Wall clock time and date at job start Tue Mar 31 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46902 * 110.99829 * 2 1 4 4 C 1.46898 * 111.00182 * 123.95567 * 2 1 3 5 5 C 1.52997 * 109.47125 * 66.04410 * 4 2 1 6 6 O 1.42901 * 109.47204 * 65.00201 * 5 4 2 7 7 N 1.41600 * 114.00208 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00338 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99579 * 0.02562 * 8 7 6 10 10 C 1.47642 * 120.00628 * 179.97438 * 8 7 6 11 11 C 1.40014 * 119.89046 * 0.25312 * 10 8 7 12 12 C 1.36315 * 120.10857 * 180.25454 * 11 10 8 13 13 C 1.40893 * 119.88481 * 359.47208 * 12 11 10 14 14 C 1.41114 * 120.09748 * 180.29801 * 13 12 11 15 15 H 1.08000 * 120.00330 * 335.06249 * 14 13 12 16 16 C 1.40223 * 119.99644 * 155.06801 * 14 13 12 17 17 N 1.30656 * 120.00207 * 342.19907 * 16 14 13 18 18 Si 1.86803 * 120.00199 * 162.20506 * 16 14 13 19 19 H 1.48503 * 109.47047 * 94.65856 * 18 16 14 20 20 H 1.48504 * 109.47089 * 214.65560 * 18 16 14 21 21 H 1.48498 * 109.46765 * 334.65988 * 18 16 14 22 22 C 1.40884 * 119.79739 * 0.28068 * 13 12 11 23 23 C 1.36315 * 119.88972 * 359.97438 * 22 13 12 24 24 H 1.09005 * 109.47021 * 296.04329 * 1 2 3 25 25 H 1.08993 * 109.47300 * 56.04653 * 1 2 3 26 26 H 1.08997 * 109.47111 * 176.04835 * 1 2 3 27 27 H 1.09001 * 109.46743 * 183.95907 * 3 2 1 28 28 H 1.09005 * 109.46883 * 303.95799 * 3 2 1 29 29 H 1.09000 * 109.47154 * 63.95693 * 3 2 1 30 30 H 1.09006 * 109.47193 * 306.04344 * 4 2 1 31 31 H 1.08994 * 109.46912 * 186.04762 * 4 2 1 32 32 H 1.08996 * 109.47371 * 304.99797 * 5 4 2 33 33 H 1.09004 * 109.46961 * 185.00159 * 5 4 2 34 34 H 0.97008 * 119.99662 * 0.02562 * 7 6 5 35 35 H 1.08009 * 119.95054 * 0.02770 * 11 10 8 36 36 H 1.07993 * 120.05993 * 179.74600 * 12 11 10 37 37 H 0.96994 * 120.00294 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.05494 * 180.02562 * 22 13 12 39 39 H 1.07998 * 119.94660 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2426 0.9703 6 8 2.2956 -2.7696 -0.1801 7 7 2.0248 -4.1376 -0.4252 8 6 2.5886 -4.7577 -1.4807 9 8 3.3302 -4.1423 -2.2222 10 6 2.3067 -6.1842 -1.7360 11 6 1.4490 -6.8895 -0.8832 12 6 1.1897 -8.2081 -1.1118 13 6 1.7776 -8.8583 -2.2149 14 6 1.5073 -10.2215 -2.4593 15 1 1.2089 -10.8671 -1.6466 16 6 1.6263 -10.7380 -3.7576 17 7 1.6409 -9.9292 -4.7836 18 14 1.7635 -12.5823 -4.0202 19 1 0.4167 -13.1450 -4.2934 20 1 2.6566 -12.8527 -5.1755 21 1 2.3264 -13.2154 -2.8005 22 6 2.6359 -8.1430 -3.0732 23 6 2.8933 -6.8261 -2.8334 24 1 -0.3633 0.4512 0.9234 25 1 -0.3633 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0828 1.3432 -0.0710 28 1 1.5897 1.9164 -0.8524 29 1 1.7044 1.8724 0.9233 30 1 1.5612 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1755 32 1 0.5533 -2.3389 0.8433 33 1 1.9439 -2.7963 1.8557 34 1 1.4328 -4.6284 0.1662 35 1 0.9949 -6.3890 -0.0407 36 1 0.5312 -8.7524 -0.4512 37 1 1.7236 -10.2864 -5.6816 38 1 3.0885 -8.6372 -3.9202 39 1 3.5514 -6.2770 -3.4905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328383253.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:08 Heat of formation + Delta-G solvation = -26.367422 kcal Electronic energy + Delta-G solvation = -20642.673400 eV Core-core repulsion = 17358.485770 eV Total energy + Delta-G solvation = -3284.187630 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.65585 -39.28669 -38.68151 -37.38748 -35.70211 -33.59080 -31.88302 -31.31084 -30.17531 -28.51959 -27.55991 -25.14110 -23.92034 -22.77924 -22.18748 -21.35177 -19.50821 -19.14112 -18.20545 -17.28593 -17.06935 -16.43670 -15.94049 -15.90419 -15.81510 -15.72855 -15.05535 -14.85679 -14.63722 -14.20341 -13.98107 -13.68017 -13.49374 -13.27164 -13.22265 -12.80889 -12.75410 -12.67476 -12.64256 -12.35516 -12.20849 -11.79083 -11.77701 -11.36543 -11.10719 -10.83900 -9.87753 -9.57224 -9.41421 -9.27027 -8.78890 -6.48016 0.42354 1.04868 1.16013 1.39481 1.44183 1.56967 2.10877 2.18550 2.78696 2.96075 3.61267 3.69262 3.90525 4.06953 4.14167 4.21128 4.31588 4.38965 4.41784 4.44527 4.53694 4.61929 4.71216 4.80559 4.98431 4.99873 5.01443 5.02142 5.19155 5.24493 5.58672 5.75481 5.88162 5.92812 6.01492 6.05800 6.10046 6.19296 6.55786 6.58615 6.76682 6.88839 7.49292 8.16186 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.047940 B = 0.002867 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.923481 B = 9762.673839 C = 9954.548649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.575 5.575 3 C 0.028 3.972 4 C 0.065 3.935 5 C 0.025 3.975 6 O -0.161 6.161 7 N -0.592 5.592 8 C 0.583 3.417 9 O -0.600 6.600 10 C -0.284 4.284 11 C -0.036 4.036 12 C -0.242 4.242 13 C 0.101 3.899 14 C -0.466 4.466 15 H 0.095 0.905 16 C 0.033 3.967 17 N -0.801 5.801 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.253 1.253 22 C -0.201 4.201 23 C -0.046 4.046 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.418 0.582 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.296 0.704 38 H 0.106 0.894 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.389 10.639 12.012 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.300 5.300 3 C -0.120 4.120 4 C -0.064 4.064 5 C -0.052 4.052 6 O -0.165 6.165 7 N -0.295 5.295 8 C 0.377 3.623 9 O -0.483 6.483 10 C -0.289 4.289 11 C -0.055 4.055 12 C -0.261 4.261 13 C 0.098 3.902 14 C -0.493 4.493 15 H 0.113 0.887 16 C -0.186 4.186 17 N -0.424 5.424 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.193 1.193 21 H -0.176 1.176 22 C -0.221 4.221 23 C -0.065 4.065 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.261 0.739 35 H 0.154 0.846 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.604 11.013 10.711 15.780 hybrid contribution -0.478 -0.272 0.517 0.755 sum -4.082 10.741 11.228 16.066 Atomic orbital electron populations 1.22444 0.86503 1.02246 1.01347 1.61865 1.09061 1.15177 1.43920 1.22370 1.00723 0.87614 1.01285 1.22135 1.01602 0.89893 0.92795 1.23379 0.98167 0.95249 0.88425 1.90665 1.69613 1.07138 1.49114 1.47254 1.51516 1.00197 1.30531 1.18554 0.78600 0.86622 0.78480 1.90641 1.40396 1.67901 1.49329 1.18805 1.14356 0.91044 1.04680 1.20695 0.94213 0.94164 0.96426 1.20947 1.07029 0.95104 1.03015 1.18168 0.87578 0.93617 0.90821 1.20189 1.38982 0.94920 0.95228 0.88654 1.27047 0.90785 1.05893 0.94903 1.69802 1.31311 1.40253 1.01078 0.85082 0.79560 0.75197 0.79333 1.18292 1.19288 1.17591 1.20927 1.03589 0.94075 1.03480 1.20499 0.96702 0.94427 0.94921 0.93837 0.91247 0.91939 0.91652 0.91099 0.94064 0.89531 0.90076 0.91023 0.89613 0.73856 0.84591 0.86065 0.89292 0.87638 0.89056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.33 127.69 1.19 1.58 16 2 N -0.58 -12.37 4.97 -948.84 -4.71 -17.08 16 3 C 0.03 0.47 9.57 127.69 1.22 1.69 16 4 C 0.06 1.18 5.34 86.30 0.46 1.64 16 5 C 0.03 0.53 6.28 71.98 0.45 0.98 16 6 O -0.16 -5.50 11.05 -21.43 -0.24 -5.74 16 7 N -0.59 -20.82 6.34 -175.73 -1.11 -21.94 16 8 C 0.58 26.56 7.91 86.73 0.69 27.25 16 9 O -0.60 -32.56 16.73 13.35 0.22 -32.33 16 10 C -0.28 -13.12 5.89 -19.93 -0.12 -13.23 16 11 C -0.04 -1.45 9.47 22.25 0.21 -1.24 16 12 C -0.24 -10.63 9.73 22.47 0.22 -10.41 16 13 C 0.10 5.15 5.57 -21.28 -0.12 5.03 16 14 C -0.47 -22.85 9.04 23.46 0.21 -22.64 16 15 H 0.10 4.32 7.91 -2.91 -0.02 4.30 16 16 C 0.03 1.52 5.13 85.35 0.44 1.96 16 17 N -0.80 -39.63 10.97 21.87 0.24 -39.39 16 18 Si 0.99 34.68 29.60 68.60 2.03 36.71 16 19 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 20 H -0.27 -9.16 7.11 99.48 0.71 -8.46 16 21 H -0.25 -8.59 7.11 99.48 0.71 -7.89 16 22 C -0.20 -10.63 8.63 22.47 0.19 -10.43 16 23 C -0.05 -2.35 9.52 22.25 0.21 -2.14 16 24 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 25 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 26 H 0.06 1.18 6.37 -2.39 -0.02 1.16 16 27 H 0.06 1.13 8.12 -2.39 -0.02 1.11 16 28 H 0.07 1.14 8.12 -2.38 -0.02 1.12 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.09 1.05 8.12 -2.38 -0.02 1.03 16 31 H 0.08 1.58 8.06 -2.39 -0.02 1.56 16 32 H 0.07 1.34 6.34 -2.39 -0.02 1.32 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.42 11.21 6.54 -92.70 -0.61 10.60 16 35 H 0.14 4.01 6.37 -2.91 -0.02 3.99 16 36 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 37 H 0.30 13.13 8.29 -92.71 -0.77 12.36 16 38 H 0.11 5.78 6.17 -2.91 -0.02 5.76 16 39 H 0.09 4.75 7.63 -2.91 -0.02 4.73 16 Total: -1.00 -68.84 331.07 2.15 -66.69 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.45 Total: 33.04 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.26 Total: -19.96 kcal Atomic # 7 Polarization: -72.82 SS G_CDS: -5.59 Total: -78.41 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.01 Total: -38.07 kcal Atomic # 14 Polarization: 34.68 SS G_CDS: 2.03 Total: 36.71 kcal Total: -68.84 2.15 -66.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328383253.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.322 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds