Wall clock time and date at job start Tue Mar 31 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99706 * 2 1 4 4 H 1.08001 * 119.99790 * 149.07745 * 3 2 1 5 5 C 1.38812 * 120.00249 * 329.34900 * 3 2 1 6 6 N 1.31618 * 119.99757 * 3.21286 * 5 3 2 7 7 Si 1.86800 * 120.00277 * 183.21136 * 5 3 2 8 8 H 1.48502 * 109.46891 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47268 * 120.00321 * 7 5 3 10 10 H 1.48503 * 109.47253 * 240.00344 * 7 5 3 11 11 C 1.46497 * 120.00537 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47010 * 278.40366 * 11 2 1 13 13 H 1.08996 * 109.88133 * 66.02734 * 12 11 2 14 14 C 1.54324 * 109.88352 * 187.20684 * 12 11 2 15 15 C 1.55152 * 102.94273 * 141.60568 * 14 12 11 16 16 C 1.54911 * 101.58329 * 324.49520 * 15 14 12 17 17 N 1.47025 * 109.88056 * 305.00994 * 12 11 2 18 18 C 1.34773 * 125.64716 * 61.60651 * 17 12 11 19 19 O 1.21619 * 120.00282 * 5.67421 * 18 17 12 20 20 C 1.47383 * 120.00221 * 185.67055 * 18 17 12 21 21 C 1.47016 * 127.19245 * 185.80143 * 20 18 17 22 22 C 1.34189 * 105.95323 * 179.83097 * 21 20 18 23 23 O 1.34218 * 109.11972 * 0.43439 * 22 21 20 24 24 C 1.33652 * 110.91120 * 359.70978 * 23 22 21 25 25 H 1.09006 * 109.46736 * 94.52006 * 1 2 3 26 26 H 1.08996 * 109.46928 * 214.52087 * 1 2 3 27 27 H 1.09000 * 109.47014 * 334.52081 * 1 2 3 28 28 H 0.97006 * 120.00012 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46850 * 38.39574 * 11 2 1 30 30 H 1.08997 * 109.47550 * 158.39851 * 11 2 1 31 31 H 1.08997 * 110.71954 * 259.96922 * 14 12 11 32 32 H 1.09002 * 110.72128 * 23.24210 * 14 12 11 33 33 H 1.09005 * 111.00267 * 206.42417 * 15 14 12 34 34 H 1.08999 * 111.00764 * 82.57796 * 15 14 12 35 35 H 1.09001 * 110.36433 * 278.17096 * 16 15 14 36 36 H 1.09000 * 110.45350 * 155.89650 * 16 15 14 37 37 H 1.08004 * 127.02562 * 359.97438 * 21 20 18 38 38 H 1.07993 * 125.43933 * 180.14278 * 22 21 20 39 39 H 1.07993 * 125.80131 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1145 1.2524 0.4806 5 6 1.6010 2.3041 -0.6128 6 7 0.3960 2.2417 -1.1385 7 14 2.5729 3.8975 -0.6915 8 1 3.8898 3.7070 -0.0320 9 1 2.7804 4.2812 -2.1109 10 1 1.8209 4.9710 0.0067 11 6 2.1976 -1.2686 0.0006 12 6 2.2701 -1.8150 1.4278 13 1 1.2714 -2.0809 1.7741 14 6 3.1905 -3.0531 1.4698 15 6 3.9394 -2.8837 2.8180 16 6 4.1037 -1.3451 2.8914 17 7 2.8564 -0.8049 2.3208 18 6 2.3397 0.4137 2.5748 19 8 1.2502 0.7175 2.1278 20 6 3.0948 1.3781 3.3944 21 6 2.6378 2.6935 3.8658 22 6 3.6559 3.2058 4.5740 23 8 4.6781 2.3360 4.5665 24 6 4.3662 1.2393 3.8693 25 1 -0.3633 -0.0810 -1.0245 26 1 -0.3633 -0.8467 0.5824 27 1 -0.3633 0.9277 0.4421 28 1 0.0124 3.0232 -1.5665 29 1 1.6818 -1.9863 -0.6374 30 1 3.2067 -1.1057 -0.3778 31 1 2.6026 -3.9709 1.4679 32 1 3.8914 -3.0410 0.6351 33 1 4.9099 -3.3794 2.7907 34 1 3.3374 -3.2526 3.6484 35 1 4.9613 -1.0265 2.2989 36 1 4.2180 -1.0232 3.9265 37 1 1.6777 3.1527 3.6818 38 1 3.6549 4.1667 5.0669 39 1 5.0110 0.3880 3.7088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328702825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:20 Heat of formation + Delta-G solvation = 51.207848 kcal Electronic energy + Delta-G solvation = -23428.094004 eV Core-core repulsion = 20147.270291 eV Total energy + Delta-G solvation = -3280.823714 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.12462 -39.42789 -36.51566 -34.96623 -32.47070 -31.38159 -31.08680 -29.45815 -28.67402 -25.63176 -25.13759 -23.76245 -21.92136 -21.13863 -20.63960 -20.23834 -18.70097 -16.97852 -16.79900 -15.96675 -15.81180 -15.63314 -14.76127 -14.58495 -13.81070 -13.58061 -13.33620 -13.06899 -12.88766 -12.80061 -12.49511 -11.95397 -11.91794 -11.84408 -11.43651 -11.15360 -10.97602 -10.71629 -10.63957 -10.48450 -10.29244 -9.86053 -9.71409 -9.62499 -9.27721 -8.75644 -8.43148 -8.28115 -7.76652 -6.12746 -5.47112 -2.91388 1.86445 2.56064 3.24343 3.47823 3.54451 3.56061 3.69246 4.33199 4.66736 4.75939 4.82021 4.98766 5.09552 5.24585 5.40682 5.51527 5.58180 5.68365 5.73465 5.83817 5.90806 5.98022 6.08812 6.12101 6.19391 6.25280 6.33423 6.41760 6.61212 6.70266 6.93342 7.20344 7.22970 7.31765 7.81528 7.96955 8.18564 8.42303 8.75676 9.37216 9.54636 10.16627 10.69050 11.59098 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.010857 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.601437 B = 2578.327400 C = 4136.710077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.584 5.584 3 C -0.207 4.207 4 H 0.052 0.948 5 C 0.006 3.994 6 N -0.907 5.907 7 Si 0.888 3.112 8 H -0.281 1.281 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.142 3.858 12 C 0.117 3.883 13 H 0.061 0.939 14 C -0.126 4.126 15 C -0.130 4.130 16 C 0.091 3.909 17 N -0.612 5.612 18 C 0.579 3.421 19 O -0.440 6.440 20 C -0.195 4.195 21 C -0.160 4.160 22 C -0.056 4.056 23 O -0.184 6.184 24 C -0.025 4.025 25 H 0.000 1.000 26 H -0.022 1.022 27 H 0.067 0.933 28 H 0.246 0.754 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.156 0.844 38 H 0.202 0.798 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.799 -7.557 11.162 16.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.305 5.305 3 C -0.338 4.338 4 H 0.069 0.931 5 C -0.191 4.191 6 N -0.553 5.553 7 Si 0.720 3.280 8 H -0.207 1.207 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.013 3.987 12 C 0.011 3.989 13 H 0.079 0.921 14 C -0.165 4.165 15 C -0.169 4.169 16 C -0.033 4.033 17 N -0.351 5.351 18 C 0.366 3.634 19 O -0.309 6.309 20 C -0.200 4.200 21 C -0.180 4.180 22 C -0.122 4.122 23 O -0.081 6.081 24 C -0.094 4.094 25 H 0.018 0.982 26 H -0.004 1.004 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.174 0.826 38 H 0.219 0.781 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 8.248 -7.049 10.959 15.421 hybrid contribution 0.456 1.036 -0.195 1.149 sum 8.704 -6.012 10.764 15.092 Atomic orbital electron populations 1.20567 0.82593 0.97487 0.95222 1.43634 1.01794 0.99756 1.85317 1.18840 1.00705 0.87923 1.26284 0.93073 1.25026 0.96878 0.98234 0.98918 1.70046 1.14746 1.28309 1.42243 0.86392 0.79742 0.84910 0.76998 1.20680 1.22009 1.21946 1.21098 0.96432 0.89469 0.91707 1.22439 0.95684 0.86502 0.94261 0.92061 1.22660 0.98768 0.97779 0.97300 1.22722 1.00781 0.95047 0.98312 1.22453 0.88897 0.93996 0.97973 1.47988 1.24253 1.15204 1.47636 1.16451 0.86453 0.79567 0.80927 1.90947 1.19674 1.74775 1.45492 1.21813 0.95497 0.97703 1.04964 1.22822 1.01050 0.94228 0.99851 1.23800 0.86549 0.96175 1.05695 1.83724 1.40264 1.25117 1.58972 1.25030 0.97040 0.90305 0.96992 0.98157 1.00393 0.91444 0.94332 0.94586 0.93322 0.90806 0.90700 0.90516 0.91011 0.92122 0.91171 0.82612 0.78124 0.77135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 5.10 7.53 59.85 0.45 5.55 16 2 N -0.58 -15.48 1.69 -181.12 -0.31 -15.78 16 3 C -0.21 -5.94 6.16 -15.06 -0.09 -6.03 16 4 H 0.05 1.49 6.74 -52.49 -0.35 1.13 16 5 C 0.01 0.19 5.32 -17.43 -0.09 0.10 16 6 N -0.91 -28.24 10.50 55.49 0.58 -27.65 16 7 Si 0.89 23.45 29.56 -169.99 -5.02 18.43 16 8 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 9 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 10 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 11 C 0.14 3.03 5.34 -4.04 -0.02 3.01 16 12 C 0.12 2.08 3.31 -66.95 -0.22 1.86 16 13 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 14 C -0.13 -1.57 6.48 -24.90 -0.16 -1.73 16 15 C -0.13 -1.37 7.08 -24.58 -0.17 -1.54 16 16 C 0.09 1.16 5.14 -2.53 -0.01 1.15 16 17 N -0.61 -11.10 3.06 -164.29 -0.50 -11.60 16 18 C 0.58 12.56 5.18 -12.54 -0.06 12.49 16 19 O -0.44 -11.52 11.05 5.26 0.06 -11.46 16 20 C -0.20 -3.72 6.24 -103.28 -0.64 -4.37 16 21 C -0.16 -2.88 11.02 -37.45 -0.41 -3.29 16 22 C -0.06 -0.81 12.03 29.31 0.35 -0.46 16 23 O -0.18 -2.75 10.52 7.65 0.08 -2.67 16 24 C -0.03 -0.38 10.46 30.08 0.31 -0.07 16 25 H 0.00 0.01 7.83 -51.93 -0.41 -0.40 16 26 H -0.02 -0.57 7.99 -51.93 -0.41 -0.99 16 27 H 0.07 2.07 6.14 -51.93 -0.32 1.75 16 28 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.04 0.73 8.13 -51.93 -0.42 0.31 16 30 H 0.05 1.04 7.85 -51.93 -0.41 0.63 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.90 7.77 -51.93 -0.40 0.49 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.74 7.79 -51.93 -0.40 0.33 16 36 H 0.07 0.79 5.91 -51.93 -0.31 0.48 16 37 H 0.16 2.87 8.06 -52.48 -0.42 2.45 16 38 H 0.20 2.02 8.06 -52.49 -0.42 1.59 16 39 H 0.21 2.48 4.82 -52.49 -0.25 2.23 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -35.60 306.86 -6.63 -42.23 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -5.36 Total: -2.78 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.78 Total: 6.66 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.23 Total: -55.04 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.14 Total: -14.13 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.60 -6.63 -42.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328702825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.438 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds