Wall clock time and date at job start Tue Mar 31 2020 00:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46868 * 2 1 4 4 C 1.46506 * 120.00055 * 270.00104 * 3 2 1 5 5 C 1.50697 * 109.46876 * 269.99991 * 4 3 2 6 6 H 1.08006 * 120.00477 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99886 * 180.02562 * 5 4 3 8 8 N 1.31504 * 119.99953 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47212 * 60.00153 * 9 7 5 11 11 H 1.48503 * 109.46599 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47266 * 299.99667 * 9 7 5 13 13 C 1.34775 * 119.99925 * 90.00185 * 3 2 1 14 14 O 1.21280 * 119.99930 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99971 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.47205 * 180.02562 * 15 13 3 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47171 * 180.02562 * 17 16 15 19 19 C 1.38650 * 120.78792 * 269.71759 * 18 17 16 20 20 C 1.38207 * 119.16129 * 179.79528 * 19 18 17 21 21 N 1.31868 * 120.76474 * 0.49389 * 20 19 18 22 22 C 1.31874 * 121.72157 * 359.73831 * 21 20 19 23 23 C 1.38199 * 120.77057 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47010 * 59.99875 * 1 2 3 25 25 H 1.09003 * 109.46553 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47405 * 299.99866 * 1 2 3 27 27 H 1.09000 * 109.47405 * 240.00134 * 2 1 3 28 28 H 1.09000 * 109.47010 * 120.00125 * 2 1 3 29 29 H 1.08997 * 109.47087 * 30.00200 * 4 3 2 30 30 H 1.08998 * 109.46674 * 150.00089 * 4 3 2 31 31 H 0.97004 * 120.00013 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47017 * 60.00358 * 15 13 3 33 33 H 1.08999 * 109.47472 * 300.00035 * 15 13 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 35 35 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 36 36 H 1.07998 * 120.42060 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.61581 * 180.20726 * 20 19 18 38 38 H 1.07998 * 119.61429 * 180.02562 * 22 21 20 39 39 H 1.07991 * 120.42226 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6170 9 14 5.9138 2.0977 -3.4163 10 1 6.1417 0.6411 -3.5942 11 1 6.1612 2.7977 -4.7024 12 1 6.8409 2.6211 -2.3810 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3003 2.1819 3.5585 17 6 2.0945 1.6029 4.8485 18 6 2.4490 2.6089 5.9131 19 6 3.7376 2.6819 6.4197 20 6 4.0267 3.6202 7.3923 21 7 3.0918 4.4327 7.8449 22 6 1.8550 4.3884 7.3897 23 6 1.4930 3.4796 6.4135 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5816 1.6878 -2.0284 30 1 2.0954 3.1411 -1.1383 31 1 3.6757 3.5180 -4.4430 32 1 2.6212 0.4186 2.5302 33 1 0.9432 1.0125 2.5299 34 1 1.0485 1.3152 4.9550 35 1 2.7266 0.7214 4.9562 36 1 4.5066 2.0165 6.0561 37 1 5.0288 3.6857 7.7896 38 1 1.1163 5.0703 7.7843 39 1 0.4783 3.4480 6.0450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322952195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:56 Heat of formation + Delta-G solvation = -43.014241 kcal Electronic energy + Delta-G solvation = -20937.055334 eV Core-core repulsion = 17652.145844 eV Total energy + Delta-G solvation = -3284.909490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32744 -39.24876 -37.45719 -35.27813 -33.35461 -32.79745 -31.37397 -30.16252 -28.91887 -27.05023 -25.81015 -23.63499 -23.07189 -22.47877 -22.16933 -18.60149 -17.30524 -16.82351 -16.69766 -16.43751 -16.11553 -15.73410 -15.65248 -15.17043 -14.36160 -14.17948 -13.88737 -13.81185 -13.60650 -13.36810 -12.88585 -12.59108 -12.06129 -12.03842 -11.88234 -11.65504 -11.51380 -11.19867 -10.94725 -10.79031 -10.54482 -10.14041 -9.93100 -9.75834 -9.66095 -9.65447 -9.30490 -8.87516 -8.43692 -7.70821 -6.04763 -4.09675 0.97133 0.98244 3.22702 3.31590 3.34891 3.36559 3.41488 3.73594 4.17766 4.30704 4.44215 4.51154 4.63378 4.86940 4.95039 5.01894 5.09901 5.13209 5.19361 5.29082 5.29897 5.38171 5.44653 5.57884 5.61299 5.71848 5.78145 5.95660 6.13819 6.17755 6.42235 6.51527 6.87809 7.12460 7.42920 7.52288 7.79070 7.91511 8.22301 8.36415 8.88909 9.06522 9.55366 11.03365 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.003645 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.964337 B = 7679.060836 C = 8512.821210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.529 4.529 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.899 3.101 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.505 3.495 14 O -0.519 6.519 15 C 0.044 3.956 16 O -0.354 6.354 17 C 0.097 3.903 18 C -0.041 4.041 19 C -0.150 4.150 20 C 0.095 3.905 21 N -0.484 5.484 22 C 0.094 3.906 23 C -0.151 4.151 24 H 0.062 0.938 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.264 0.736 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.137 0.863 37 H 0.157 0.843 38 H 0.157 0.843 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.841 -7.633 18.258 20.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.020 4.020 3 N -0.330 5.330 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.290 3.710 14 O -0.395 6.395 15 C -0.036 4.036 16 O -0.272 6.272 17 C 0.021 3.979 18 C -0.049 4.049 19 C -0.170 4.170 20 C -0.062 4.062 21 N -0.194 5.194 22 C -0.062 4.062 23 C -0.171 4.171 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.174 0.826 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.348 -6.099 18.673 20.359 hybrid contribution 0.626 -1.158 -1.104 1.718 sum -4.722 -7.257 17.569 19.586 Atomic orbital electron populations 1.22240 0.96723 1.01471 1.02428 1.21449 0.93572 0.84189 1.02761 1.48222 1.64193 1.13289 1.07344 1.19281 0.96319 0.93680 0.77755 1.21402 0.96933 1.32083 1.06334 0.92499 1.24933 0.97884 0.94864 0.96377 1.69917 1.35777 1.33276 1.14380 0.86553 0.84777 0.78219 0.77843 1.20250 1.21146 1.20148 1.19870 0.79459 0.87165 0.84467 1.90710 1.44253 1.17699 1.86788 1.22440 1.00649 0.93320 0.87177 1.88122 1.88308 1.38740 1.11988 1.21342 1.00421 0.93760 0.82414 1.20002 0.93871 0.96133 0.94943 1.22115 0.96612 1.00357 0.97925 1.22766 0.98706 0.90998 0.93704 1.67660 1.01695 1.23180 1.26841 1.22759 0.93327 0.96458 0.93694 1.22094 1.00898 0.96062 0.98007 0.91847 0.92072 0.93154 0.89664 0.91934 0.94826 0.93849 0.92629 0.90755 0.90832 0.91919 0.91870 0.84518 0.82564 0.82590 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.10 1.59 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -12.49 2.46 -175.06 -0.43 -12.92 16 4 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 5 C -0.53 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 C 0.51 10.79 7.75 -10.99 -0.09 10.70 16 14 O -0.52 -13.92 16.08 -14.35 -0.23 -14.15 16 15 C 0.04 0.66 4.97 36.00 0.18 0.84 16 16 O -0.35 -5.74 9.86 -55.14 -0.54 -6.29 16 17 C 0.10 1.08 6.11 36.01 0.22 1.30 16 18 C -0.04 -0.48 5.55 -104.32 -0.58 -1.06 16 19 C -0.15 -1.65 9.82 -39.44 -0.39 -2.03 16 20 C 0.09 1.03 11.18 -17.55 -0.20 0.84 16 21 N -0.48 -5.92 10.36 -13.25 -0.14 -6.06 16 22 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 23 C -0.15 -1.62 9.82 -39.44 -0.39 -2.00 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 27 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 29 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.07 0.93 7.40 -51.93 -0.38 0.55 16 33 H 0.07 0.88 7.18 -51.93 -0.37 0.51 16 34 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 35 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.16 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 338.10 15.07 5.10 5.10 Total: -1.00 -36.23 338.10 -7.67 -43.89 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.61 Total: -2.53 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.52 Total: 1.98 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.17 Total: -44.92 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -0.77 Total: -20.44 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.23 -7.67 -43.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322952195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.880 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds