Wall clock time and date at job start Tue Mar 31 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35681 * 117.00263 * 2 1 4 4 C 1.38914 * 119.68381 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11288 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.47948 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35130 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 90.00037 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00208 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99730 * 0.02562 * 11 9 8 13 13 C 1.46496 * 120.00107 * 180.02562 * 11 9 8 14 14 C 1.50701 * 109.47558 * 90.00061 * 13 11 9 15 15 H 1.08003 * 119.99337 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99989 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99456 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00139 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46980 * 90.00027 * 18 16 14 20 20 H 1.48504 * 109.47074 * 209.99821 * 18 16 14 21 21 H 1.48497 * 109.47589 * 330.00025 * 18 16 14 22 22 C 1.38039 * 119.29144 * 0.25007 * 6 5 4 23 23 N 1.31964 * 120.83680 * 359.45709 * 22 6 5 24 24 H 1.08994 * 109.47181 * 59.99627 * 1 2 3 25 25 H 1.09003 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46736 * 299.99925 * 1 2 3 27 27 H 1.07999 * 120.45109 * 0.02633 * 4 3 2 28 28 H 1.07996 * 120.76435 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46953 * 209.99649 * 7 6 5 30 30 H 1.09000 * 109.47318 * 329.99247 * 7 6 5 31 31 H 1.09001 * 109.46832 * 299.99686 * 8 7 6 32 32 H 1.09004 * 109.47261 * 59.99705 * 8 7 6 33 33 H 1.08995 * 109.46994 * 90.00015 * 12 11 9 34 34 H 1.08998 * 109.47007 * 210.00594 * 12 11 9 35 35 H 1.09001 * 109.47259 * 330.00063 * 12 11 9 36 36 H 1.09001 * 109.47017 * 209.99969 * 13 11 9 37 37 H 1.08997 * 109.47346 * 329.99656 * 13 11 9 38 38 H 0.97003 * 119.99275 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.58576 * 179.72422 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2505 3.6491 -0.0005 7 6 3.8769 5.0198 -0.0006 8 6 4.0894 5.4834 -1.4430 9 6 4.7152 6.8543 -1.4430 10 8 4.9669 7.4060 -0.3927 11 7 4.9962 7.4669 -2.6102 12 6 4.6927 6.8002 -3.8790 13 6 5.6050 8.7993 -2.6101 14 6 7.1061 8.6658 -2.6090 15 1 7.5610 7.6863 -2.6080 16 6 7.8986 9.7941 -2.6093 17 7 9.2086 9.6774 -2.6078 18 14 7.1116 11.4881 -2.6118 19 1 6.9016 11.9384 -1.2124 20 1 8.0035 12.4472 -3.3119 21 1 5.8042 11.4256 -3.3131 22 6 1.8772 3.5096 0.0048 23 7 1.3186 2.3140 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 4.0229 0.3695 0.0005 28 1 5.1255 2.5946 0.0000 29 1 3.2182 5.7202 0.5128 30 1 4.8371 4.9805 0.5138 31 1 4.7481 4.7829 -1.9564 32 1 3.1291 5.5227 -1.9573 33 1 3.6827 7.0620 -4.1944 34 1 5.4054 7.1221 -4.6382 35 1 4.7641 5.7204 -3.7483 36 1 5.2893 9.3430 -3.5005 37 1 5.2880 9.3436 -1.7206 38 1 9.7661 10.4713 -2.6076 39 1 1.2518 4.3902 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332378685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:34 Heat of formation + Delta-G solvation = -40.010848 kcal Electronic energy + Delta-G solvation = -20740.808257 eV Core-core repulsion = 17456.029004 eV Total energy + Delta-G solvation = -3284.779253 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.82694 -39.16785 -38.17856 -35.02945 -34.09965 -32.56965 -32.30815 -30.02269 -28.40388 -27.42172 -25.96929 -24.67083 -23.60094 -22.36434 -21.21166 -18.59632 -18.39991 -17.30574 -16.96049 -16.57769 -16.20433 -15.36728 -15.24965 -14.97306 -14.64150 -14.47202 -14.11278 -13.69673 -13.28972 -13.23411 -12.91407 -12.44055 -12.25474 -12.19417 -12.11984 -12.00543 -11.60367 -11.48271 -11.22902 -11.06513 -10.82825 -10.52369 -10.15101 -10.02391 -9.77754 -9.55338 -9.05608 -8.59660 -8.50381 -7.71001 -6.09594 -4.08328 0.97136 1.09897 2.88491 3.28708 3.34188 3.34838 3.36448 3.55955 3.87817 4.13810 4.38957 4.65524 4.80332 4.83388 4.92646 5.05283 5.05857 5.18710 5.22597 5.24888 5.32540 5.39469 5.50518 5.55707 5.74565 5.79082 5.84030 5.92322 6.15153 6.16809 6.30451 6.33524 6.69262 6.93833 7.01951 7.32728 7.60382 7.65935 8.24251 8.46240 8.91739 8.98012 9.50795 11.03833 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043118 B = 0.002956 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.227445 B = 9470.887803 C = 9571.761055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.308 3.692 4 C -0.187 4.187 5 C -0.037 4.037 6 C -0.162 4.162 7 C -0.057 4.057 8 C -0.133 4.133 9 C 0.505 3.495 10 O -0.542 6.542 11 N -0.599 5.599 12 C 0.083 3.917 13 C 0.214 3.786 14 C -0.528 4.528 15 H 0.074 0.926 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.266 1.266 22 C 0.140 3.860 23 N -0.539 5.539 24 H 0.058 0.942 25 H 0.094 0.906 26 H 0.057 0.943 27 H 0.140 0.860 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.352 -16.673 1.886 23.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.129 3.871 4 C -0.207 4.207 5 C -0.063 4.063 6 C -0.164 4.164 7 C -0.095 4.095 8 C -0.173 4.173 9 C 0.292 3.708 10 O -0.420 6.420 11 N -0.331 5.331 12 C -0.061 4.061 13 C 0.094 3.906 14 C -0.567 4.567 15 H 0.092 0.908 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.015 4.015 23 N -0.262 5.262 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.076 0.924 27 H 0.158 0.842 28 H 0.162 0.838 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.858 -16.613 2.415 23.791 hybrid contribution 0.464 1.019 -0.198 1.137 sum -16.394 -15.594 2.217 22.735 Atomic orbital electron populations 1.22827 0.77389 1.02750 1.02444 1.86224 1.22804 1.24756 1.88088 1.19841 0.89458 0.84669 0.93101 1.21068 0.91949 0.99573 1.08148 1.21429 1.00863 0.90668 0.93325 1.20861 0.94684 0.96756 1.04117 1.20217 1.02117 0.90978 0.96220 1.21678 1.01957 0.95518 0.98143 1.20372 0.79182 0.87255 0.83989 1.90669 1.53721 1.66658 1.30943 1.47859 1.60469 1.19805 1.04985 1.21663 1.00170 0.97040 0.87192 1.19663 0.94257 0.79378 0.97330 1.21327 0.88871 0.95157 1.51322 0.90818 1.24871 0.94717 0.99066 0.94455 1.69904 1.03515 1.29678 1.50548 0.86832 0.79506 0.84364 0.78873 1.19894 1.21079 1.19079 1.22340 0.92370 0.93488 0.93307 1.67310 1.40921 0.98808 1.19187 0.92342 0.88794 0.92387 0.84187 0.83840 0.89924 0.89756 0.89269 0.89544 0.93676 0.90616 0.92105 0.95293 0.94545 0.92563 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.37 10.48 -18.75 -0.20 -3.57 16 3 C 0.31 3.58 7.49 -17.12 -0.13 3.45 16 4 C -0.19 -1.93 10.04 -39.28 -0.39 -2.32 16 5 C -0.04 -0.38 9.85 -39.31 -0.39 -0.77 16 6 C -0.16 -1.76 5.15 -104.47 -0.54 -2.30 16 7 C -0.06 -0.71 4.66 -27.88 -0.13 -0.84 16 8 C -0.13 -1.77 4.23 -27.89 -0.12 -1.89 16 9 C 0.51 9.83 7.67 -10.99 -0.08 9.74 16 10 O -0.54 -12.85 15.56 5.56 0.09 -12.77 16 11 N -0.60 -12.10 2.86 -182.96 -0.52 -12.62 16 12 C 0.08 1.24 10.24 59.85 0.61 1.86 16 13 C 0.21 5.22 4.23 -5.20 -0.02 5.20 16 14 C -0.53 -15.14 9.94 -34.44 -0.34 -15.49 16 15 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 17 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 22 C 0.14 1.52 10.85 -17.57 -0.19 1.33 16 23 N -0.54 -6.40 9.22 -13.33 -0.12 -6.52 16 24 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 25 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 27 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.08 1.04 8.05 -51.93 -0.42 0.62 16 30 H 0.08 1.14 8.05 -51.93 -0.42 0.73 16 31 H 0.09 1.09 7.40 -51.93 -0.38 0.70 16 32 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 35 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 36 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 37 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 38 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 39 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -35.02 333.63 -6.06 -41.08 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -5.67 Total: -1.93 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -0.77 Total: 1.33 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.13 Total: -46.04 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.11 Total: -16.34 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.02 -6.06 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332378685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.065 kcal (2) G-P(sol) polarization free energy of solvation -35.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds