Wall clock time and date at job start Tue Mar 31 2020 01:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36938 * 119.99706 * 2 1 4 4 H 1.08001 * 119.99790 * 149.07745 * 3 2 1 5 5 C 1.38812 * 120.00249 * 329.34900 * 3 2 1 6 6 N 1.31618 * 119.99757 * 3.21286 * 5 3 2 7 7 Si 1.86800 * 120.00277 * 183.21136 * 5 3 2 8 8 H 1.48502 * 109.46891 * 359.97438 * 7 5 3 9 9 H 1.48494 * 109.47268 * 120.00321 * 7 5 3 10 10 H 1.48503 * 109.47253 * 240.00344 * 7 5 3 11 11 C 1.46497 * 120.00537 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47010 * 278.40366 * 11 2 1 13 13 H 1.08996 * 109.88133 * 66.02734 * 12 11 2 14 14 C 1.54324 * 109.88352 * 187.20684 * 12 11 2 15 15 C 1.55152 * 102.94273 * 141.60568 * 14 12 11 16 16 C 1.54911 * 101.58329 * 324.49520 * 15 14 12 17 17 N 1.47025 * 109.88056 * 305.00994 * 12 11 2 18 18 C 1.34773 * 125.64716 * 61.60651 * 17 12 11 19 19 O 1.21619 * 120.00282 * 5.67421 * 18 17 12 20 20 C 1.47383 * 120.00221 * 185.67055 * 18 17 12 21 21 C 1.47016 * 127.19245 * 185.80143 * 20 18 17 22 22 C 1.34189 * 105.95323 * 179.83097 * 21 20 18 23 23 O 1.34218 * 109.11972 * 0.43439 * 22 21 20 24 24 C 1.33652 * 110.91120 * 359.70978 * 23 22 21 25 25 H 1.09006 * 109.46736 * 94.52006 * 1 2 3 26 26 H 1.08996 * 109.46928 * 214.52087 * 1 2 3 27 27 H 1.09000 * 109.47014 * 334.52081 * 1 2 3 28 28 H 0.97006 * 120.00012 * 179.97438 * 6 5 3 29 29 H 1.09003 * 109.46850 * 38.39574 * 11 2 1 30 30 H 1.08997 * 109.47550 * 158.39851 * 11 2 1 31 31 H 1.08997 * 110.71954 * 259.96922 * 14 12 11 32 32 H 1.09002 * 110.72128 * 23.24210 * 14 12 11 33 33 H 1.09005 * 111.00267 * 206.42417 * 15 14 12 34 34 H 1.08999 * 111.00764 * 82.57796 * 15 14 12 35 35 H 1.09001 * 110.36433 * 278.17096 * 16 15 14 36 36 H 1.09000 * 110.45350 * 155.89650 * 16 15 14 37 37 H 1.08004 * 127.02562 * 359.97438 * 21 20 18 38 38 H 1.07993 * 125.43933 * 180.14278 * 22 21 20 39 39 H 1.07993 * 125.80131 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1145 1.2524 0.4806 5 6 1.6010 2.3041 -0.6128 6 7 0.3960 2.2417 -1.1385 7 14 2.5729 3.8975 -0.6915 8 1 3.8898 3.7070 -0.0320 9 1 2.7804 4.2812 -2.1109 10 1 1.8209 4.9710 0.0067 11 6 2.1976 -1.2686 0.0006 12 6 2.2701 -1.8150 1.4278 13 1 1.2714 -2.0809 1.7741 14 6 3.1905 -3.0531 1.4698 15 6 3.9394 -2.8837 2.8180 16 6 4.1037 -1.3451 2.8914 17 7 2.8564 -0.8049 2.3208 18 6 2.3397 0.4137 2.5748 19 8 1.2502 0.7175 2.1278 20 6 3.0948 1.3781 3.3944 21 6 2.6378 2.6935 3.8658 22 6 3.6559 3.2058 4.5740 23 8 4.6781 2.3360 4.5665 24 6 4.3662 1.2393 3.8693 25 1 -0.3633 -0.0810 -1.0245 26 1 -0.3633 -0.8467 0.5824 27 1 -0.3633 0.9277 0.4421 28 1 0.0124 3.0232 -1.5665 29 1 1.6818 -1.9863 -0.6374 30 1 3.2067 -1.1057 -0.3778 31 1 2.6026 -3.9709 1.4679 32 1 3.8914 -3.0410 0.6351 33 1 4.9099 -3.3794 2.7907 34 1 3.3374 -3.2526 3.6484 35 1 4.9613 -1.0265 2.2989 36 1 4.2180 -1.0232 3.9265 37 1 1.6777 3.1527 3.6818 38 1 3.6549 4.1667 5.0669 39 1 5.0110 0.3880 3.7088 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328702825.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:19 Heat of formation + Delta-G solvation = 26.926609 kcal Electronic energy + Delta-G solvation = -23429.146918 eV Core-core repulsion = 20147.270291 eV Total energy + Delta-G solvation = -3281.876627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.37537 -40.86299 -37.98738 -36.95197 -33.93460 -33.21993 -32.39563 -30.90637 -30.08890 -27.86605 -26.68762 -25.27189 -23.41581 -22.47708 -21.96639 -21.65024 -20.11251 -18.82865 -18.26053 -17.36243 -17.15998 -16.87243 -16.84124 -16.09136 -15.51977 -15.15920 -14.91336 -14.58017 -14.31128 -14.15944 -13.77672 -13.62420 -13.35315 -13.31222 -13.04284 -12.97918 -12.80951 -12.35281 -12.30717 -11.95582 -11.91952 -11.71969 -11.64490 -11.48729 -10.70580 -10.44574 -10.42465 -9.65468 -9.42093 -8.20414 -7.69089 -5.15449 0.58938 1.23645 1.35543 1.37340 1.45807 2.04467 2.36617 2.54018 2.80777 3.47422 3.64329 3.77635 3.83848 3.88282 4.09916 4.17215 4.22528 4.38006 4.53512 4.58200 4.69035 4.75829 4.81649 4.87148 4.98073 5.02968 5.04604 5.13136 5.20657 5.26692 5.36656 5.48320 5.53823 5.65987 5.78213 5.94148 6.06569 6.51406 6.96872 7.31465 7.81190 8.03233 8.51513 9.36191 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.012926 B = 0.010857 C = 0.006767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.601437 B = 2578.327400 C = 4136.710077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.213 3.787 2 N -0.597 5.597 3 C -0.182 4.182 4 H 0.048 0.952 5 C -0.060 4.060 6 N -0.946 5.946 7 Si 0.947 3.053 8 H -0.270 1.270 9 H -0.292 1.292 10 H -0.300 1.300 11 C 0.137 3.863 12 C 0.118 3.882 13 H 0.037 0.963 14 C -0.115 4.115 15 C -0.115 4.115 16 C 0.078 3.922 17 N -0.616 5.616 18 C 0.573 3.427 19 O -0.511 6.511 20 C -0.244 4.244 21 C -0.209 4.209 22 C -0.024 4.024 23 O -0.176 6.176 24 C 0.008 3.992 25 H -0.023 1.023 26 H -0.009 1.009 27 H 0.028 0.972 28 H 0.238 0.762 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.115 0.885 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.133 0.867 38 H 0.248 0.752 39 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.739 -9.125 13.041 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.319 5.319 3 C -0.313 4.313 4 H 0.065 0.935 5 C -0.252 4.252 6 N -0.595 5.595 7 Si 0.777 3.223 8 H -0.195 1.195 9 H -0.219 1.219 10 H -0.227 1.227 11 C 0.010 3.990 12 C 0.012 3.988 13 H 0.055 0.945 14 C -0.154 4.154 15 C -0.153 4.153 16 C -0.044 4.044 17 N -0.353 5.353 18 C 0.361 3.639 19 O -0.385 6.385 20 C -0.249 4.249 21 C -0.229 4.229 22 C -0.089 4.089 23 O -0.071 6.071 24 C -0.061 4.061 25 H -0.005 1.005 26 H 0.010 0.990 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.151 0.849 38 H 0.264 0.736 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 12.279 -8.686 12.874 19.798 hybrid contribution -0.711 1.415 -0.627 1.703 sum 11.567 -7.271 12.247 18.348 Atomic orbital electron populations 1.20079 0.83919 0.95888 0.93379 1.43787 1.01381 1.01242 1.85465 1.18897 0.99879 0.88766 1.23783 0.93480 1.25691 0.97947 1.01382 1.00217 1.70221 1.16318 1.28545 1.44447 0.85455 0.78725 0.81394 0.76716 1.19473 1.21905 1.22734 1.21366 0.95741 0.87385 0.94466 1.22289 0.96499 0.88606 0.91412 0.94465 1.22634 0.98166 0.95368 0.99222 1.22739 1.02536 0.93111 0.96918 1.22861 0.86737 0.95791 0.99013 1.48133 1.25805 1.14249 1.47093 1.17033 0.85950 0.80698 0.80181 1.90921 1.22405 1.76446 1.48711 1.21823 0.97517 0.98229 1.07327 1.22881 1.01843 0.95239 1.02903 1.24472 0.84674 0.96694 1.03095 1.83789 1.39995 1.24973 1.58326 1.25547 0.95546 0.90659 0.94316 1.00453 0.99044 0.95360 0.95247 0.93724 0.93104 0.88803 0.89570 0.86623 0.90437 0.90536 0.89179 0.84873 0.73639 0.73496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.21 12.37 7.53 127.77 0.96 13.34 16 2 N -0.60 -32.66 1.69 -726.94 -1.23 -33.89 16 3 C -0.18 -10.72 6.16 84.03 0.52 -10.20 16 4 H 0.05 2.77 6.74 -2.91 -0.02 2.75 16 5 C -0.06 -3.71 5.32 84.86 0.45 -3.26 16 6 N -0.95 -62.05 10.50 21.65 0.23 -61.82 16 7 Si 0.95 49.86 29.56 68.60 2.03 51.88 16 8 H -0.27 -13.48 7.11 99.48 0.71 -12.77 16 9 H -0.29 -15.14 7.11 99.48 0.71 -14.43 16 10 H -0.30 -15.94 7.11 99.48 0.71 -15.23 16 11 C 0.14 5.82 5.34 86.38 0.46 6.28 16 12 C 0.12 4.04 3.31 45.34 0.15 4.19 16 13 H 0.04 1.45 8.03 -2.39 -0.02 1.43 16 14 C -0.12 -2.41 6.48 31.78 0.21 -2.20 16 15 C -0.12 -1.79 7.08 31.99 0.23 -1.57 16 16 C 0.08 1.66 5.14 86.86 0.45 2.10 16 17 N -0.62 -21.49 3.06 -791.94 -2.43 -23.91 16 18 C 0.57 25.19 5.18 86.65 0.45 25.64 16 19 O -0.51 -28.22 11.05 -4.09 -0.05 -28.26 16 20 C -0.24 -9.18 6.24 -18.99 -0.12 -9.30 16 21 C -0.21 -7.58 11.02 23.65 0.26 -7.32 16 22 C -0.02 -0.62 12.03 66.90 0.80 0.18 16 23 O -0.18 -4.54 10.52 4.45 0.05 -4.49 16 24 C 0.01 0.22 10.46 67.40 0.70 0.93 16 25 H -0.02 -1.40 7.83 -2.38 -0.02 -1.42 16 26 H -0.01 -0.47 7.99 -2.39 -0.02 -0.49 16 27 H 0.03 1.84 6.14 -2.39 -0.01 1.82 16 28 H 0.24 15.26 8.31 -92.70 -0.77 14.49 16 29 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.05 2.11 7.85 -2.39 -0.02 2.09 16 31 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.09 1.66 7.77 -2.39 -0.02 1.64 16 33 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.45 7.79 -2.39 -0.02 1.43 16 36 H 0.09 1.58 5.91 -2.39 -0.01 1.56 16 37 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 38 H 0.25 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.25 4.55 4.82 -2.91 -0.01 4.53 16 Total: -1.00 -84.68 306.86 5.18 -79.50 By element: Atomic # 1 Polarization: 1.13 SS G_CDS: 1.05 Total: 2.18 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: 5.52 Total: 18.81 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -3.42 Total: -119.62 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: 0.00 Total: -32.76 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.03 Total: 51.88 kcal Total: -84.68 5.18 -79.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328702825.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.430 kcal (2) G-P(sol) polarization free energy of solvation -84.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds