Wall clock time and date at job start Tue Mar 31 2020 00:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47216 * 2 1 4 4 C 1.46499 * 119.99781 * 274.96529 * 3 2 1 5 5 C 1.52999 * 109.47172 * 270.00035 * 4 3 2 6 6 N 1.46509 * 109.47158 * 180.02562 * 5 4 3 7 7 C 1.36936 * 119.99788 * 180.02562 * 6 5 4 8 8 H 1.07999 * 120.00559 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99576 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00287 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99930 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47393 * 89.99766 * 11 9 7 13 13 H 1.48504 * 109.47266 * 210.00061 * 11 9 7 14 14 H 1.48504 * 109.47108 * 329.99636 * 11 9 7 15 15 C 1.34775 * 120.00222 * 94.96673 * 3 2 1 16 16 O 1.21583 * 119.99935 * 185.55682 * 15 3 2 17 17 C 1.47539 * 119.99775 * 5.55656 * 15 3 2 18 18 C 1.39708 * 120.18911 * 55.03464 * 17 15 3 19 19 C 1.37786 * 119.90714 * 179.97438 * 18 17 15 20 20 C 1.38547 * 120.29990 * 359.97438 * 19 18 17 21 21 C 1.38057 * 120.39370 * 359.97438 * 20 19 18 22 22 C 1.38711 * 120.08093 * 0.02562 * 21 20 19 23 23 O 1.35652 * 120.15011 * 180.02562 * 22 21 20 24 24 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47341 * 300.00129 * 1 2 3 26 26 H 1.09005 * 109.46629 * 59.99959 * 1 2 3 27 27 H 1.09000 * 109.47341 * 239.99871 * 2 1 3 28 28 H 1.09001 * 109.47451 * 119.99708 * 2 1 3 29 29 H 1.09003 * 109.47586 * 30.00138 * 4 3 2 30 30 H 1.09004 * 109.47213 * 150.00372 * 4 3 2 31 31 H 1.08999 * 109.47164 * 300.00026 * 5 4 3 32 32 H 1.08997 * 109.47609 * 60.00129 * 5 4 3 33 33 H 0.96996 * 119.99634 * 359.97438 * 6 5 4 34 34 H 0.97004 * 120.00436 * 180.02562 * 10 9 7 35 35 H 1.08000 * 120.05251 * 0.25080 * 18 17 15 36 36 H 1.08000 * 119.85317 * 179.97438 * 19 18 17 37 37 H 1.08007 * 119.80851 * 179.97438 * 20 19 18 38 38 H 1.07991 * 119.96315 * 180.02562 * 21 20 19 39 39 H 0.96703 * 113.99631 * 90.00615 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1590 2.1084 -1.2640 5 6 3.5628 1.8825 -1.8289 6 7 3.7036 2.6102 -3.0926 7 6 4.8831 2.5558 -3.7862 8 1 5.7097 1.9769 -3.4015 9 6 5.0163 3.2449 -4.9838 10 7 4.0089 3.9500 -5.4530 11 14 6.6255 3.1714 -5.9296 12 1 6.5908 2.0289 -6.8776 13 1 6.8139 4.4360 -6.6851 14 1 7.7512 2.9910 -4.9780 15 6 2.3382 1.9829 1.1628 16 8 2.6465 3.1590 1.1740 17 6 2.3143 1.2145 2.4220 18 6 3.0557 0.0362 2.5401 19 6 3.0295 -0.6766 3.7190 20 6 2.2714 -0.2301 4.7892 21 6 1.5349 0.9331 4.6864 22 6 1.5496 1.6633 3.5071 23 8 0.8269 2.8068 3.4047 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.4180 1.7456 -1.9764 30 1 2.0045 3.1733 -1.0897 31 1 4.3038 2.2453 -1.1166 32 1 3.7174 0.8177 -2.0032 33 1 2.9611 3.1298 -3.4383 34 1 4.1018 4.4313 -6.2901 35 1 3.6520 -0.3131 1.7102 36 1 3.6026 -1.5876 3.8092 37 1 2.2563 -0.7953 5.7094 38 1 0.9467 1.2750 5.5250 39 1 1.3089 3.6018 3.6706 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320683889.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:35 Heat of formation + Delta-G solvation = -58.782060 kcal Electronic energy + Delta-G solvation = -21500.553064 eV Core-core repulsion = 18214.959830 eV Total energy + Delta-G solvation = -3285.593234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 3.99 seconds Orbital eigenvalues (eV) -41.70094 -39.84677 -37.81373 -37.45038 -36.37026 -33.73772 -32.30867 -31.61456 -30.83033 -29.19022 -26.04398 -24.96674 -24.07523 -23.54335 -22.95447 -20.66504 -19.30856 -19.14319 -18.45601 -17.55247 -17.09768 -16.72527 -16.58965 -15.95994 -15.75133 -15.33247 -15.14422 -15.12645 -14.91548 -14.61633 -14.50941 -13.77999 -13.32110 -13.27973 -13.06836 -12.94540 -12.84429 -12.71285 -12.62242 -12.36876 -12.14951 -12.03973 -11.88954 -11.73910 -11.00729 -10.94609 -10.03542 -9.75096 -9.66346 -9.09651 -7.99323 -5.30903 -0.06760 0.25806 1.45361 1.48516 1.56705 1.57107 1.86753 2.54148 2.61570 3.22507 3.33484 3.38347 3.89723 3.93966 4.03946 4.10696 4.13885 4.16679 4.32719 4.41692 4.44118 4.48483 4.52134 4.70062 4.80352 4.86356 4.92827 4.99323 5.04604 5.27178 5.28591 5.32491 5.41022 5.44855 5.50403 5.80723 6.21493 6.30238 6.67669 7.01706 7.27709 7.98329 8.24346 9.24146 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027791 B = 0.003634 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.263930 B = 7702.302888 C = 7784.829890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.089 3.911 3 N -0.597 5.597 4 C 0.122 3.878 5 C 0.152 3.848 6 N -0.743 5.743 7 C -0.253 4.253 8 H 0.075 0.925 9 C -0.073 4.073 10 N -0.968 5.968 11 Si 0.980 3.020 12 H -0.280 1.280 13 H -0.293 1.293 14 H -0.271 1.271 15 C 0.559 3.441 16 O -0.580 6.580 17 C -0.173 4.173 18 C -0.082 4.082 19 C -0.124 4.124 20 C -0.075 4.075 21 C -0.150 4.150 22 C 0.131 3.869 23 O -0.511 6.511 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.000 1.000 32 H 0.034 0.966 33 H 0.375 0.625 34 H 0.254 0.746 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.153 0.847 39 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -14.410 22.986 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.032 4.032 3 N -0.329 5.329 4 C -0.002 4.002 5 C 0.024 3.976 6 N -0.387 5.387 7 C -0.384 4.384 8 H 0.093 0.907 9 C -0.265 4.265 10 N -0.618 5.618 11 Si 0.808 3.192 12 H -0.207 1.207 13 H -0.220 1.220 14 H -0.196 1.196 15 C 0.348 3.652 16 O -0.461 6.461 17 C -0.176 4.176 18 C -0.100 4.100 19 C -0.142 4.142 20 C -0.093 4.093 21 C -0.168 4.168 22 C 0.085 3.915 23 O -0.324 6.324 24 H 0.113 0.887 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.018 0.982 32 H 0.052 0.948 33 H 0.207 0.793 34 H 0.063 0.937 35 H 0.156 0.844 36 H 0.182 0.818 37 H 0.185 0.815 38 H 0.171 0.829 39 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -6.882 -14.224 22.754 27.702 hybrid contribution 0.771 1.249 -0.989 1.770 sum -6.110 -12.975 21.764 26.065 Atomic orbital electron populations 1.22112 0.94864 1.03560 1.01499 1.22105 0.95458 0.80486 1.05137 1.47910 1.64145 1.15727 1.05075 1.21333 0.97009 0.97058 0.84753 1.20925 0.94813 0.95159 0.86708 1.42397 1.14557 1.59092 1.22618 1.19602 0.92206 1.24730 1.01879 0.90730 1.25654 1.01481 1.00039 0.99366 1.69825 1.32679 1.36911 1.22432 0.85056 0.78977 0.76816 0.78369 1.20687 1.21959 1.19577 1.18788 0.75619 0.86269 0.84502 1.90757 1.50005 1.17918 1.87385 1.20268 1.03841 0.99340 0.94175 1.21352 0.96924 0.91877 0.99865 1.21495 0.99836 1.01058 0.91775 1.21654 0.93285 0.94393 0.99937 1.21654 1.01607 0.97169 0.96391 1.18719 0.91483 0.89012 0.92249 1.84638 1.41306 1.16567 1.89900 0.88704 0.93769 0.93111 0.89021 0.87681 0.88829 0.92333 0.98208 0.94779 0.79288 0.93746 0.84430 0.81823 0.81502 0.82931 0.73358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.24 71.98 0.74 -2.49 16 2 C 0.09 1.96 5.95 86.38 0.51 2.48 16 3 N -0.60 -18.69 2.47 -825.57 -2.04 -20.73 16 4 C 0.12 4.59 5.59 86.38 0.48 5.07 16 5 C 0.15 6.72 6.58 86.38 0.57 7.29 16 6 N -0.74 -40.55 5.60 -343.44 -1.92 -42.48 16 7 C -0.25 -14.84 9.99 84.03 0.84 -14.00 16 8 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 9 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 10 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 11 Si 0.98 47.19 29.55 68.60 2.03 49.22 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.56 19.17 6.78 86.70 0.59 19.76 16 16 O -0.58 -25.15 16.34 -1.82 -0.03 -25.18 16 17 C -0.17 -4.44 4.91 -20.01 -0.10 -4.53 16 18 C -0.08 -1.53 7.47 22.52 0.17 -1.36 16 19 C -0.12 -1.48 10.02 22.24 0.22 -1.26 16 20 C -0.07 -0.80 10.03 22.30 0.22 -0.57 16 21 C -0.15 -2.29 9.98 22.34 0.22 -2.07 16 22 C 0.13 3.02 6.71 22.84 0.15 3.18 16 23 O -0.51 -12.92 12.73 -87.52 -1.11 -14.04 16 24 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.09 1.86 8.11 -2.39 -0.02 1.84 16 28 H 0.11 1.89 4.42 -2.39 -0.01 1.88 16 29 H 0.09 3.20 8.07 -2.39 -0.02 3.18 16 30 H 0.06 2.53 7.35 -2.38 -0.02 2.51 16 31 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.38 21.49 7.67 -92.71 -0.71 20.78 16 34 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.14 2.40 7.59 -2.91 -0.02 2.38 16 36 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 37 H 0.17 0.58 8.06 -2.91 -0.02 0.55 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.41 8.04 9.06 -74.06 -0.67 7.37 16 Total: -1.00 -79.10 334.12 1.98 -77.12 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.31 Total: 29.11 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.09 Total: 7.63 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -3.68 Total: -123.87 kcal Atomic # 8 Polarization: -38.07 SS G_CDS: -1.14 Total: -39.22 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -79.10 1.98 -77.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320683889.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.338 kcal (2) G-P(sol) polarization free energy of solvation -79.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.99 seconds