Wall clock time and date at job start Tue Mar 31 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35681 * 117.00263 * 2 1 4 4 C 1.38914 * 119.68381 * 179.97438 * 3 2 1 5 5 C 1.38381 * 119.11288 * 179.97438 * 4 3 2 6 6 C 1.38834 * 118.47948 * 0.02562 * 5 4 3 7 7 C 1.50706 * 120.35130 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47238 * 90.00037 * 7 6 5 9 9 C 1.50696 * 109.47055 * 179.97438 * 8 7 6 10 10 O 1.21279 * 120.00218 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00208 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99730 * 0.02562 * 11 9 8 13 13 C 1.46496 * 120.00107 * 180.02562 * 11 9 8 14 14 C 1.50701 * 109.47558 * 90.00061 * 13 11 9 15 15 H 1.08003 * 119.99337 * 359.97438 * 14 13 11 16 16 C 1.37874 * 119.99989 * 179.97438 * 14 13 11 17 17 N 1.31522 * 119.99456 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 120.00139 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.46980 * 90.00027 * 18 16 14 20 20 H 1.48504 * 109.47074 * 209.99821 * 18 16 14 21 21 H 1.48497 * 109.47589 * 330.00025 * 18 16 14 22 22 C 1.38039 * 119.29144 * 0.25007 * 6 5 4 23 23 N 1.31964 * 120.83680 * 359.45709 * 22 6 5 24 24 H 1.08994 * 109.47181 * 59.99627 * 1 2 3 25 25 H 1.09003 * 109.47376 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46736 * 299.99925 * 1 2 3 27 27 H 1.07999 * 120.45109 * 0.02633 * 4 3 2 28 28 H 1.07996 * 120.76435 * 180.02562 * 5 4 3 29 29 H 1.09001 * 109.46953 * 209.99649 * 7 6 5 30 30 H 1.09000 * 109.47318 * 329.99247 * 7 6 5 31 31 H 1.09001 * 109.46832 * 299.99686 * 8 7 6 32 32 H 1.09004 * 109.47261 * 59.99705 * 8 7 6 33 33 H 1.08995 * 109.46994 * 90.00015 * 12 11 9 34 34 H 1.08998 * 109.47007 * 210.00594 * 12 11 9 35 35 H 1.09001 * 109.47259 * 330.00063 * 12 11 9 36 36 H 1.09001 * 109.47017 * 209.99969 * 13 11 9 37 37 H 1.08997 * 109.47346 * 329.99656 * 13 11 9 38 38 H 0.97003 * 119.99275 * 180.02562 * 17 16 14 39 39 H 1.08005 * 119.58576 * 179.72422 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2505 3.6491 -0.0005 7 6 3.8769 5.0198 -0.0006 8 6 4.0894 5.4834 -1.4430 9 6 4.7152 6.8543 -1.4430 10 8 4.9669 7.4060 -0.3927 11 7 4.9962 7.4669 -2.6102 12 6 4.6927 6.8002 -3.8790 13 6 5.6050 8.7993 -2.6101 14 6 7.1061 8.6658 -2.6090 15 1 7.5610 7.6863 -2.6080 16 6 7.8986 9.7941 -2.6093 17 7 9.2086 9.6774 -2.6078 18 14 7.1116 11.4881 -2.6118 19 1 6.9016 11.9384 -1.2124 20 1 8.0035 12.4472 -3.3119 21 1 5.8042 11.4256 -3.3131 22 6 1.8772 3.5096 0.0048 23 7 1.3186 2.3140 -0.0005 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8901 27 1 4.0229 0.3695 0.0005 28 1 5.1255 2.5946 0.0000 29 1 3.2182 5.7202 0.5128 30 1 4.8371 4.9805 0.5138 31 1 4.7481 4.7829 -1.9564 32 1 3.1291 5.5227 -1.9573 33 1 3.6827 7.0620 -4.1944 34 1 5.4054 7.1221 -4.6382 35 1 4.7641 5.7204 -3.7483 36 1 5.2893 9.3430 -3.5005 37 1 5.2880 9.3436 -1.7206 38 1 9.7661 10.4713 -2.6076 39 1 1.2518 4.3902 0.0089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332378685.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:40:34 Heat of formation + Delta-G solvation = -65.320842 kcal Electronic energy + Delta-G solvation = -20741.905781 eV Core-core repulsion = 17456.029004 eV Total energy + Delta-G solvation = -3285.876777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.64296 -40.64557 -39.00320 -36.65430 -35.17727 -34.63245 -33.17052 -31.28942 -29.93851 -28.19223 -27.32317 -25.92094 -24.43178 -23.91292 -22.32302 -19.88920 -19.35686 -19.13962 -18.10232 -17.94810 -17.09153 -16.93151 -16.63128 -15.98004 -15.89348 -15.41407 -15.25475 -14.83684 -14.50381 -14.38629 -14.21667 -13.94761 -13.63761 -13.55412 -13.34833 -13.02738 -12.89620 -12.74028 -12.50026 -12.40346 -12.05505 -12.02050 -11.92241 -11.73772 -10.85614 -10.82341 -10.64576 -10.56532 -9.36057 -9.34658 -8.33663 -6.38558 0.16317 0.28588 1.33512 1.37464 1.45955 1.85239 2.17160 2.31577 2.38647 2.78055 3.00920 3.37125 3.63161 3.94847 4.00064 4.06230 4.22300 4.28510 4.36964 4.44319 4.45114 4.49206 4.68502 4.69371 4.73547 4.77906 4.84949 4.95138 4.99703 5.01440 5.03497 5.22082 5.42096 5.46964 5.50544 5.64484 6.24596 6.25329 6.62803 6.74328 6.84696 7.22552 7.46472 8.83308 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.043118 B = 0.002956 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.227445 B = 9470.887803 C = 9571.761055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.294 3.706 4 C -0.190 4.190 5 C -0.038 4.038 6 C -0.163 4.163 7 C -0.048 4.048 8 C -0.117 4.117 9 C 0.494 3.506 10 O -0.596 6.596 11 N -0.610 5.610 12 C 0.077 3.923 13 C 0.221 3.779 14 C -0.535 4.535 15 H 0.028 0.972 16 C 0.009 3.991 17 N -0.946 5.946 18 Si 0.949 3.051 19 H -0.276 1.276 20 H -0.276 1.276 21 H -0.238 1.238 22 C 0.138 3.862 23 N -0.553 5.553 24 H 0.056 0.944 25 H 0.121 0.879 26 H 0.054 0.946 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.019 0.981 38 H 0.268 0.732 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.562 -17.189 0.965 25.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.116 3.884 4 C -0.210 4.210 5 C -0.063 4.063 6 C -0.165 4.165 7 C -0.087 4.087 8 C -0.157 4.157 9 C 0.284 3.716 10 O -0.477 6.477 11 N -0.342 5.342 12 C -0.065 4.065 13 C 0.099 3.901 14 C -0.574 4.574 15 H 0.047 0.953 16 C -0.189 4.189 17 N -0.587 5.587 18 Si 0.772 3.228 19 H -0.202 1.202 20 H -0.201 1.201 21 H -0.161 1.161 22 C -0.018 4.018 23 N -0.276 5.276 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.073 0.927 27 H 0.175 0.825 28 H 0.175 0.825 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.125 0.875 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -19.103 -17.176 1.453 25.730 hybrid contribution 1.173 1.052 0.105 1.579 sum -17.929 -16.124 1.557 24.163 Atomic orbital electron populations 1.23023 0.76030 1.04512 1.02145 1.86214 1.24235 1.24541 1.87982 1.20146 0.90129 0.84917 0.93243 1.21287 0.91756 1.00292 1.07670 1.21635 1.01627 0.90443 0.92582 1.20674 0.94804 0.95936 1.05121 1.20061 1.01280 0.91849 0.95495 1.21666 1.03192 0.91472 0.99341 1.21473 0.78300 0.88943 0.82880 1.90637 1.55918 1.68350 1.32790 1.48007 1.59996 1.18810 1.07337 1.21966 1.01634 0.98433 0.84473 1.19331 0.91478 0.82186 0.97145 1.21574 0.91530 0.93329 1.50925 0.95338 1.25880 0.95174 1.03945 0.93922 1.70058 1.05339 1.31196 1.52060 0.85694 0.79797 0.78353 0.78978 1.20185 1.20091 1.16063 1.22619 0.92580 0.93815 0.92741 1.67342 1.41319 0.99147 1.19807 0.92556 0.86083 0.92715 0.82523 0.82464 0.90375 0.91512 0.87535 0.86259 0.90230 0.91838 0.89153 0.93324 0.96294 0.92298 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.50 10.48 -89.99 -0.94 -7.45 16 3 C 0.29 6.38 7.49 84.79 0.63 7.02 16 4 C -0.19 -3.56 10.04 22.47 0.23 -3.34 16 5 C -0.04 -0.69 9.85 22.45 0.22 -0.47 16 6 C -0.16 -3.24 5.15 -19.77 -0.10 -3.35 16 7 C -0.05 -1.14 4.66 29.85 0.14 -1.00 16 8 C -0.12 -2.84 4.23 29.85 0.13 -2.72 16 9 C 0.49 18.87 7.67 87.66 0.67 19.55 16 10 O -0.60 -28.74 15.56 -3.03 -0.05 -28.78 16 11 N -0.61 -23.95 2.86 -851.14 -2.43 -26.38 16 12 C 0.08 2.08 10.24 127.77 1.31 3.39 16 13 C 0.22 10.68 4.23 85.63 0.36 11.04 16 14 C -0.53 -31.42 9.94 25.60 0.25 -31.16 16 15 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 16 C 0.01 0.51 5.47 84.65 0.46 0.97 16 17 N -0.95 -59.91 13.96 21.45 0.30 -59.62 16 18 Si 0.95 44.38 27.47 68.60 1.88 46.27 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.24 -9.93 6.54 99.48 0.65 -9.27 16 22 C 0.14 2.71 10.85 84.63 0.92 3.63 16 23 N -0.55 -12.20 9.22 -308.95 -2.85 -15.05 16 24 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 25 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 27 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 28 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 30 H 0.07 1.80 8.05 -2.39 -0.02 1.78 16 31 H 0.11 2.27 7.40 -2.39 -0.02 2.25 16 32 H 0.12 2.17 8.11 -2.38 -0.02 2.15 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 35 H 0.09 1.90 6.44 -2.39 -0.02 1.88 16 36 H 0.05 2.15 7.13 -2.39 -0.02 2.14 16 37 H 0.02 0.98 6.85 -2.39 -0.02 0.97 16 38 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 39 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -79.01 333.63 3.29 -75.72 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.98 Total: 10.03 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 6.40 Total: 5.27 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -4.98 Total: -101.05 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.99 Total: -36.23 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.27 kcal Total: -79.01 3.29 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332378685.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.398 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds