Wall clock time and date at job start Tue Mar 31 2020 01:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35912 * 119.45389 * 2 1 4 4 C 1.34993 * 120.89544 * 180.27430 * 3 2 1 5 5 C 1.41041 * 119.79570 * 359.73272 * 4 3 2 6 6 N 1.38852 * 120.52321 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99716 * 302.59921 * 6 5 4 8 8 O 1.21262 * 120.00460 * 4.96010 * 7 6 5 9 9 C 1.50701 * 119.99800 * 184.95548 * 7 6 5 10 10 C 1.53003 * 109.47201 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47316 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47291 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47177 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99850 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47313 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47213 * 119.99906 * 17 15 13 20 20 H 1.48508 * 109.47278 * 239.99854 * 17 15 13 21 21 C 1.38387 * 118.94972 * 359.97438 * 5 4 3 22 22 C 1.34591 * 119.44596 * 179.72004 * 2 1 3 23 23 O 1.22119 * 119.92788 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47168 * 270.27743 * 1 2 3 25 25 H 1.09001 * 109.46499 * 30.27754 * 1 2 3 26 26 H 1.08995 * 109.47185 * 150.27380 * 1 2 3 27 27 H 1.07999 * 119.55229 * 359.97438 * 3 2 1 28 28 H 1.08008 * 120.10685 * 179.70210 * 4 3 2 29 29 H 0.96999 * 120.00094 * 122.60703 * 6 5 4 30 30 H 1.08996 * 109.47695 * 300.00208 * 9 7 6 31 31 H 1.09003 * 109.47174 * 60.00677 * 9 7 6 32 32 H 1.08997 * 109.47517 * 300.00596 * 10 9 7 33 33 H 1.09006 * 109.46955 * 60.00414 * 10 9 7 34 34 H 1.09005 * 109.46979 * 300.00373 * 11 10 9 35 35 H 1.08995 * 109.47365 * 60.00311 * 11 10 9 36 36 H 1.08997 * 109.47206 * 300.00218 * 12 11 10 37 37 H 1.09003 * 109.46799 * 59.99928 * 12 11 10 38 38 H 0.96999 * 119.99608 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.44693 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1333 1.1835 0.0000 4 6 3.4828 1.2174 -0.0055 5 6 4.2142 0.0115 -0.0057 6 7 5.6026 0.0288 -0.0119 7 6 6.2642 0.6635 -0.9998 8 8 5.6497 1.2950 -1.8329 9 6 7.7677 0.5884 -1.0691 10 6 8.2633 1.3884 -2.2756 11 6 9.7897 1.3117 -2.3463 12 6 10.2853 2.1121 -3.5524 13 6 11.7888 2.0371 -3.6216 14 1 12.3361 1.4743 -2.8799 15 6 12.4656 2.6859 -4.6326 16 7 11.7990 3.3700 -5.5367 17 14 14.3292 2.5923 -4.7189 18 1 14.8359 1.7656 -3.5941 19 1 14.7347 1.9757 -6.0075 20 1 14.8986 3.9606 -4.6240 21 6 3.5262 -1.1892 0.0004 22 6 2.1267 -1.1720 0.0057 23 8 1.5046 -2.2229 0.0104 24 1 -0.3633 0.0050 1.0277 25 1 -0.3632 0.8875 -0.5182 26 1 -0.3633 -0.8924 -0.5095 27 1 1.5772 2.1093 -0.0004 28 1 4.0009 2.1651 -0.0103 29 1 6.0964 -0.4160 0.6947 30 1 8.1948 1.0044 -0.1567 31 1 8.0752 -0.4522 -1.1727 32 1 7.8363 0.9721 -3.1879 33 1 7.9559 2.4291 -2.1725 34 1 10.2171 1.7278 -1.4339 35 1 10.0968 0.2710 -2.4495 36 1 9.8579 1.6964 -4.4648 37 1 9.9782 3.1529 -3.4487 38 1 12.2751 3.8261 -6.2481 39 1 4.0620 -2.1270 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331816911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:12 Heat of formation + Delta-G solvation = -54.801171 kcal Electronic energy + Delta-G solvation = -20262.553321 eV Core-core repulsion = 16977.132711 eV Total energy + Delta-G solvation = -3285.420610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.66771 -40.07475 -37.20644 -36.12008 -34.91815 -33.09940 -32.54612 -30.25063 -29.79574 -27.60761 -25.77407 -24.13356 -23.40166 -21.91493 -20.55674 -20.03906 -18.16118 -17.84162 -17.39716 -16.91468 -16.24523 -16.17160 -15.71975 -15.50395 -14.51196 -14.48848 -14.09648 -14.04715 -13.56955 -13.41781 -13.04908 -12.66973 -12.48284 -12.21795 -12.02518 -11.76985 -11.64502 -11.02383 -10.76128 -10.59603 -10.51625 -10.46286 -10.45162 -10.01561 -9.65305 -9.34767 -9.25987 -9.00078 -8.32514 -8.28151 -5.97124 -3.99613 0.40160 1.54732 2.32896 2.45753 2.79523 3.32072 3.33206 3.39441 3.43202 4.18291 4.34850 4.47396 4.63463 4.81303 4.83413 4.87456 5.00469 5.18087 5.22234 5.24874 5.26890 5.38477 5.69623 5.74094 5.90064 5.93101 6.07023 6.22507 6.38301 6.49719 6.74896 6.78327 6.95354 7.05970 7.17390 7.72147 7.75455 7.87171 7.96562 8.04118 8.45773 9.08320 9.64279 11.14226 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.052346 B = 0.002345 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.771023 B =11937.821208 C =12152.445527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.503 5.503 3 C 0.139 3.861 4 C -0.214 4.214 5 C 0.254 3.746 6 N -0.692 5.692 7 C 0.517 3.483 8 O -0.511 6.511 9 C -0.137 4.137 10 C -0.105 4.105 11 C -0.110 4.110 12 C 0.019 3.981 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.270 4.270 22 C 0.523 3.477 23 O -0.558 6.558 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.167 0.833 28 H 0.150 0.850 29 H 0.416 0.584 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.632 -4.660 15.793 26.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.215 5.215 3 C 0.012 3.988 4 C -0.239 4.239 5 C 0.156 3.844 6 N -0.343 5.343 7 C 0.306 3.694 8 O -0.383 6.383 9 C -0.177 4.177 10 C -0.143 4.143 11 C -0.148 4.148 12 C -0.018 4.018 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.294 4.294 22 C 0.325 3.675 23 O -0.442 6.442 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.185 0.815 28 H 0.167 0.833 29 H 0.253 0.747 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.434 -4.766 14.987 26.585 hybrid contribution 1.357 -0.098 0.217 1.378 sum -20.077 -4.864 15.205 25.650 Atomic orbital electron populations 1.22154 0.77202 1.05071 1.03806 1.45447 1.09370 1.06779 1.59879 1.21751 0.93316 0.89427 0.94295 1.20756 0.92489 0.99065 1.11588 1.18139 0.83893 0.92885 0.89489 1.43612 1.04055 1.57585 1.29004 1.21396 0.91251 0.77132 0.79646 1.90750 1.69773 1.39130 1.38687 1.21839 0.88877 1.03962 1.02994 1.21486 0.97622 0.99703 0.95448 1.21650 0.91665 1.00569 1.00915 1.19104 0.95532 0.95058 0.92100 1.21314 0.92255 1.31162 1.11073 0.92681 1.25048 0.98341 0.95464 0.95779 1.69984 1.35300 1.33347 1.14828 0.86555 0.85929 0.77722 0.77886 1.19772 1.21051 1.21050 1.22318 0.92837 0.98707 1.15573 1.16617 0.88656 0.82737 0.79450 1.90974 1.69422 1.29760 1.54048 0.90621 0.89639 0.88757 0.81546 0.83268 0.74651 0.88580 0.88553 0.91670 0.91652 0.93379 0.93374 0.96568 0.96577 0.93086 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 10.34 59.85 0.62 0.95 16 2 N -0.50 -4.39 2.99 -127.45 -0.38 -4.77 16 3 C 0.14 0.96 10.26 -16.90 -0.17 0.79 16 4 C -0.21 -1.94 8.84 -39.67 -0.35 -2.29 16 5 C 0.25 2.60 5.83 -83.56 -0.49 2.11 16 6 N -0.69 -6.35 5.26 -9.71 -0.05 -6.40 16 7 C 0.52 6.40 7.68 -10.98 -0.08 6.31 16 8 O -0.51 -8.40 15.05 5.57 0.08 -8.31 16 9 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 10 C -0.10 -1.74 4.50 -26.73 -0.12 -1.87 16 11 C -0.11 -2.18 5.15 -26.73 -0.14 -2.32 16 12 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 13 C -0.52 -14.78 9.11 -34.44 -0.31 -15.09 16 14 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 17 Si 0.89 21.72 29.54 -169.99 -5.02 16.69 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 21 C -0.27 -2.99 9.96 -38.88 -0.39 -3.38 16 22 C 0.52 6.39 7.39 -15.69 -0.12 6.27 16 23 O -0.56 -8.67 16.61 4.81 0.08 -8.59 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.08 0.23 8.01 -51.93 -0.42 -0.19 16 26 H 0.09 0.67 7.37 -51.93 -0.38 0.29 16 27 H 0.17 0.48 8.03 -52.49 -0.42 0.06 16 28 H 0.15 1.32 7.91 -52.48 -0.42 0.90 16 29 H 0.42 2.40 8.82 -40.82 -0.36 2.04 16 30 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 336.70 15.07 5.07 5.07 Total: -1.00 -37.20 336.70 -7.18 -44.38 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -5.76 Total: -3.12 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.95 Total: -8.41 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.30 Total: -37.72 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.16 Total: -16.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -37.20 -7.18 -44.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331816911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.420 kcal (2) G-P(sol) polarization free energy of solvation -37.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds