Wall clock time and date at job start Tue Mar 31 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99829 * 2 1 4 4 C 1.46898 * 111.00182 * 123.95567 * 2 1 3 5 5 C 1.52997 * 109.47125 * 66.04410 * 4 2 1 6 6 O 1.42901 * 109.47204 * 65.00201 * 5 4 2 7 7 N 1.41600 * 114.00208 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00338 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 179.97438 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.47021 * 296.04329 * 1 2 3 25 25 H 1.08993 * 109.47300 * 56.04653 * 1 2 3 26 26 H 1.08997 * 109.47111 * 176.04835 * 1 2 3 27 27 H 1.09001 * 109.46743 * 183.95907 * 3 2 1 28 28 H 1.09005 * 109.46883 * 303.95799 * 3 2 1 29 29 H 1.09000 * 109.47154 * 63.95693 * 3 2 1 30 30 H 1.09006 * 109.47193 * 306.04344 * 4 2 1 31 31 H 1.08994 * 109.46912 * 186.04762 * 4 2 1 32 32 H 1.08996 * 109.47371 * 304.99797 * 5 4 2 33 33 H 1.09004 * 109.46961 * 185.00159 * 5 4 2 34 34 H 0.97008 * 119.99662 * 0.02562 * 7 6 5 35 35 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 36 36 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 37 37 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 39 39 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 8 2.2956 -2.7696 -0.1801 7 7 2.0248 -4.1376 -0.4252 8 6 2.5886 -4.7577 -1.4807 9 8 3.3302 -4.1423 -2.2222 10 6 2.3067 -6.1842 -1.7360 11 6 1.4490 -6.8895 -0.8832 12 6 1.1897 -8.2081 -1.1118 13 6 1.7776 -8.8583 -2.2149 14 6 1.5073 -10.2215 -2.4593 15 1 1.2089 -10.8671 -1.6466 16 6 1.6263 -10.7380 -3.7576 17 7 1.6409 -9.9292 -4.7836 18 14 1.7635 -12.5823 -4.0202 19 1 0.4167 -13.1450 -4.2934 20 1 2.6566 -12.8527 -5.1755 21 1 2.3264 -13.2154 -2.8005 22 6 2.6359 -8.1430 -3.0732 23 6 2.8933 -6.8261 -2.8334 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0710 28 1 1.5897 1.9164 -0.8524 29 1 1.7044 1.8724 0.9233 30 1 1.5612 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1755 32 1 0.5533 -2.3389 0.8433 33 1 1.9439 -2.7963 1.8557 34 1 1.4328 -4.6284 0.1662 35 1 0.9949 -6.3890 -0.0407 36 1 0.5312 -8.7524 -0.4512 37 1 1.7236 -10.2864 -5.6816 38 1 3.0885 -8.6372 -3.9202 39 1 3.5514 -6.2770 -3.4905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328383253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:08 Heat of formation + Delta-G solvation = -6.388584 kcal Electronic energy + Delta-G solvation = -20641.807053 eV Core-core repulsion = 17358.485770 eV Total energy + Delta-G solvation = -3283.321282 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.97523 -38.13828 -37.09184 -36.07063 -33.90958 -32.05755 -30.19632 -29.70313 -28.85438 -27.79966 -25.78161 -24.27349 -22.15072 -21.29150 -20.94722 -19.67897 -17.98171 -17.47096 -16.55056 -16.37111 -15.40710 -15.37105 -14.98890 -14.59464 -14.40257 -14.01110 -13.48665 -13.30965 -13.19516 -12.75498 -12.68419 -12.52838 -12.24351 -11.95271 -11.91917 -11.84708 -11.43570 -11.31833 -11.20380 -11.02172 -10.73102 -10.58378 -10.08417 -9.56773 -9.34521 -9.01802 -8.52661 -8.33634 -7.72888 -7.59540 -7.03638 -4.62195 2.22566 2.43601 2.89898 2.95219 3.00087 3.01847 3.69778 3.73635 3.90327 4.56815 4.62530 4.77249 4.92854 4.98623 5.11872 5.17110 5.32687 5.37400 5.42470 5.54753 5.60842 5.68291 5.75742 5.84757 5.94101 6.26117 6.77419 6.78697 6.80644 6.83088 7.01595 7.05547 7.37287 7.41180 7.57563 7.71775 7.84822 8.02037 8.17631 8.40763 8.60860 8.72774 9.15635 9.88355 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047940 B = 0.002867 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.923481 B = 9762.673839 C = 9954.548649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.026 3.974 4 C 0.063 3.937 5 C 0.034 3.966 6 O -0.134 6.134 7 N -0.611 5.611 8 C 0.584 3.416 9 O -0.553 6.553 10 C -0.273 4.273 11 C -0.051 4.051 12 C -0.233 4.233 13 C 0.128 3.872 14 C -0.441 4.441 15 H 0.085 0.915 16 C 0.073 3.927 17 N -0.767 5.767 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.181 4.181 23 C -0.032 4.032 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.023 0.977 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.288 0.712 38 H 0.122 0.878 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 10.792 9.795 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.122 4.122 4 C -0.067 4.067 5 C -0.044 4.044 6 O -0.138 6.138 7 N -0.315 5.315 8 C 0.379 3.621 9 O -0.431 6.431 10 C -0.278 4.278 11 C -0.070 4.070 12 C -0.253 4.253 13 C 0.125 3.875 14 C -0.469 4.469 15 H 0.103 0.897 16 C -0.149 4.149 17 N -0.390 5.390 18 Si 0.736 3.264 19 H -0.193 1.193 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.200 4.200 23 C -0.051 4.051 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.240 0.760 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.211 11.146 8.434 14.151 hybrid contribution -0.856 -0.459 1.133 1.493 sum -3.068 10.687 9.567 14.668 Atomic orbital electron populations 1.22464 0.87306 1.02621 1.00320 1.61882 1.07982 1.13816 1.42774 1.22378 1.01088 0.88422 1.00279 1.22086 1.01724 0.91084 0.91765 1.22956 0.97638 0.94257 0.89541 1.90656 1.68352 1.08471 1.46281 1.47757 1.52826 0.99129 1.31809 1.18681 0.78810 0.86726 0.77919 1.90672 1.38189 1.66900 1.47352 1.18649 1.14012 0.90379 1.04759 1.20350 0.95801 0.94765 0.96080 1.20654 1.06928 0.94289 1.03386 1.17791 0.87141 0.92796 0.89774 1.19842 1.38152 0.94701 0.94164 0.89681 1.26121 0.91926 1.01158 0.95654 1.69747 1.31007 1.37942 1.00294 0.86208 0.79309 0.81444 0.79391 1.19251 1.19677 1.18088 1.21008 1.02310 0.93636 1.03090 1.20455 0.96230 0.94463 0.93993 0.95826 0.91163 0.91058 0.91137 0.91209 0.95896 0.92748 0.89427 0.92356 0.92077 0.75978 0.89412 0.88351 0.90080 0.85995 0.87881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.33 60.07 0.56 0.77 16 2 N -0.54 -6.28 4.97 -251.26 -1.25 -7.53 16 3 C 0.03 0.24 9.57 60.07 0.57 0.82 16 4 C 0.06 0.65 5.34 -3.83 -0.02 0.63 16 5 C 0.03 0.41 6.28 37.16 0.23 0.64 16 6 O -0.13 -2.39 11.05 -29.62 -0.33 -2.72 16 7 N -0.61 -11.28 6.34 30.48 0.19 -11.08 16 8 C 0.58 13.33 7.91 -12.42 -0.10 13.23 16 9 O -0.55 -14.63 16.73 -12.86 -0.22 -14.85 16 10 C -0.27 -6.31 5.89 -104.73 -0.62 -6.93 16 11 C -0.05 -1.07 9.47 -39.61 -0.38 -1.44 16 12 C -0.23 -5.28 9.73 -39.27 -0.38 -5.66 16 13 C 0.13 3.22 5.57 -106.80 -0.60 2.63 16 14 C -0.44 -10.80 9.04 -37.75 -0.34 -11.14 16 15 H 0.09 1.96 7.91 -52.49 -0.42 1.55 16 16 C 0.07 1.71 5.13 -17.31 -0.09 1.62 16 17 N -0.77 -18.59 10.97 55.56 0.61 -17.98 16 18 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 C -0.18 -4.60 8.63 -39.27 -0.34 -4.94 16 23 C -0.03 -0.79 9.52 -39.61 -0.38 -1.16 16 24 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 26 H 0.07 0.74 6.37 -51.93 -0.33 0.41 16 27 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 28 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.09 0.93 8.06 -51.93 -0.42 0.51 16 32 H 0.06 0.63 6.34 -51.93 -0.33 0.31 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 6.00 6.54 -40.82 -0.27 5.73 16 35 H 0.09 1.48 6.37 -52.48 -0.33 1.14 16 36 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 38 H 0.12 3.16 6.17 -52.48 -0.32 2.83 16 39 H 0.10 2.51 7.63 -52.49 -0.40 2.11 16 LS Contribution 331.07 15.07 4.99 4.99 Total: -1.00 -30.87 331.07 -8.23 -39.09 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.33 Total: 8.88 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -1.87 Total: -10.94 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.45 Total: -36.59 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.54 Total: -17.57 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.87 -8.23 -39.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328383253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.705 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds