Wall clock time and date at job start Tue Mar 31 2020 01:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35912 * 119.45389 * 2 1 4 4 C 1.34993 * 120.89544 * 180.27430 * 3 2 1 5 5 C 1.41041 * 119.79570 * 359.73272 * 4 3 2 6 6 N 1.38852 * 120.52321 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99716 * 302.59921 * 6 5 4 8 8 O 1.21262 * 120.00460 * 4.96010 * 7 6 5 9 9 C 1.50701 * 119.99800 * 184.95548 * 7 6 5 10 10 C 1.53003 * 109.47201 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47316 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47291 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.47177 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99782 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99850 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00175 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47313 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47213 * 119.99906 * 17 15 13 20 20 H 1.48508 * 109.47278 * 239.99854 * 17 15 13 21 21 C 1.38387 * 118.94972 * 359.97438 * 5 4 3 22 22 C 1.34591 * 119.44596 * 179.72004 * 2 1 3 23 23 O 1.22119 * 119.92788 * 0.02562 * 22 2 1 24 24 H 1.09001 * 109.47168 * 270.27743 * 1 2 3 25 25 H 1.09001 * 109.46499 * 30.27754 * 1 2 3 26 26 H 1.08995 * 109.47185 * 150.27380 * 1 2 3 27 27 H 1.07999 * 119.55229 * 359.97438 * 3 2 1 28 28 H 1.08008 * 120.10685 * 179.70210 * 4 3 2 29 29 H 0.96999 * 120.00094 * 122.60703 * 6 5 4 30 30 H 1.08996 * 109.47695 * 300.00208 * 9 7 6 31 31 H 1.09003 * 109.47174 * 60.00677 * 9 7 6 32 32 H 1.08997 * 109.47517 * 300.00596 * 10 9 7 33 33 H 1.09006 * 109.46955 * 60.00414 * 10 9 7 34 34 H 1.09005 * 109.46979 * 300.00373 * 11 10 9 35 35 H 1.08995 * 109.47365 * 60.00311 * 11 10 9 36 36 H 1.08997 * 109.47206 * 300.00218 * 12 11 10 37 37 H 1.09003 * 109.46799 * 59.99928 * 12 11 10 38 38 H 0.96999 * 119.99608 * 180.02562 * 16 15 13 39 39 H 1.07999 * 120.44693 * 180.02562 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1333 1.1835 0.0000 4 6 3.4828 1.2174 -0.0055 5 6 4.2142 0.0115 -0.0057 6 7 5.6026 0.0288 -0.0119 7 6 6.2642 0.6635 -0.9998 8 8 5.6497 1.2950 -1.8329 9 6 7.7677 0.5884 -1.0691 10 6 8.2633 1.3884 -2.2756 11 6 9.7897 1.3117 -2.3463 12 6 10.2853 2.1121 -3.5524 13 6 11.7888 2.0371 -3.6216 14 1 12.3361 1.4743 -2.8799 15 6 12.4656 2.6859 -4.6326 16 7 11.7990 3.3700 -5.5367 17 14 14.3292 2.5923 -4.7189 18 1 14.8359 1.7656 -3.5941 19 1 14.7347 1.9757 -6.0075 20 1 14.8986 3.9606 -4.6240 21 6 3.5262 -1.1892 0.0004 22 6 2.1267 -1.1720 0.0057 23 8 1.5046 -2.2229 0.0104 24 1 -0.3633 0.0050 1.0277 25 1 -0.3632 0.8875 -0.5182 26 1 -0.3633 -0.8924 -0.5095 27 1 1.5772 2.1093 -0.0004 28 1 4.0009 2.1651 -0.0103 29 1 6.0964 -0.4160 0.6947 30 1 8.1948 1.0044 -0.1567 31 1 8.0752 -0.4522 -1.1727 32 1 7.8363 0.9721 -3.1879 33 1 7.9559 2.4291 -2.1725 34 1 10.2171 1.7278 -1.4339 35 1 10.0968 0.2710 -2.4495 36 1 9.8579 1.6964 -4.4648 37 1 9.9782 3.1529 -3.4487 38 1 12.2751 3.8261 -6.2481 39 1 4.0620 -2.1270 0.0008 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331816911.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:11 Heat of formation + Delta-G solvation = -80.458542 kcal Electronic energy + Delta-G solvation = -20263.665908 eV Core-core repulsion = 16977.132711 eV Total energy + Delta-G solvation = -3286.533197 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.44904 -41.03349 -38.12087 -37.04621 -36.47639 -34.62881 -33.75427 -31.48403 -30.93655 -28.43567 -27.30210 -24.97904 -24.63076 -23.19339 -21.77091 -21.42043 -18.99178 -18.62545 -18.39314 -18.09072 -17.83956 -16.97899 -16.81939 -16.50956 -16.33944 -15.51332 -15.19315 -15.11232 -14.54559 -14.25027 -14.11887 -13.87506 -13.59317 -13.51594 -13.28590 -13.05622 -12.84081 -12.72946 -12.31070 -12.13928 -12.12196 -11.53952 -11.43636 -11.34003 -11.31972 -11.14458 -10.84244 -10.54276 -10.13782 -9.06931 -8.17841 -6.29401 -0.33921 0.76780 1.41461 1.42028 1.49135 1.55418 1.68288 1.96482 2.42771 2.55545 3.15200 3.60925 3.75610 3.80285 4.03828 4.11984 4.16360 4.20219 4.41575 4.45631 4.50431 4.68024 4.71003 4.79775 4.87118 4.89942 4.98898 5.15979 5.22032 5.24722 5.35608 5.41353 5.59045 5.63224 5.81146 5.90691 6.00388 6.26844 6.30302 6.89747 6.91569 7.07723 7.40238 8.94501 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.052346 B = 0.002345 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.771023 B =11937.821208 C =12152.445527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.499 5.499 3 C 0.164 3.836 4 C -0.238 4.238 5 C 0.256 3.744 6 N -0.674 5.674 7 C 0.521 3.479 8 O -0.558 6.558 9 C -0.126 4.126 10 C -0.097 4.097 11 C -0.097 4.097 12 C 0.017 3.983 13 C -0.539 4.539 14 H 0.066 0.934 15 C -0.008 4.008 16 N -0.938 5.938 17 Si 0.968 3.032 18 H -0.257 1.257 19 H -0.281 1.281 20 H -0.279 1.279 21 C -0.294 4.294 22 C 0.508 3.492 23 O -0.607 6.607 24 H 0.092 0.908 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.218 0.782 28 H 0.153 0.847 29 H 0.433 0.567 30 H 0.129 0.871 31 H 0.122 0.878 32 H 0.042 0.958 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.059 0.941 36 H -0.016 1.016 37 H -0.013 1.013 38 H 0.262 0.738 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.257 -4.321 17.669 27.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.208 5.208 3 C 0.036 3.964 4 C -0.262 4.262 5 C 0.157 3.843 6 N -0.325 5.325 7 C 0.311 3.689 8 O -0.434 6.434 9 C -0.165 4.165 10 C -0.136 4.136 11 C -0.134 4.134 12 C -0.020 4.020 13 C -0.577 4.577 14 H 0.084 0.916 15 C -0.205 4.205 16 N -0.578 5.578 17 Si 0.792 3.208 18 H -0.181 1.181 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.318 4.318 22 C 0.312 3.688 23 O -0.495 6.495 24 H 0.110 0.890 25 H 0.142 0.858 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.171 0.829 29 H 0.275 0.725 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.002 0.998 37 H 0.005 0.995 38 H 0.071 0.929 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.063 -4.437 16.919 27.378 hybrid contribution 1.164 -0.112 -0.375 1.228 sum -19.898 -4.548 16.544 26.274 Atomic orbital electron populations 1.22439 0.75136 1.05978 1.05239 1.45584 1.10841 1.06441 1.57974 1.22469 0.93054 0.90179 0.90699 1.20947 0.93575 0.98669 1.13008 1.18298 0.84191 0.93141 0.88671 1.43373 1.03902 1.56586 1.28642 1.21436 0.91468 0.76556 0.79422 1.90741 1.70595 1.41448 1.40635 1.21711 0.88378 1.04680 1.01737 1.21269 0.95450 0.99705 0.97137 1.21448 0.93622 0.99972 0.98361 1.19073 0.94952 0.94237 0.93727 1.21796 0.93513 1.31070 1.11331 0.91584 1.26080 1.04092 0.94968 0.95345 1.70134 1.37662 1.34387 1.15662 0.85356 0.79024 0.78056 0.78331 1.18103 1.20651 1.20473 1.22246 0.92759 0.99098 1.17721 1.16827 0.89098 0.83213 0.79619 1.90936 1.70266 1.31489 1.56816 0.88980 0.85789 0.90770 0.76573 0.82889 0.72538 0.85263 0.86017 0.93924 0.93218 0.91789 0.92209 0.99801 0.99486 0.92897 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.48 10.34 127.77 1.32 1.80 16 2 N -0.50 -7.91 2.99 -675.29 -2.02 -9.92 16 3 C 0.16 1.79 10.26 83.31 0.85 2.65 16 4 C -0.24 -3.86 8.84 22.21 0.20 -3.66 16 5 C 0.26 4.98 5.83 38.75 0.23 5.20 16 6 N -0.67 -11.22 5.26 -303.03 -1.59 -12.81 16 7 C 0.52 12.15 7.68 87.66 0.67 12.82 16 8 O -0.56 -18.21 15.05 -2.97 -0.04 -18.25 16 9 C -0.13 -2.62 5.70 29.85 0.17 -2.45 16 10 C -0.10 -3.22 4.50 30.59 0.14 -3.08 16 11 C -0.10 -3.73 5.15 30.59 0.16 -3.57 16 12 C 0.02 0.92 4.97 29.85 0.15 1.07 16 13 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 14 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 15 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 16 N -0.94 -58.43 13.29 21.45 0.28 -58.15 16 17 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 18 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 21 C -0.29 -6.57 9.96 22.73 0.23 -6.34 16 22 C 0.51 12.54 7.39 84.69 0.63 13.16 16 23 O -0.61 -19.68 16.61 -5.71 -0.09 -19.77 16 24 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.12 0.17 8.01 -2.39 -0.02 0.15 16 26 H 0.07 1.03 7.37 -2.39 -0.02 1.02 16 27 H 0.22 0.14 8.03 -2.91 -0.02 0.12 16 28 H 0.15 2.41 7.91 -2.91 -0.02 2.39 16 29 H 0.43 3.96 8.82 -92.71 -0.82 3.14 16 30 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.05 1.78 8.10 -2.38 -0.02 1.76 16 34 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 36 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 37 H -0.01 -0.78 8.14 -2.39 -0.02 -0.79 16 38 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 39 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -85.27 336.70 4.22 -81.05 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 0.23 Total: 4.36 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 5.43 Total: -12.92 kcal Atomic # 7 Polarization: -77.56 SS G_CDS: -3.33 Total: -80.88 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.14 Total: -38.02 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -85.27 4.22 -81.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331816911.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.593 kcal (2) G-P(sol) polarization free energy of solvation -85.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds