Wall clock time and date at job start Tue Mar 31 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35762 * 119.62393 * 2 1 4 4 C 1.35354 * 120.70391 * 179.97438 * 3 2 1 5 5 C 1.40197 * 119.94549 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.36430 * 180.02562 * 5 4 3 7 7 N 1.46907 * 109.47229 * 275.00093 * 6 5 4 8 8 C 1.47894 * 110.99872 * 69.87758 * 7 6 5 9 9 C 1.53994 * 107.05737 * 214.15732 * 8 7 6 10 10 C 1.54599 * 105.13931 * 1.22385 * 9 8 7 11 11 O 1.42904 * 110.72167 * 263.42432 * 10 9 8 12 12 C 1.50697 * 110.72228 * 140.31610 * 10 9 8 13 13 H 1.07999 * 119.99779 * 241.44732 * 12 10 9 14 14 C 1.37877 * 120.00317 * 61.46071 * 12 10 9 15 15 N 1.31517 * 119.99835 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00334 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47063 * 89.99237 * 16 14 12 18 18 H 1.48494 * 109.47211 * 209.99515 * 16 14 12 19 19 H 1.48500 * 109.46866 * 329.99441 * 16 14 12 20 20 C 1.48535 * 110.99887 * 312.47838 * 7 6 5 21 21 C 1.36396 * 119.26396 * 359.70178 * 5 4 3 22 22 C 1.34662 * 119.62692 * 179.97438 * 2 1 3 23 23 O 1.22063 * 119.98236 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47249 * 270.02321 * 1 2 3 25 25 H 1.09001 * 109.46933 * 30.02667 * 1 2 3 26 26 H 1.09000 * 109.46763 * 150.02264 * 1 2 3 27 27 H 1.07997 * 119.64966 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.02806 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47384 * 35.00161 * 6 5 4 30 30 H 1.08998 * 109.47086 * 155.00272 * 6 5 4 31 31 H 1.09003 * 109.91887 * 333.50811 * 8 7 6 32 32 H 1.08998 * 109.92212 * 94.80609 * 8 7 6 33 33 H 1.09005 * 110.31114 * 120.14004 * 9 8 7 34 34 H 1.08998 * 110.30981 * 242.20759 * 9 8 7 35 35 H 0.96698 * 113.99835 * 298.54021 * 11 10 9 36 36 H 0.96994 * 119.99998 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.66860 * 278.15631 * 20 7 6 38 38 H 1.09002 * 110.66629 * 41.28461 * 20 7 6 39 39 H 1.08004 * 120.34808 * 180.29407 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1802 0.0000 4 6 3.4894 1.2057 0.0005 5 6 4.2120 0.0043 0.0005 6 6 5.7188 0.0217 0.0017 7 7 6.2082 0.1487 -1.3777 8 6 5.9219 1.4946 -1.9197 9 6 5.6311 1.3239 -3.4223 10 6 5.7396 -0.1958 -3.6845 11 8 7.0358 -0.5315 -4.1839 12 6 4.6675 -0.6498 -4.6413 13 1 3.9339 -1.3764 -4.3249 14 6 4.6234 -0.1376 -5.9207 15 7 5.5166 0.7475 -6.3058 16 14 3.2949 -0.7008 -7.1069 17 1 2.1091 0.1838 -6.9784 18 1 3.8126 -0.6358 -8.4971 19 1 2.9067 -2.0983 -6.7881 20 6 5.5144 -0.8069 -2.2787 21 6 3.5360 -1.1804 0.0062 22 6 2.1307 -1.1706 0.0005 23 8 1.5132 -2.2235 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.5843 2.1085 -0.0004 28 1 4.0121 2.1507 0.0001 29 1 6.0720 0.8673 0.5918 30 1 6.0925 -0.9057 0.4358 31 1 5.0517 1.9192 -1.4191 32 1 6.7869 2.1429 -1.7803 33 1 4.6268 1.6773 -3.6559 34 1 6.3692 1.8651 -4.0143 35 1 7.2537 -0.1106 -5.0267 36 1 5.4854 1.1080 -7.2057 37 1 5.9670 -1.7963 -2.2122 38 1 4.4507 -0.8528 -2.0451 39 1 4.0751 -2.1163 0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326051017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:54 Heat of formation + Delta-G solvation = -35.159802 kcal Electronic energy + Delta-G solvation = -22662.713328 eV Core-core repulsion = 19378.144432 eV Total energy + Delta-G solvation = -3284.568896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28409 -38.73237 -36.74214 -35.56831 -33.69389 -32.08965 -30.55943 -29.67362 -27.98138 -27.63989 -25.61827 -23.98115 -23.61159 -21.51391 -19.95200 -19.45630 -17.30839 -17.29103 -17.03447 -16.12735 -15.97394 -15.11612 -14.93829 -14.65206 -14.24480 -14.08741 -13.56243 -13.37735 -13.22105 -12.81843 -12.68818 -12.27396 -12.00074 -11.74660 -11.57810 -11.47392 -11.26746 -11.01796 -10.83739 -10.64695 -10.43276 -10.33334 -9.89787 -9.75289 -9.65619 -9.12817 -8.57332 -8.08540 -7.84115 -7.75190 -6.19014 -4.26395 0.91769 1.96882 2.71500 3.21872 3.29691 3.35518 3.74483 4.31234 4.51424 4.60259 4.70441 4.92909 5.07523 5.10929 5.12103 5.28807 5.34527 5.52497 5.58606 5.71454 5.86448 5.98881 6.02190 6.06267 6.14986 6.23071 6.48540 6.50319 6.58590 6.64838 6.91287 7.05453 7.13267 7.38882 7.52436 7.54722 7.64937 7.84201 8.15228 8.21936 8.76548 9.42374 9.58276 10.87990 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.006896 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.720218 B = 4059.179984 C = 5031.199477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.500 5.500 3 C 0.124 3.876 4 C -0.215 4.215 5 C -0.012 4.012 6 C 0.073 3.927 7 N -0.498 5.498 8 C 0.023 3.977 9 C -0.127 4.127 10 C 0.257 3.743 11 O -0.580 6.580 12 C -0.534 4.534 13 H 0.059 0.941 14 C 0.072 3.928 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.043 3.957 21 C -0.230 4.230 22 C 0.515 3.485 23 O -0.560 6.560 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.160 0.840 28 H 0.145 0.855 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.376 0.624 36 H 0.266 0.734 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.775 5.732 12.627 15.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.212 5.212 3 C -0.002 4.002 4 C -0.238 4.238 5 C -0.018 4.018 6 C -0.055 4.055 7 N -0.220 5.220 8 C -0.105 4.105 9 C -0.166 4.166 10 C 0.216 3.784 11 O -0.388 6.388 12 C -0.573 4.573 13 H 0.077 0.923 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.084 4.084 21 C -0.253 4.253 22 C 0.318 3.682 23 O -0.443 6.443 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.177 0.823 28 H 0.163 0.837 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.226 0.774 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.552 4.708 13.039 14.934 hybrid contribution -1.691 0.493 -1.337 2.211 sum -7.243 5.201 11.703 14.713 Atomic orbital electron populations 1.22103 0.77646 1.04964 1.03386 1.45342 1.09007 1.06944 1.59902 1.21847 0.93745 0.89250 0.95373 1.20653 0.92374 0.99092 1.11683 1.21019 0.98824 0.92734 0.89213 1.21590 0.86756 1.03393 0.93791 1.65201 1.51929 1.05012 0.99857 1.23137 0.98844 0.90698 0.97796 1.22896 1.01174 1.01050 0.91465 1.19320 0.82122 0.88425 0.88498 1.86145 1.35647 1.74592 1.42438 1.21610 1.13155 1.25101 0.97442 0.92307 1.24971 0.95883 0.94173 0.98013 1.69732 1.35144 1.29322 1.19262 0.86537 0.81632 0.79385 0.80158 1.20693 1.20976 1.19709 1.23428 0.96434 0.95882 0.92692 1.22013 0.92356 0.99638 1.11334 1.17119 0.89282 0.82616 0.79194 1.90929 1.69977 1.29623 1.53787 0.90939 0.89852 0.88873 0.82288 0.83697 0.89886 0.89640 0.93972 0.91817 0.92284 0.91586 0.77433 0.92432 0.91020 0.92399 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 10.36 59.85 0.62 1.22 16 2 N -0.50 -6.63 2.99 -127.20 -0.38 -7.01 16 3 C 0.12 1.36 10.28 -16.84 -0.17 1.19 16 4 C -0.21 -2.64 8.25 -39.87 -0.33 -2.97 16 5 C -0.01 -0.18 3.82 -104.55 -0.40 -0.58 16 6 C 0.07 1.07 5.72 -4.97 -0.03 1.04 16 7 N -0.50 -9.34 5.54 -231.89 -1.28 -10.63 16 8 C 0.02 0.42 6.46 -2.76 -0.02 0.40 16 9 C -0.13 -2.88 5.26 -25.37 -0.13 -3.02 16 10 C 0.26 6.43 0.95 -89.91 -0.09 6.35 16 11 O -0.58 -15.46 13.10 -35.23 -0.46 -15.92 16 12 C -0.53 -14.61 8.14 -34.44 -0.28 -14.89 16 13 H 0.06 1.64 7.78 -52.49 -0.41 1.23 16 14 C 0.07 1.92 5.28 -17.82 -0.09 1.83 16 15 N -0.90 -24.01 11.00 55.43 0.61 -23.40 16 16 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 C 0.04 0.93 5.28 -1.90 -0.01 0.92 16 21 C -0.23 -3.76 7.86 -39.38 -0.31 -4.07 16 22 C 0.51 8.84 7.41 -15.45 -0.11 8.73 16 23 O -0.56 -11.39 16.64 4.86 0.08 -11.31 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.57 8.01 -51.93 -0.42 0.15 16 26 H 0.09 1.08 7.39 -51.93 -0.38 0.70 16 27 H 0.16 1.06 8.04 -52.49 -0.42 0.64 16 28 H 0.15 1.50 6.78 -52.49 -0.36 1.14 16 29 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 30 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 31 H 0.04 0.67 4.45 -51.93 -0.23 0.44 16 32 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 1.40 7.84 -51.93 -0.41 1.00 16 34 H 0.07 1.58 7.99 -51.93 -0.41 1.17 16 35 H 0.38 10.08 7.46 45.56 0.34 10.42 16 36 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.20 16 38 H 0.06 1.27 5.02 -51.93 -0.26 1.01 16 39 H 0.15 2.39 8.06 -52.48 -0.42 1.97 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -32.30 312.86 -7.72 -40.02 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.62 Total: 11.34 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.36 Total: -3.85 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: -1.05 Total: -41.04 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.38 Total: -27.23 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.30 -7.72 -40.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326051017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.860 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds