01 0.68 7.34 -2.39 -0.02 0.66 16 35 H 0.01 0.72 7.34 -2.38 -0.02 0.70 16 36 H 0.03 1.34 8.03 -2.39 -0.02 1.32 16 37 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.13 3.09 7.64 -2.91 -0.02 3.07 16 39 H 0.16 1.80 6.28 -2.91 -0.02 1.78 16 Total: -1.00 -73.56 330.17 3.09 -70.47 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.46 Total: 8.46 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: 6.08 Total: 14.90 kcal Atomic # 7 Polarization: -106.98 SS G_CDS: -4.46 Total: -111.44 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -1.01 Total: -30.09 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.56 3.09 -70.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317467955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.097 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds