Wall clock time and date at job start Mon Mar 30 2020 23:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47323 * 2 1 4 4 N 1.28453 * 125.19639 * 270.18305 * 3 2 1 5 5 C 1.30875 * 110.94218 * 180.23811 * 4 3 2 6 6 C 1.50702 * 126.05848 * 179.73003 * 5 4 3 7 7 C 1.52999 * 117.49796 * 163.77464 * 6 5 4 8 8 C 1.52997 * 117.49850 * 95.11481 * 6 5 4 9 9 C 1.39642 * 107.88444 * 359.75364 * 5 4 3 10 10 C 1.36648 * 125.20049 * 89.99689 * 3 2 1 11 11 C 1.47010 * 126.89087 * 0.03645 * 10 3 2 12 12 O 1.21548 * 120.00419 * 179.70430 * 11 10 3 13 13 O 1.34819 * 120.00026 * 359.71428 * 11 10 3 14 14 C 1.45194 * 117.00174 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47429 * 29.99733 * 14 13 11 16 16 C 1.53006 * 109.46979 * 269.99785 * 14 13 11 17 17 C 1.50697 * 109.47474 * 149.99513 * 14 13 11 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99600 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00227 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.46909 * 90.00072 * 21 19 17 23 23 H 1.48503 * 109.46868 * 209.99959 * 21 19 17 24 24 H 1.48495 * 109.46964 * 330.00013 * 21 19 17 25 25 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47140 * 299.99775 * 1 2 3 27 27 H 1.08994 * 109.47122 * 59.99955 * 1 2 3 28 28 H 1.09001 * 109.47577 * 239.99943 * 2 1 3 29 29 H 1.09004 * 109.47478 * 119.99614 * 2 1 3 30 30 H 1.08996 * 115.54976 * 309.44626 * 6 5 4 31 31 H 1.08997 * 117.50270 * 0.02562 * 7 6 5 32 32 H 1.09005 * 117.50101 * 145.02551 * 7 6 5 33 33 H 1.08993 * 117.50144 * 214.97957 * 8 6 5 34 34 H 1.09003 * 117.50048 * 359.97438 * 8 6 5 35 35 H 1.07997 * 127.32374 * 179.97438 * 9 5 4 36 36 H 1.09001 * 109.47002 * 299.99655 * 16 14 13 37 37 H 1.08993 * 109.46955 * 60.00092 * 16 14 13 38 38 H 1.09000 * 109.47050 * 179.97438 * 16 14 13 39 39 H 0.97006 * 120.00212 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2620 2.0803 -1.0497 5 6 2.6906 3.2742 -0.7275 6 6 3.0813 4.3661 -1.6899 7 6 3.1894 5.7889 -1.1378 8 6 2.0182 5.4071 -2.0465 9 6 2.7223 3.3568 0.6662 10 6 2.2809 2.1238 1.1166 11 6 2.1308 1.6974 2.5155 12 8 2.4074 2.4637 3.4175 13 8 1.6866 0.4562 2.7979 14 6 1.5635 0.1035 4.2009 15 1 1.3398 0.9980 4.7823 16 6 2.8783 -0.5072 4.6905 17 6 0.4503 -0.8978 4.3715 18 1 -0.1086 -1.2356 3.5113 19 6 0.1459 -1.3834 5.6255 20 7 0.8268 -0.9724 6.6728 21 14 -1.2336 -2.6251 5.8367 22 1 -0.6862 -3.9996 5.7094 23 1 -1.8478 -2.4592 7.1786 24 1 -2.2635 -2.4036 4.7902 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7827 4.0749 -2.4716 31 1 2.9784 5.9352 -0.0785 32 1 3.9618 6.4340 -1.5568 33 1 2.0206 5.8010 -3.0627 34 1 1.0362 5.3019 -1.5854 35 1 3.0268 4.2022 1.2652 36 1 3.1020 -1.4018 4.1092 37 1 3.6834 0.2170 4.5672 38 1 2.7861 -0.7716 5.7439 39 1 0.6125 -1.3138 7.5552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342503836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:51 Heat of formation + Delta-G solvation = 7.113849 kcal Electronic energy + Delta-G solvation = -21780.698612 eV Core-core repulsion = 18497.962839 eV Total energy + Delta-G solvation = -3282.735773 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.43990 -39.32435 -37.31535 -35.87395 -34.11701 -33.30675 -30.91897 -29.68559 -29.42058 -25.41864 -24.53126 -24.19207 -22.48253 -22.25522 -20.91352 -20.34271 -19.17239 -17.56079 -16.69170 -16.14246 -15.94071 -15.80458 -14.90547 -14.76851 -14.48571 -14.37771 -14.25977 -13.31061 -13.06950 -12.56546 -12.33969 -12.16422 -11.91716 -11.88188 -11.60194 -11.33865 -11.27264 -11.13299 -10.94500 -10.88738 -10.68183 -10.46882 -10.37325 -10.27268 -9.92803 -9.67002 -9.02012 -8.95237 -8.71607 -8.57238 -6.26218 -4.33986 1.40620 2.55765 2.56778 3.18925 3.23497 3.27045 3.42775 3.44586 3.76518 4.25091 4.34478 4.77708 4.85844 4.89808 5.07012 5.12468 5.12650 5.21689 5.40148 5.45321 5.53362 5.70006 5.73641 5.79847 5.95883 6.01396 6.04462 6.10031 6.28176 6.52258 6.57398 6.77782 6.81130 6.89040 7.01428 7.48417 7.62086 7.80812 8.02804 8.16203 8.47883 8.75468 9.31692 10.81195 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.004302 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.904948 B = 6507.279939 C = 7035.494999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.256 5.256 4 N -0.268 5.268 5 C 0.043 3.957 6 C -0.068 4.068 7 C -0.168 4.168 8 C -0.168 4.168 9 C -0.158 4.158 10 C -0.011 4.011 11 C 0.527 3.473 12 O -0.501 6.501 13 O -0.353 6.353 14 C 0.217 3.783 15 H 0.049 0.951 16 C -0.156 4.156 17 C -0.522 4.522 18 H 0.069 0.931 19 C 0.064 3.936 20 N -0.887 5.887 21 Si 0.912 3.088 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.271 1.271 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.162 0.838 36 H 0.037 0.963 37 H 0.017 0.983 38 H 0.101 0.899 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.594 6.333 -14.799 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.046 5.046 4 N -0.103 5.103 5 C -0.112 4.112 6 C -0.088 4.088 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.186 4.186 10 C -0.137 4.137 11 C 0.369 3.631 12 O -0.389 6.389 13 O -0.270 6.270 14 C 0.165 3.835 15 H 0.067 0.933 16 C -0.214 4.214 17 C -0.560 4.560 18 H 0.087 0.913 19 C -0.139 4.139 20 N -0.525 5.525 21 Si 0.738 3.262 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.196 1.196 25 H 0.101 0.899 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.179 0.821 36 H 0.056 0.944 37 H 0.036 0.964 38 H 0.119 0.881 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.366 5.621 -15.126 16.309 hybrid contribution -0.456 -0.212 1.083 1.194 sum 1.910 5.409 -14.043 15.169 Atomic orbital electron populations 1.22086 0.93200 1.03791 1.03055 1.22278 0.96528 0.76014 1.05958 1.46046 1.44359 1.12433 1.01794 1.72990 1.17893 1.05376 1.13994 1.20909 1.05134 0.92911 0.92277 1.19965 1.02756 0.86709 0.99350 1.23022 1.01003 0.96153 1.00392 1.22998 0.94803 1.02249 1.00578 1.21905 1.05649 0.96908 0.94131 1.21031 1.11455 0.94033 0.87154 1.19637 0.74989 0.82015 0.86467 1.90832 1.47058 1.54471 1.46503 1.86555 1.75171 1.28897 1.36366 1.20727 0.94994 0.96361 0.71453 0.93347 1.22184 0.95722 0.98523 1.04952 1.20966 1.16155 1.24826 0.94053 0.91254 1.24879 0.96977 0.96758 0.95242 1.69891 1.40047 1.43314 0.99200 0.86276 0.81355 0.80836 0.77692 1.20329 1.20926 1.19616 0.89872 0.91011 0.92315 0.88476 0.86020 0.86508 0.88197 0.88187 0.88421 0.88673 0.82070 0.94391 0.96423 0.88067 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.57 6.50 -4.04 -0.03 1.55 16 3 N -0.26 -4.21 3.35 -57.15 -0.19 -4.41 16 4 N -0.27 -4.28 11.90 33.63 0.40 -3.88 16 5 C 0.04 0.64 6.85 -82.48 -0.57 0.07 16 6 C -0.07 -0.76 6.33 -91.77 -0.58 -1.34 16 7 C -0.17 -1.53 10.03 -26.69 -0.27 -1.80 16 8 C -0.17 -1.59 10.24 -26.69 -0.27 -1.87 16 9 C -0.16 -2.55 10.13 -38.97 -0.39 -2.94 16 10 C -0.01 -0.20 6.96 -82.07 -0.57 -0.77 16 11 C 0.53 11.37 7.91 34.29 0.27 11.64 16 12 O -0.50 -12.03 16.18 -19.30 -0.31 -12.34 16 13 O -0.35 -7.95 7.33 -40.82 -0.30 -8.25 16 14 C 0.22 5.58 2.56 -27.88 -0.07 5.51 16 15 H 0.05 1.39 7.16 -51.93 -0.37 1.02 16 16 C -0.16 -3.83 9.33 37.16 0.35 -3.48 16 17 C -0.52 -13.90 8.90 -34.44 -0.31 -14.21 16 18 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 19 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.49 11.32 55.43 0.63 -23.87 16 21 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 25 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.12 1.88 6.15 -51.93 -0.32 1.56 16 30 H 0.12 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.10 0.95 7.22 -51.93 -0.37 0.58 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.16 2.36 7.48 -52.49 -0.39 1.97 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 333.82 15.07 5.03 5.03 Total: -1.00 -29.83 333.82 -7.47 -37.30 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.55 Total: 2.93 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: -2.15 Total: -7.85 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.84 Total: -32.15 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.61 Total: -20.60 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.83 -7.47 -37.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342503836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.413 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds