Wall clock time and date at job start Mon Mar 30 2020 23:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47323 * 2 1 4 4 N 1.28453 * 125.19639 * 270.18305 * 3 2 1 5 5 C 1.30875 * 110.94218 * 180.23811 * 4 3 2 6 6 C 1.50702 * 126.05848 * 179.73003 * 5 4 3 7 7 C 1.52999 * 117.49796 * 163.77464 * 6 5 4 8 8 C 1.52997 * 117.49850 * 95.11481 * 6 5 4 9 9 C 1.39642 * 107.88444 * 359.75364 * 5 4 3 10 10 C 1.36648 * 125.20049 * 89.99689 * 3 2 1 11 11 C 1.47010 * 126.89087 * 0.03645 * 10 3 2 12 12 O 1.21548 * 120.00419 * 179.70430 * 11 10 3 13 13 O 1.34819 * 120.00026 * 359.71428 * 11 10 3 14 14 C 1.45194 * 117.00174 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.47429 * 29.99733 * 14 13 11 16 16 C 1.53006 * 109.46979 * 269.99785 * 14 13 11 17 17 C 1.50697 * 109.47474 * 149.99513 * 14 13 11 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31510 * 119.99600 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00227 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.46909 * 90.00072 * 21 19 17 23 23 H 1.48503 * 109.46868 * 209.99959 * 21 19 17 24 24 H 1.48495 * 109.46964 * 330.00013 * 21 19 17 25 25 H 1.09001 * 109.46680 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47140 * 299.99775 * 1 2 3 27 27 H 1.08994 * 109.47122 * 59.99955 * 1 2 3 28 28 H 1.09001 * 109.47577 * 239.99943 * 2 1 3 29 29 H 1.09004 * 109.47478 * 119.99614 * 2 1 3 30 30 H 1.08996 * 115.54976 * 309.44626 * 6 5 4 31 31 H 1.08997 * 117.50270 * 0.02562 * 7 6 5 32 32 H 1.09005 * 117.50101 * 145.02551 * 7 6 5 33 33 H 1.08993 * 117.50144 * 214.97957 * 8 6 5 34 34 H 1.09003 * 117.50048 * 359.97438 * 8 6 5 35 35 H 1.07997 * 127.32374 * 179.97438 * 9 5 4 36 36 H 1.09001 * 109.47002 * 299.99655 * 16 14 13 37 37 H 1.08993 * 109.46955 * 60.00092 * 16 14 13 38 38 H 1.09000 * 109.47050 * 179.97438 * 16 14 13 39 39 H 0.97006 * 120.00212 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2620 2.0803 -1.0497 5 6 2.6906 3.2742 -0.7275 6 6 3.0813 4.3661 -1.6899 7 6 3.1894 5.7889 -1.1378 8 6 2.0182 5.4071 -2.0465 9 6 2.7223 3.3568 0.6662 10 6 2.2809 2.1238 1.1166 11 6 2.1308 1.6974 2.5155 12 8 2.4074 2.4637 3.4175 13 8 1.6866 0.4562 2.7979 14 6 1.5635 0.1035 4.2009 15 1 1.3398 0.9980 4.7823 16 6 2.8783 -0.5072 4.6905 17 6 0.4503 -0.8978 4.3715 18 1 -0.1086 -1.2356 3.5113 19 6 0.1459 -1.3834 5.6255 20 7 0.8268 -0.9724 6.6728 21 14 -1.2336 -2.6251 5.8367 22 1 -0.6862 -3.9996 5.7094 23 1 -1.8478 -2.4592 7.1786 24 1 -2.2635 -2.4036 4.7902 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7827 4.0749 -2.4716 31 1 2.9784 5.9352 -0.0785 32 1 3.9618 6.4340 -1.5568 33 1 2.0206 5.8010 -3.0627 34 1 1.0362 5.3019 -1.5854 35 1 3.0268 4.2022 1.2652 36 1 3.1020 -1.4018 4.1092 37 1 3.6834 0.2170 4.5672 38 1 2.7861 -0.7716 5.7439 39 1 0.6125 -1.3138 7.5552 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342503836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:50:50 Heat of formation + Delta-G solvation = -8.364497 kcal Electronic energy + Delta-G solvation = -21781.369804 eV Core-core repulsion = 18497.962839 eV Total energy + Delta-G solvation = -3283.406964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.72263 -41.12271 -38.17054 -37.72269 -35.48535 -35.08828 -32.43216 -31.45155 -30.70767 -27.47870 -25.85357 -25.50447 -23.57611 -23.15105 -22.69452 -21.59159 -20.68323 -19.00578 -18.55995 -17.86574 -17.38072 -17.00083 -16.58084 -16.39697 -15.87274 -15.58687 -15.22078 -14.84813 -14.56511 -14.25367 -14.00793 -13.64077 -13.25677 -13.15850 -12.95862 -12.91472 -12.80512 -12.44691 -12.38157 -12.29323 -12.16845 -12.08150 -11.70872 -11.63081 -11.52200 -11.17546 -11.04075 -10.61587 -10.31654 -9.86826 -8.29366 -6.46050 -0.07612 1.31132 1.35549 1.42740 1.44412 1.54823 1.75680 1.83592 2.38699 2.92515 3.02335 3.28109 3.57273 3.83941 3.99958 4.00909 4.07618 4.21066 4.31406 4.36203 4.39228 4.50225 4.64886 4.73147 4.76088 4.81103 4.86874 4.89276 5.04792 5.07641 5.16056 5.25296 5.32529 5.36064 5.44858 5.56536 5.64784 5.82093 5.98802 6.53916 6.74359 6.94914 7.24783 8.78573 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028714 B = 0.004302 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.904948 B = 6507.279939 C = 7035.494999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.106 3.894 3 N -0.255 5.255 4 N -0.267 5.267 5 C 0.048 3.952 6 C -0.087 4.087 7 C -0.158 4.158 8 C -0.161 4.161 9 C -0.153 4.153 10 C -0.041 4.041 11 C 0.527 3.473 12 O -0.534 6.534 13 O -0.346 6.346 14 C 0.219 3.781 15 H 0.008 0.992 16 C -0.144 4.144 17 C -0.542 4.542 18 H 0.074 0.926 19 C 0.018 3.982 20 N -0.917 5.917 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.263 1.263 25 H 0.103 0.897 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.128 0.872 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.172 0.828 36 H 0.049 0.951 37 H 0.021 0.979 38 H 0.083 0.917 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.304 6.185 -17.054 18.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.013 4.013 3 N -0.046 5.046 4 N -0.102 5.102 5 C -0.107 4.107 6 C -0.107 4.107 7 C -0.195 4.195 8 C -0.199 4.199 9 C -0.181 4.181 10 C -0.167 4.167 11 C 0.371 3.629 12 O -0.424 6.424 13 O -0.262 6.262 14 C 0.167 3.833 15 H 0.026 0.974 16 C -0.202 4.202 17 C -0.580 4.580 18 H 0.092 0.908 19 C -0.182 4.182 20 N -0.555 5.555 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.188 1.188 25 H 0.122 0.878 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.123 0.877 30 H 0.151 0.849 31 H 0.110 0.890 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.189 0.811 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.101 0.899 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.082 5.471 -17.405 18.363 hybrid contribution -0.333 -0.074 1.712 1.746 sum 1.748 5.397 -15.693 16.687 Atomic orbital electron populations 1.22040 0.92632 1.04805 1.01919 1.22461 0.96967 0.75210 1.06638 1.46260 1.44146 1.12980 1.01181 1.73017 1.17740 1.05909 1.13541 1.21477 1.03694 0.93273 0.92224 1.20167 1.04417 0.86436 0.99661 1.23141 1.01401 0.94808 1.00168 1.23072 0.93962 1.00939 1.01914 1.22199 1.04440 0.96336 0.95173 1.20774 1.14370 0.95525 0.85991 1.20124 0.73837 0.81166 0.87742 1.90804 1.48665 1.55021 1.47886 1.86564 1.75516 1.29764 1.34388 1.20461 0.95613 0.94683 0.72587 0.97380 1.22016 0.95319 0.98957 1.03882 1.21240 1.16773 1.25266 0.94675 0.90774 1.25802 0.99288 0.98458 0.94672 1.70018 1.41436 1.44346 0.99718 0.85197 0.78213 0.78441 0.77675 1.19175 1.20714 1.18760 0.87808 0.94135 0.91277 0.85359 0.87691 0.84901 0.88977 0.85654 0.86004 0.89998 0.81081 0.93183 0.96030 0.89862 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 10.24 71.98 0.74 -3.31 16 2 C 0.11 2.89 6.50 86.38 0.56 3.45 16 3 N -0.26 -8.24 3.35 -334.74 -1.12 -9.36 16 4 N -0.27 -8.12 11.90 -47.51 -0.57 -8.69 16 5 C 0.05 1.35 6.85 43.04 0.29 1.65 16 6 C -0.09 -1.71 6.33 -11.54 -0.07 -1.79 16 7 C -0.16 -2.44 10.03 30.62 0.31 -2.14 16 8 C -0.16 -2.61 10.24 30.62 0.31 -2.30 16 9 C -0.15 -4.89 10.13 22.67 0.23 -4.66 16 10 C -0.04 -1.53 6.96 40.75 0.28 -1.25 16 11 C 0.53 23.61 7.91 70.12 0.55 24.16 16 12 O -0.53 -26.85 16.18 19.68 0.32 -26.53 16 13 O -0.35 -16.13 7.33 -57.31 -0.42 -16.55 16 14 C 0.22 11.72 2.56 29.85 0.08 11.79 16 15 H 0.01 0.51 7.16 -2.39 -0.02 0.49 16 16 C -0.14 -7.26 9.33 71.98 0.67 -6.59 16 17 C -0.54 -29.32 8.90 25.60 0.23 -29.10 16 18 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 19 C 0.02 0.94 5.30 84.66 0.45 1.39 16 20 N -0.92 -51.55 11.32 21.45 0.24 -51.31 16 21 Si 0.98 41.42 29.54 68.60 2.03 43.44 16 22 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 23 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 25 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.10 3.25 6.15 -2.39 -0.01 3.23 16 30 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 1.59 7.22 -2.39 -0.02 1.57 16 32 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.17 4.98 7.48 -2.91 -0.02 4.96 16 36 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 4.52 6.07 -2.39 -0.01 4.50 16 39 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -65.35 333.82 6.16 -59.19 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 1.05 Total: 18.48 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.63 Total: -8.67 kcal Atomic # 7 Polarization: -67.92 SS G_CDS: -1.44 Total: -69.36 kcal Atomic # 8 Polarization: -42.98 SS G_CDS: -0.10 Total: -43.08 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Total: -65.35 6.16 -59.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342503836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.827 kcal (2) G-P(sol) polarization free energy of solvation -65.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds