Wall clock time and date at job start Tue Mar 31 2020 00:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47216 * 2 1 4 4 C 1.46499 * 119.99781 * 274.96529 * 3 2 1 5 5 C 1.52999 * 109.47172 * 270.00035 * 4 3 2 6 6 N 1.46509 * 109.47158 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00287 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99930 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47393 * 89.99766 * 11 9 7 13 13 H 1.48504 * 109.47266 * 210.00061 * 11 9 7 14 14 H 1.48504 * 109.47108 * 329.99636 * 11 9 7 15 15 C 1.34775 * 120.00222 * 94.96673 * 3 2 1 16 16 O 1.21583 * 119.99935 * 185.55682 * 15 3 2 17 17 C 1.47539 * 119.99775 * 5.55656 * 15 3 2 18 18 C 1.39708 * 120.18911 * 55.03464 * 17 15 3 19 19 C 1.37786 * 119.90714 * 179.97438 * 18 17 15 20 20 C 1.38547 * 120.29990 * 359.97438 * 19 18 17 21 21 C 1.38057 * 120.39370 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.08093 * 0.02562 * 21 20 19 23 23 O 1.35652 * 120.15011 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47341 * 300.00129 * 1 2 3 26 26 H 1.09005 * 109.46629 * 59.99959 * 1 2 3 27 27 H 1.09000 * 109.47341 * 239.99871 * 2 1 3 28 28 H 1.09001 * 109.47451 * 119.99708 * 2 1 3 29 29 H 1.09003 * 109.47586 * 30.00138 * 4 3 2 30 30 H 1.09004 * 109.47213 * 150.00372 * 4 3 2 31 31 H 1.08999 * 109.47164 * 300.00026 * 5 4 3 32 32 H 1.08997 * 109.47609 * 60.00129 * 5 4 3 33 33 H 0.96996 * 119.99634 * 359.97438 * 6 5 4 34 34 H 0.97004 * 120.00436 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.05251 * 0.25080 * 18 17 15 36 36 H 1.08000 * 119.85317 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.80851 * 179.97438 * 20 19 18 38 38 H 1.07991 * 119.96315 * 180.02562 * 21 20 19 39 39 H 0.96703 * 113.99631 * 90.00615 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.1084 -1.2640 5 6 3.5628 1.8825 -1.8289 6 7 3.7036 2.6102 -3.0926 7 6 4.8831 2.5558 -3.7862 8 1 5.7097 1.9769 -3.4015 9 6 5.0163 3.2449 -4.9838 10 7 4.0089 3.9500 -5.4530 11 14 6.6255 3.1714 -5.9296 12 1 6.5908 2.0289 -6.8776 13 1 6.8139 4.4360 -6.6851 14 1 7.7512 2.9910 -4.9780 15 6 2.3382 1.9829 1.1628 16 8 2.6465 3.1590 1.1740 17 6 2.3143 1.2145 2.4220 18 6 3.0557 0.0362 2.5401 19 6 3.0295 -0.6766 3.7190 20 6 2.2714 -0.2301 4.7892 21 6 1.5349 0.9331 4.6864 22 6 1.5496 1.6633 3.5071 23 8 0.8269 2.8068 3.4047 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.4180 1.7456 -1.9764 30 1 2.0045 3.1733 -1.0897 31 1 4.3038 2.2453 -1.1166 32 1 3.7174 0.8177 -2.0032 33 1 2.9611 3.1298 -3.4383 34 1 4.1018 4.4313 -6.2901 35 1 3.6520 -0.3131 1.7102 36 1 3.6026 -1.5876 3.8092 37 1 2.2563 -0.7953 5.7094 38 1 0.9467 1.2750 5.5250 39 1 1.3089 3.6018 3.6706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320683889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:37 Heat of formation + Delta-G solvation = -33.093843 kcal Electronic energy + Delta-G solvation = -21499.439139 eV Core-core repulsion = 18214.959830 eV Total energy + Delta-G solvation = -3284.479309 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.67638 -38.81468 -36.93326 -36.07378 -34.56166 -32.03872 -31.24875 -30.28304 -30.03314 -27.57407 -24.45919 -23.76841 -22.77820 -22.74367 -21.43534 -19.51286 -18.34879 -17.46875 -17.11248 -16.20378 -16.08538 -15.90918 -15.13570 -14.67946 -14.36120 -14.22259 -13.85633 -13.66651 -13.55655 -13.15826 -12.90554 -12.76235 -12.55717 -12.39202 -11.96085 -11.85342 -11.25049 -11.13270 -10.97248 -10.88148 -10.86349 -10.65613 -10.09597 -9.81614 -9.67359 -9.19584 -8.93198 -8.85284 -8.47683 -6.91204 -5.73896 -3.03247 0.72786 0.96309 2.73912 3.03558 3.38667 3.45774 3.50777 3.52991 3.99224 4.36818 4.60232 4.63304 4.68824 4.91577 4.99519 5.11619 5.19834 5.33855 5.43165 5.53370 5.58189 5.66368 5.70503 5.75137 5.85780 5.95419 6.03289 6.06329 6.11163 6.15743 6.19049 6.44037 6.59193 6.76438 6.92686 7.45313 7.51618 7.72049 8.26579 8.44504 9.55377 10.11631 10.46905 11.49021 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.003634 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.263930 B = 7702.302888 C = 7784.829890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 N -0.599 5.599 4 C 0.107 3.893 5 C 0.144 3.856 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.565 3.435 16 O -0.527 6.527 17 C -0.146 4.146 18 C -0.075 4.075 19 C -0.134 4.134 20 C -0.089 4.089 21 C -0.151 4.151 22 C 0.152 3.848 23 O -0.493 6.493 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.279 -11.496 21.263 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.029 4.029 3 N -0.331 5.331 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C 0.352 3.648 16 O -0.404 6.404 17 C -0.150 4.150 18 C -0.094 4.094 19 C -0.152 4.152 20 C -0.107 4.107 21 C -0.170 4.170 22 C 0.106 3.894 23 O -0.304 6.304 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -7.389 -11.249 20.995 24.938 hybrid contribution 0.952 0.405 -0.576 1.184 sum -6.437 -10.844 20.419 23.999 Atomic orbital electron populations 1.22161 0.95792 1.02061 1.02671 1.21811 0.94732 0.82646 1.03695 1.47818 1.64503 1.14424 1.06394 1.21717 0.98735 0.97988 0.83042 1.20905 0.93312 0.95291 0.89004 1.42209 1.15343 1.58646 1.21283 1.19204 0.91336 1.24926 1.01493 0.91204 1.24748 0.97833 1.00134 0.98251 1.69662 1.30532 1.35914 1.22065 0.86162 0.83078 0.76943 0.79846 1.21705 1.21712 1.20749 1.18071 0.76999 0.86563 0.83144 1.90803 1.47639 1.15456 1.86480 1.20425 1.01017 0.97928 0.95601 1.21230 0.97227 0.92486 0.98409 1.21110 1.00397 1.00660 0.92998 1.21173 0.95332 0.95378 0.98821 1.21397 1.01451 0.97036 0.97111 1.18408 0.90877 0.88779 0.91376 1.84679 1.40487 1.15720 1.89533 0.91605 0.92529 0.92036 0.89907 0.89755 0.90366 0.89542 0.96089 0.96398 0.78224 0.93476 0.84721 0.85109 0.85276 0.84896 0.74191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.24 37.16 0.38 -1.40 16 2 C 0.09 1.09 5.95 -4.04 -0.02 1.06 16 3 N -0.60 -9.18 2.47 -174.91 -0.43 -9.62 16 4 C 0.11 1.95 5.59 -4.04 -0.02 1.92 16 5 C 0.14 3.10 6.58 -4.04 -0.03 3.08 16 6 N -0.73 -19.42 5.60 -59.91 -0.34 -19.76 16 7 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 10 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 11 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.57 9.31 6.78 -12.47 -0.08 9.23 16 16 O -0.53 -10.68 16.34 3.04 0.05 -10.63 16 17 C -0.15 -1.89 4.91 -104.84 -0.51 -2.41 16 18 C -0.07 -0.77 7.47 -39.20 -0.29 -1.06 16 19 C -0.13 -1.06 10.02 -39.63 -0.40 -1.46 16 20 C -0.09 -0.66 10.03 -39.53 -0.40 -1.06 16 21 C -0.15 -1.35 9.98 -39.47 -0.39 -1.75 16 22 C 0.15 1.78 6.71 -38.69 -0.26 1.52 16 23 O -0.49 -6.00 12.73 -20.91 -0.27 -6.27 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 0.92 8.11 -51.93 -0.42 0.50 16 28 H 0.08 0.84 4.42 -51.93 -0.23 0.61 16 29 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.09 1.74 7.35 -51.93 -0.38 1.36 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.13 1.29 7.59 -52.49 -0.40 0.89 16 36 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 38 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 39 H 0.40 3.61 9.06 45.56 0.41 4.02 16 LS Contribution 334.12 15.07 5.04 5.04 Total: -1.00 -35.44 334.12 -7.21 -42.65 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -4.68 Total: 8.78 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.28 Total: 0.10 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.04 Total: -57.52 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.22 Total: -16.90 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.44 -7.21 -42.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320683889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.553 kcal (2) G-P(sol) polarization free energy of solvation -35.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds