Wall clock time and date at job start Tue Mar 31 2020 01:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35762 * 119.62393 * 2 1 4 4 C 1.35354 * 120.70391 * 179.97438 * 3 2 1 5 5 C 1.40197 * 119.94549 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.36430 * 180.02562 * 5 4 3 7 7 N 1.46907 * 109.47229 * 275.00093 * 6 5 4 8 8 C 1.47894 * 110.99872 * 69.87758 * 7 6 5 9 9 C 1.53994 * 107.05737 * 214.15732 * 8 7 6 10 10 C 1.54599 * 105.13931 * 1.22385 * 9 8 7 11 11 O 1.42904 * 110.72167 * 263.42432 * 10 9 8 12 12 C 1.50697 * 110.72228 * 140.31610 * 10 9 8 13 13 H 1.07999 * 119.99779 * 241.44732 * 12 10 9 14 14 C 1.37877 * 120.00317 * 61.46071 * 12 10 9 15 15 N 1.31517 * 119.99835 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00334 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47063 * 89.99237 * 16 14 12 18 18 H 1.48494 * 109.47211 * 209.99515 * 16 14 12 19 19 H 1.48500 * 109.46866 * 329.99441 * 16 14 12 20 20 C 1.48535 * 110.99887 * 312.47838 * 7 6 5 21 21 C 1.36396 * 119.26396 * 359.70178 * 5 4 3 22 22 C 1.34662 * 119.62692 * 179.97438 * 2 1 3 23 23 O 1.22063 * 119.98236 * 0.02562 * 22 2 1 24 24 H 1.08991 * 109.47249 * 270.02321 * 1 2 3 25 25 H 1.09001 * 109.46933 * 30.02667 * 1 2 3 26 26 H 1.09000 * 109.46763 * 150.02264 * 1 2 3 27 27 H 1.07997 * 119.64966 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.02806 * 179.97438 * 4 3 2 29 29 H 1.09005 * 109.47384 * 35.00161 * 6 5 4 30 30 H 1.08998 * 109.47086 * 155.00272 * 6 5 4 31 31 H 1.09003 * 109.91887 * 333.50811 * 8 7 6 32 32 H 1.08998 * 109.92212 * 94.80609 * 8 7 6 33 33 H 1.09005 * 110.31114 * 120.14004 * 9 8 7 34 34 H 1.08998 * 110.30981 * 242.20759 * 9 8 7 35 35 H 0.96698 * 113.99835 * 298.54021 * 11 10 9 36 36 H 0.96994 * 119.99998 * 180.02562 * 15 14 12 37 37 H 1.09004 * 110.66860 * 278.15631 * 20 7 6 38 38 H 1.09002 * 110.66629 * 41.28461 * 20 7 6 39 39 H 1.08004 * 120.34808 * 180.29407 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1361 1.1802 0.0000 4 6 3.4894 1.2057 0.0005 5 6 4.2120 0.0043 0.0005 6 6 5.7188 0.0217 0.0017 7 7 6.2082 0.1487 -1.3777 8 6 5.9219 1.4946 -1.9197 9 6 5.6311 1.3239 -3.4223 10 6 5.7396 -0.1958 -3.6845 11 8 7.0358 -0.5315 -4.1839 12 6 4.6675 -0.6498 -4.6413 13 1 3.9339 -1.3764 -4.3249 14 6 4.6234 -0.1376 -5.9207 15 7 5.5166 0.7475 -6.3058 16 14 3.2949 -0.7008 -7.1069 17 1 2.1091 0.1838 -6.9784 18 1 3.8126 -0.6358 -8.4971 19 1 2.9067 -2.0983 -6.7881 20 6 5.5144 -0.8069 -2.2787 21 6 3.5360 -1.1804 0.0062 22 6 2.1307 -1.1706 0.0005 23 8 1.5132 -2.2235 0.0005 24 1 -0.3633 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5143 26 1 -0.3633 -0.8902 -0.5135 27 1 1.5843 2.1085 -0.0004 28 1 4.0121 2.1507 0.0001 29 1 6.0720 0.8673 0.5918 30 1 6.0925 -0.9057 0.4358 31 1 5.0517 1.9192 -1.4191 32 1 6.7869 2.1429 -1.7803 33 1 4.6268 1.6773 -3.6559 34 1 6.3692 1.8651 -4.0143 35 1 7.2537 -0.1106 -5.0267 36 1 5.4854 1.1080 -7.2057 37 1 5.9670 -1.7963 -2.2122 38 1 4.4507 -0.8528 -2.0451 39 1 4.0751 -2.1163 0.0111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326051017.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:53 Heat of formation + Delta-G solvation = -60.380588 kcal Electronic energy + Delta-G solvation = -22663.806983 eV Core-core repulsion = 19378.144432 eV Total energy + Delta-G solvation = -3285.662551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.41111 -40.28359 -38.08248 -37.09635 -35.12127 -34.18025 -31.91577 -30.98286 -29.66656 -28.84799 -27.14830 -25.57873 -24.68783 -22.80646 -21.52805 -21.18790 -19.04332 -18.43142 -18.30549 -17.35559 -17.12987 -16.94380 -16.65878 -16.14859 -15.79601 -15.23867 -15.11663 -14.80908 -14.46017 -14.16921 -13.89277 -13.70113 -13.47878 -13.29497 -13.03654 -12.89340 -12.77800 -12.57691 -12.53746 -12.35074 -12.20083 -12.10775 -11.57975 -11.16474 -11.05050 -10.76488 -10.60847 -10.08664 -9.24945 -8.95206 -8.23804 -6.38724 -0.15192 0.85835 1.33307 1.37318 1.46837 1.73170 2.34808 2.60383 3.00505 3.23356 3.62180 3.74670 3.87422 3.97183 4.07299 4.19047 4.28462 4.31269 4.41002 4.44175 4.54754 4.66016 4.73882 4.76309 4.87164 4.92676 4.96593 5.10134 5.15781 5.28313 5.39669 5.51575 5.58924 5.61725 5.77953 5.91622 6.05239 6.15616 6.30645 6.66144 6.95913 7.32891 7.49387 8.81397 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015836 B = 0.006896 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.720218 B = 4059.179984 C = 5031.199477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.498 5.498 3 C 0.144 3.856 4 C -0.234 4.234 5 C 0.001 3.999 6 C 0.072 3.928 7 N -0.506 5.506 8 C 0.031 3.969 9 C -0.117 4.117 10 C 0.237 3.763 11 O -0.591 6.591 12 C -0.562 4.562 13 H 0.039 0.961 14 C 0.037 3.963 15 N -0.906 5.906 16 Si 0.949 3.051 17 H -0.271 1.271 18 H -0.275 1.275 19 H -0.282 1.282 20 C 0.055 3.945 21 C -0.270 4.270 22 C 0.497 3.503 23 O -0.613 6.613 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.067 0.933 27 H 0.217 0.783 28 H 0.177 0.823 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.371 0.629 36 H 0.270 0.730 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 8.778 13.597 17.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.207 5.207 3 C 0.017 3.983 4 C -0.256 4.256 5 C -0.005 4.005 6 C -0.056 4.056 7 N -0.228 5.228 8 C -0.097 4.097 9 C -0.156 4.156 10 C 0.197 3.803 11 O -0.399 6.399 12 C -0.600 4.600 13 H 0.058 0.942 14 C -0.164 4.164 15 N -0.545 5.545 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.200 1.200 19 H -0.207 1.207 20 C -0.073 4.073 21 C -0.293 4.293 22 C 0.302 3.698 23 O -0.502 6.502 24 H 0.112 0.888 25 H 0.142 0.858 26 H 0.086 0.914 27 H 0.234 0.766 28 H 0.194 0.806 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.220 0.780 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.478 7.795 14.025 17.304 hybrid contribution -1.411 -0.389 -1.624 2.187 sum -7.889 7.406 12.401 16.458 Atomic orbital electron populations 1.22402 0.75502 1.05702 1.05094 1.45495 1.10595 1.06692 1.57884 1.22760 0.93917 0.89938 0.91640 1.21051 0.93221 0.99101 1.12198 1.21116 0.98778 0.93079 0.87506 1.21738 0.86943 1.05298 0.91595 1.65105 1.52098 1.04388 1.01170 1.23117 1.01072 0.90778 0.94687 1.22656 0.99655 0.98676 0.94607 1.19602 0.80721 0.90522 0.89433 1.86139 1.36645 1.74950 1.42134 1.21799 1.13892 1.25452 0.98898 0.94219 1.25561 0.97626 0.94182 0.99071 1.69794 1.35697 1.29336 1.19644 0.85704 0.79758 0.78466 0.78577 1.19595 1.20038 1.20711 1.23144 0.96338 0.95683 0.92093 1.21886 0.92511 1.00014 1.14933 1.17293 0.89668 0.83283 0.79527 1.90880 1.70849 1.31574 1.56886 0.88797 0.85784 0.91432 0.76643 0.80617 0.86216 0.89406 0.90750 0.89982 0.93765 0.93404 0.78047 0.92072 0.92975 0.92747 0.85380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 10.36 127.77 1.32 2.24 16 2 N -0.50 -12.15 2.99 -674.49 -2.01 -14.16 16 3 C 0.14 2.49 10.28 83.42 0.86 3.35 16 4 C -0.23 -4.75 8.25 22.08 0.18 -4.57 16 5 C 0.00 0.04 3.82 -19.82 -0.08 -0.04 16 6 C 0.07 1.93 5.72 85.55 0.49 2.42 16 7 N -0.51 -18.18 5.54 -887.57 -4.91 -23.09 16 8 C 0.03 1.04 6.46 86.45 0.56 1.59 16 9 C -0.12 -5.23 5.26 31.47 0.17 -5.07 16 10 C 0.24 12.06 0.95 -10.34 -0.01 12.05 16 11 O -0.59 -32.20 13.10 -148.98 -1.95 -34.15 16 12 C -0.56 -31.43 8.14 25.60 0.21 -31.23 16 13 H 0.04 2.30 7.78 -2.91 -0.02 2.28 16 14 C 0.04 1.98 5.28 84.65 0.45 2.43 16 15 N -0.91 -48.64 11.00 21.45 0.24 -48.41 16 16 Si 0.95 43.30 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 19 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 20 C 0.06 2.45 5.28 86.65 0.46 2.91 16 21 C -0.27 -9.07 7.86 22.40 0.18 -8.90 16 22 C 0.50 17.44 7.41 84.82 0.63 18.07 16 23 O -0.61 -26.45 16.64 -5.52 -0.09 -26.54 16 24 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.12 1.12 8.01 -2.39 -0.02 1.10 16 26 H 0.07 1.55 7.39 -2.39 -0.02 1.53 16 27 H 0.22 1.27 8.04 -2.91 -0.02 1.25 16 28 H 0.18 2.51 6.78 -2.91 -0.02 2.49 16 29 H 0.12 2.39 8.07 -2.38 -0.02 2.37 16 30 H 0.09 2.32 8.05 -2.39 -0.02 2.31 16 31 H 0.07 2.03 4.45 -2.39 -0.01 2.02 16 32 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 33 H 0.04 2.06 7.84 -2.38 -0.02 2.04 16 34 H 0.05 2.27 7.99 -2.39 -0.02 2.25 16 35 H 0.37 20.39 7.46 -74.06 -0.55 19.83 16 36 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 37 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 38 H 0.05 2.46 5.02 -2.39 -0.01 2.45 16 39 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -74.38 312.86 -0.79 -75.17 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.51 Total: 30.59 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: 5.41 Total: -4.74 kcal Atomic # 7 Polarization: -78.97 SS G_CDS: -6.69 Total: -85.66 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -2.04 Total: -60.69 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -74.38 -0.79 -75.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326051017.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.788 kcal (2) G-P(sol) polarization free energy of solvation -74.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds