Wall clock time and date at job start Tue Mar 31 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 110.99750 * 2 1 4 4 C 1.46899 * 111.00210 * 123.95209 * 2 1 3 5 5 C 1.53004 * 109.46809 * 66.05087 * 4 2 1 6 6 O 1.42899 * 109.47260 * 64.99544 * 5 4 2 7 7 N 1.41601 * 113.99751 * 179.97438 * 6 5 4 8 8 C 1.34780 * 119.99764 * 180.02562 * 7 6 5 9 9 O 1.21544 * 119.99932 * 0.02562 * 8 7 6 10 10 C 1.47887 * 119.99821 * 180.02562 * 8 7 6 11 11 C 1.39922 * 120.02762 * 359.97438 * 10 8 7 12 12 C 1.38324 * 120.35956 * 180.02562 * 11 10 8 13 13 C 1.37743 * 120.41166 * 359.97438 * 12 11 10 14 14 C 1.40753 * 120.04404 * 0.02562 * 13 12 11 15 15 C 1.41428 * 120.18094 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00377 * 24.37846 * 15 14 13 17 17 C 1.39938 * 120.00012 * 204.38668 * 15 14 13 18 18 N 1.30825 * 119.99869 * 17.84278 * 17 15 14 19 19 Si 1.86804 * 120.00158 * 197.84304 * 17 15 14 20 20 H 1.48505 * 109.46701 * 94.69079 * 19 17 15 21 21 H 1.48499 * 109.47242 * 214.69090 * 19 17 15 22 22 H 1.48500 * 109.47130 * 334.69434 * 19 17 15 23 23 C 1.38993 * 120.02489 * 179.97438 * 10 8 7 24 24 H 1.08992 * 109.47300 * 296.04717 * 1 2 3 25 25 H 1.09005 * 109.47186 * 56.04745 * 1 2 3 26 26 H 1.09001 * 109.46734 * 176.04282 * 1 2 3 27 27 H 1.08995 * 109.47256 * 183.95567 * 3 2 1 28 28 H 1.09003 * 109.47459 * 303.95579 * 3 2 1 29 29 H 1.08996 * 109.47222 * 63.95255 * 3 2 1 30 30 H 1.08997 * 109.47286 * 306.05192 * 4 2 1 31 31 H 1.08998 * 109.47196 * 186.04415 * 4 2 1 32 32 H 1.09000 * 109.46789 * 304.99845 * 5 4 2 33 33 H 1.08998 * 109.47029 * 185.00017 * 5 4 2 34 34 H 0.97004 * 120.00096 * 0.02562 * 7 6 5 35 35 H 1.08009 * 119.81952 * 0.02562 * 11 10 8 36 36 H 1.08004 * 119.79125 * 180.02562 * 12 11 10 37 37 H 1.08004 * 119.98157 * 179.97438 * 13 12 11 38 38 H 0.97002 * 120.00058 * 179.97438 * 18 17 15 39 39 H 1.07998 * 120.19965 * 359.70686 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6316 -2.2426 0.9703 6 8 2.2957 -2.7695 -0.1801 7 7 2.0248 -4.1376 -0.4253 8 6 2.5895 -4.7578 -1.4803 9 8 3.3316 -4.1429 -2.2209 10 6 2.3062 -6.1865 -1.7366 11 6 1.4525 -6.8950 -0.8839 12 6 1.1832 -8.2316 -1.1170 13 6 1.7515 -8.8805 -2.1908 14 6 2.6129 -8.1843 -3.0595 15 6 3.1976 -8.8476 -4.1633 16 1 2.7210 -9.7213 -4.5828 17 6 4.3938 -8.3719 -4.7120 18 7 5.1505 -7.5564 -4.0236 19 14 4.9103 -8.9015 -6.4273 20 1 4.4599 -7.8879 -7.4148 21 1 6.3892 -9.0241 -6.4833 22 1 4.2924 -10.2132 -6.7475 23 6 2.8879 -6.8265 -2.8247 24 1 -0.3633 0.4512 0.9232 25 1 -0.3634 0.5740 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9164 -0.8524 29 1 1.7043 1.8724 0.9232 30 1 1.5611 -0.3873 2.0628 31 1 3.0798 -0.6611 1.1756 32 1 0.5533 -2.3389 0.8432 33 1 1.9440 -2.7964 1.8556 34 1 1.4329 -4.6284 0.1661 35 1 1.0013 -6.3954 -0.0392 36 1 0.5225 -8.7695 -0.4532 37 1 1.5368 -9.9244 -2.3660 38 1 5.9799 -7.2270 -4.4037 39 1 3.5437 -6.2823 -3.4882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328382602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:03 Heat of formation + Delta-G solvation = -24.095258 kcal Electronic energy + Delta-G solvation = -20904.919156 eV Core-core repulsion = 17620.830055 eV Total energy + Delta-G solvation = -3284.089101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77966 -39.28762 -38.65617 -37.44951 -35.62915 -33.71302 -31.76626 -31.28180 -30.16418 -28.52710 -27.18107 -25.19106 -24.42722 -22.81329 -22.20293 -21.26622 -19.61848 -19.14513 -17.70800 -17.31821 -17.03720 -16.52085 -16.20834 -16.03411 -15.83846 -15.74468 -15.06548 -14.92272 -14.70482 -14.30576 -14.15667 -13.54041 -13.48648 -13.26027 -12.97607 -12.81549 -12.75054 -12.68284 -12.53884 -12.23505 -12.17079 -11.89721 -11.81523 -11.50649 -11.07870 -10.90980 -9.96439 -9.48191 -9.39236 -9.28075 -8.65870 -6.37410 0.35039 0.92981 1.00988 1.38339 1.49521 1.53285 2.08105 2.20618 2.78397 2.94840 3.52914 3.69579 3.84011 3.93523 4.07114 4.19476 4.36661 4.41927 4.43652 4.50874 4.58040 4.60633 4.70236 4.79008 4.89966 4.98873 5.00793 5.08531 5.17553 5.31167 5.49664 5.76746 5.84254 5.90439 6.03298 6.05775 6.08408 6.26902 6.42887 6.62442 6.88292 6.94443 7.34949 8.30923 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024316 B = 0.003601 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.210215 B = 7773.184752 C = 8587.691896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.577 5.577 3 C 0.028 3.972 4 C 0.064 3.936 5 C 0.024 3.976 6 O -0.160 6.160 7 N -0.582 5.582 8 C 0.572 3.428 9 O -0.580 6.580 10 C -0.125 4.125 11 C -0.199 4.199 12 C -0.091 4.091 13 C -0.214 4.214 14 C 0.069 3.931 15 C -0.494 4.494 16 H 0.087 0.913 17 C 0.028 3.972 18 N -0.824 5.824 19 Si 0.983 3.017 20 H -0.268 1.268 21 H -0.270 1.270 22 H -0.248 1.248 23 C -0.129 4.129 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.422 0.578 35 H 0.139 0.861 36 H 0.144 0.856 37 H 0.112 0.888 38 H 0.287 0.713 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.191 10.400 11.854 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.302 5.302 3 C -0.120 4.120 4 C -0.065 4.065 5 C -0.053 4.053 6 O -0.165 6.165 7 N -0.286 5.286 8 C 0.363 3.637 9 O -0.460 6.460 10 C -0.129 4.129 11 C -0.218 4.218 12 C -0.109 4.109 13 C -0.233 4.233 14 C 0.067 3.933 15 C -0.524 4.524 16 H 0.105 0.895 17 C -0.187 4.187 18 N -0.450 5.450 19 Si 0.804 3.196 20 H -0.193 1.193 21 H -0.194 1.194 22 H -0.172 1.172 23 C -0.150 4.150 24 H 0.062 0.938 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.266 0.734 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.130 0.870 38 H 0.097 0.903 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.167 10.869 10.817 17.373 hybrid contribution 0.034 0.239 0.278 0.368 sum -8.132 11.107 11.095 17.681 Atomic orbital electron populations 1.22450 0.86375 1.02330 1.01386 1.61862 1.09185 1.15184 1.43944 1.22365 1.00670 0.87641 1.01329 1.22144 1.01576 0.89895 0.92869 1.23422 0.98326 0.95219 0.88312 1.90693 1.69753 1.06721 1.49303 1.47218 1.50861 1.00446 1.30064 1.18858 0.78911 0.86990 0.78933 1.90693 1.38858 1.67599 1.48834 1.19436 1.03407 0.90054 0.99979 1.20857 1.03665 0.95650 1.01661 1.20934 0.98884 0.94155 0.96919 1.21444 1.05005 0.99282 0.97616 1.17920 0.91679 0.90990 0.92728 1.19894 1.06382 1.12767 1.13315 0.89484 1.26882 0.95604 0.93391 1.02808 1.69891 1.10807 1.26089 1.38191 0.85169 0.77985 0.79897 0.76552 1.19334 1.19429 1.17155 1.21412 1.01010 0.94858 0.97674 0.93760 0.91264 0.91789 0.91792 0.91086 0.93972 0.89330 0.90231 0.90633 0.89453 0.73366 0.84344 0.83849 0.86981 0.90281 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.33 127.69 1.19 1.58 16 2 N -0.58 -12.53 4.97 -948.86 -4.71 -17.24 16 3 C 0.03 0.48 9.57 127.69 1.22 1.70 16 4 C 0.06 1.18 5.34 86.30 0.46 1.65 16 5 C 0.02 0.51 6.28 71.98 0.45 0.96 16 6 O -0.16 -5.54 11.05 -21.43 -0.24 -5.78 16 7 N -0.58 -20.66 6.34 -175.57 -1.11 -21.77 16 8 C 0.57 27.14 7.92 86.80 0.69 27.83 16 9 O -0.58 -33.46 16.74 13.50 0.23 -33.24 16 10 C -0.13 -5.99 5.87 -20.13 -0.12 -6.11 16 11 C -0.20 -7.57 9.55 22.70 0.22 -7.36 16 12 C -0.09 -3.46 10.01 22.17 0.22 -3.23 16 13 C -0.21 -9.72 9.78 22.77 0.22 -9.50 16 14 C 0.07 3.73 5.57 -21.32 -0.12 3.62 16 15 C -0.49 -26.80 9.05 23.47 0.21 -26.59 16 16 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 17 C 0.03 1.49 5.14 85.25 0.44 1.92 16 18 N -0.82 -46.58 10.96 21.82 0.24 -46.34 16 19 Si 0.98 39.94 29.60 68.60 2.03 41.97 16 20 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 21 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 22 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.13 -7.23 8.23 23.01 0.19 -7.04 16 24 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.07 1.18 8.12 -2.38 -0.02 1.16 16 26 H 0.06 1.16 6.37 -2.39 -0.02 1.15 16 27 H 0.06 1.16 8.12 -2.39 -0.02 1.14 16 28 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 29 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 1.06 8.12 -2.39 -0.02 1.04 16 31 H 0.08 1.59 8.06 -2.39 -0.02 1.58 16 32 H 0.08 1.35 6.34 -2.39 -0.02 1.33 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.42 11.08 6.56 -92.71 -0.61 10.47 16 35 H 0.14 3.83 6.38 -2.91 -0.02 3.81 16 36 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 39 H 0.10 6.18 5.75 -2.91 -0.02 6.16 16 Total: -1.00 -75.01 331.30 2.16 -72.85 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.45 Total: 30.12 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.28 Total: -20.57 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -5.59 Total: -85.35 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -0.01 Total: -39.01 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -75.01 2.16 -72.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328382602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.755 kcal (2) G-P(sol) polarization free energy of solvation -75.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds