Wall clock time and date at job start Tue Mar 31 2020 00:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46499 * 109.46868 * 2 1 4 4 C 1.46506 * 120.00055 * 270.00104 * 3 2 1 5 5 C 1.50697 * 109.46876 * 269.99991 * 4 3 2 6 6 H 1.08006 * 120.00477 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99886 * 180.02562 * 5 4 3 8 8 N 1.31504 * 119.99953 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99709 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47212 * 60.00153 * 9 7 5 11 11 H 1.48503 * 109.46599 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47266 * 299.99667 * 9 7 5 13 13 C 1.34775 * 119.99925 * 90.00185 * 3 2 1 14 14 O 1.21280 * 119.99930 * 180.02562 * 13 3 2 15 15 C 1.50697 * 119.99971 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.47205 * 180.02562 * 15 13 3 17 17 C 1.42898 * 114.00186 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47171 * 180.02562 * 17 16 15 19 19 C 1.38650 * 120.78792 * 269.71759 * 18 17 16 20 20 C 1.38207 * 119.16129 * 179.79528 * 19 18 17 21 21 N 1.31868 * 120.76474 * 0.49389 * 20 19 18 22 22 C 1.31874 * 121.72157 * 359.73831 * 21 20 19 23 23 C 1.38199 * 120.77057 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.47010 * 59.99875 * 1 2 3 25 25 H 1.09003 * 109.46553 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47405 * 299.99866 * 1 2 3 27 27 H 1.09000 * 109.47405 * 240.00134 * 2 1 3 28 28 H 1.09000 * 109.47010 * 120.00125 * 2 1 3 29 29 H 1.08997 * 109.47087 * 30.00200 * 4 3 2 30 30 H 1.08998 * 109.46674 * 150.00089 * 4 3 2 31 31 H 0.97004 * 120.00013 * 180.02562 * 8 7 5 32 32 H 1.09001 * 109.47017 * 60.00358 * 15 13 3 33 33 H 1.08999 * 109.47472 * 300.00035 * 15 13 3 34 34 H 1.09002 * 109.47259 * 300.00293 * 17 16 15 35 35 H 1.09001 * 109.47074 * 60.00315 * 17 16 15 36 36 H 1.07998 * 120.42060 * 0.02562 * 19 18 17 37 37 H 1.07997 * 119.61581 * 180.20726 * 20 19 18 38 38 H 1.07998 * 119.61429 * 180.02562 * 22 21 20 39 39 H 1.07991 * 120.42226 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1493 2.3906 -2.8775 8 7 3.3496 3.1275 -3.6170 9 14 5.9138 2.0977 -3.4163 10 1 6.1417 0.6411 -3.5942 11 1 6.1612 2.7977 -4.7024 12 1 6.8409 2.6211 -2.3810 13 6 2.2429 2.0165 1.1672 14 8 2.6467 3.1602 1.1672 15 6 1.9913 1.3063 2.4723 16 8 2.3003 2.1819 3.5585 17 6 2.0945 1.6029 4.8485 18 6 2.4490 2.6089 5.9131 19 6 3.7376 2.6819 6.4197 20 6 4.0267 3.6202 7.3923 21 7 3.0918 4.4327 7.8449 22 6 1.8550 4.3884 7.3897 23 6 1.4930 3.4796 6.4135 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5816 1.6878 -2.0284 30 1 2.0954 3.1411 -1.1383 31 1 3.6757 3.5180 -4.4430 32 1 2.6212 0.4186 2.5302 33 1 0.9432 1.0125 2.5299 34 1 1.0485 1.3152 4.9550 35 1 2.7266 0.7214 4.9562 36 1 4.5066 2.0165 6.0561 37 1 5.0288 3.6857 7.7896 38 1 1.1163 5.0703 7.7843 39 1 0.4783 3.4480 6.0450 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322952195.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:55 Heat of formation + Delta-G solvation = -67.409786 kcal Electronic energy + Delta-G solvation = -20938.113204 eV Core-core repulsion = 17652.145844 eV Total energy + Delta-G solvation = -3285.967360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16196 -40.76069 -38.61427 -36.94309 -34.93951 -34.18346 -32.14993 -31.66839 -30.31629 -28.48224 -27.11003 -24.76589 -24.42252 -23.99939 -22.97942 -20.14198 -18.69142 -18.37127 -17.83445 -17.66690 -17.33980 -16.87605 -16.77582 -16.51632 -16.08523 -15.52487 -14.96890 -14.74536 -14.64331 -14.56936 -14.29839 -14.01079 -13.59675 -13.32185 -13.20894 -13.06427 -12.79030 -12.63081 -12.48172 -12.43303 -12.15442 -11.88683 -11.74544 -10.82899 -10.73095 -10.65169 -10.52234 -10.47736 -10.09134 -9.47703 -8.23375 -6.38459 0.13640 0.19586 1.35823 1.40766 1.47762 1.76603 2.00391 2.38122 2.75398 3.06192 3.15226 3.56731 3.62021 3.79201 3.86044 4.02971 4.13092 4.19550 4.21960 4.28737 4.43582 4.44030 4.46796 4.65881 4.69791 4.88308 4.92837 4.98650 4.99690 5.05658 5.20542 5.34906 5.41146 5.56068 5.75126 5.81678 6.04329 6.06351 6.69095 6.76671 6.99053 7.27038 7.45944 8.83744 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019981 B = 0.003645 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.964337 B = 7679.060836 C = 8512.821210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.096 3.904 3 N -0.600 5.600 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.257 1.257 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.491 3.509 14 O -0.592 6.592 15 C 0.060 3.940 16 O -0.395 6.395 17 C 0.095 3.905 18 C -0.062 4.062 19 C -0.160 4.160 20 C 0.083 3.917 21 N -0.510 5.510 22 C 0.083 3.917 23 C -0.158 4.158 24 H 0.036 0.964 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.074 0.926 28 H 0.106 0.894 29 H 0.026 0.974 30 H -0.008 1.008 31 H 0.267 0.733 32 H 0.109 0.891 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.178 0.822 38 H 0.179 0.821 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.862 -10.270 19.530 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.026 4.026 3 N -0.333 5.333 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.073 0.927 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.181 1.181 11 H -0.203 1.203 12 H -0.205 1.205 13 C 0.279 3.721 14 O -0.472 6.472 15 C -0.019 4.019 16 O -0.314 6.314 17 C 0.020 3.980 18 C -0.070 4.070 19 C -0.179 4.179 20 C -0.073 4.073 21 N -0.220 5.220 22 C -0.073 4.073 23 C -0.177 4.177 24 H 0.055 0.945 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.124 0.876 29 H 0.044 0.956 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.169 0.831 37 H 0.195 0.805 38 H 0.196 0.804 39 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.402 -8.809 19.965 22.480 hybrid contribution 0.582 -0.324 -1.457 1.602 sum -4.820 -9.133 18.508 21.194 Atomic orbital electron populations 1.22181 0.94419 1.03713 1.01771 1.21849 0.95449 0.80895 1.04401 1.48248 1.63934 1.15344 1.05735 1.18700 0.95415 0.91398 0.80303 1.21711 0.97935 1.32193 1.06608 0.92684 1.25886 1.02505 0.94412 0.96441 1.70045 1.37909 1.34080 1.14832 0.85461 0.78839 0.79186 0.77290 1.18112 1.20340 1.20503 1.21134 0.77735 0.86647 0.86557 1.90666 1.47496 1.21016 1.88017 1.22351 1.03646 0.92552 0.83348 1.88068 1.88959 1.40495 1.13876 1.21600 1.02707 0.93957 0.79764 1.20315 0.94360 0.96854 0.95462 1.22375 0.97022 1.00626 0.97897 1.23177 0.99525 0.90814 0.93810 1.67688 1.02543 1.23999 1.27758 1.23203 0.93455 0.96902 0.93750 1.22374 1.01789 0.95723 0.97830 0.94459 0.88269 0.91934 0.90716 0.87591 0.95611 0.98964 0.92379 0.87300 0.86833 0.89167 0.89489 0.83053 0.80520 0.80373 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.68 5.93 86.38 0.51 3.20 16 3 N -0.60 -25.16 2.46 -826.15 -2.03 -27.19 16 4 C 0.26 14.38 5.16 85.63 0.44 14.82 16 5 C -0.55 -31.84 9.39 25.60 0.24 -31.60 16 6 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 7 C 0.01 0.38 5.46 84.66 0.46 0.84 16 8 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 9 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 C 0.49 20.92 7.75 87.66 0.68 21.60 16 14 O -0.59 -33.09 16.08 16.01 0.26 -32.84 16 15 C 0.06 1.61 4.97 71.24 0.35 1.97 16 16 O -0.39 -12.00 9.86 -129.94 -1.28 -13.28 16 17 C 0.10 1.80 6.11 71.24 0.44 2.24 16 18 C -0.06 -1.33 5.55 -19.67 -0.11 -1.44 16 19 C -0.16 -3.30 9.82 22.36 0.22 -3.08 16 20 C 0.08 1.74 11.18 84.68 0.95 2.69 16 21 N -0.51 -12.17 10.36 -195.85 -2.03 -14.20 16 22 C 0.08 1.71 11.18 84.68 0.95 2.66 16 23 C -0.16 -3.15 9.82 22.36 0.22 -2.93 16 24 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 1.24 7.22 -2.39 -0.02 1.23 16 27 H 0.07 2.26 8.07 -2.39 -0.02 2.24 16 28 H 0.11 2.07 6.44 -2.39 -0.02 2.05 16 29 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 30 H -0.01 -0.50 7.42 -2.39 -0.02 -0.52 16 31 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 32 H 0.11 2.19 7.40 -2.39 -0.02 2.17 16 33 H 0.11 2.15 7.18 -2.39 -0.02 2.13 16 34 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.09 1.21 8.10 -2.39 -0.02 1.19 16 36 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 38 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 Total: -1.00 -84.56 338.10 4.35 -80.21 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 1.03 Total: 8.61 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: 6.09 Total: 8.09 kcal Atomic # 7 Polarization: -94.30 SS G_CDS: -3.77 Total: -98.07 kcal Atomic # 8 Polarization: -45.10 SS G_CDS: -1.02 Total: -46.12 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -84.56 4.35 -80.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322952195.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.804 kcal (2) G-P(sol) polarization free energy of solvation -84.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds