Wall clock time and date at job start Mon Mar 30 2020 23:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47840 * 2 1 4 4 C 1.34955 * 126.03844 * 124.96764 * 3 2 1 5 5 C 1.35309 * 107.74347 * 179.75538 * 4 3 2 6 6 C 1.39870 * 107.92161 * 0.39930 * 5 4 3 7 7 C 1.50703 * 125.89754 * 179.86466 * 6 5 4 8 8 C 1.50696 * 109.47478 * 124.71739 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00640 * 180.27539 * 8 7 6 11 11 C 1.45193 * 117.00126 * 179.71955 * 10 8 7 12 12 H 1.08997 * 109.47373 * 30.00272 * 11 10 8 13 13 C 1.50706 * 109.46848 * 149.99911 * 11 10 8 14 14 H 1.08002 * 119.99636 * 0.02562 * 13 11 10 15 15 C 1.37873 * 119.99798 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00508 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99737 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47155 * 60.00373 * 17 15 13 19 19 H 1.48496 * 109.47192 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47113 * 300.00264 * 17 15 13 21 21 C 1.53002 * 109.47377 * 269.99754 * 11 10 8 22 22 C 1.52994 * 117.49822 * 128.74842 * 21 11 10 23 23 C 1.52996 * 117.49740 * 60.08768 * 21 11 10 24 24 N 1.30831 * 108.20400 * 359.60003 * 6 5 4 25 25 H 1.08997 * 109.47056 * 300.00087 * 1 2 3 26 26 H 1.09004 * 109.46737 * 59.99449 * 1 2 3 27 27 H 1.08992 * 109.47604 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47040 * 239.99570 * 2 1 3 29 29 H 1.09008 * 109.47195 * 120.00410 * 2 1 3 30 30 H 1.07994 * 126.12383 * 0.02562 * 4 3 2 31 31 H 1.07999 * 126.03955 * 180.27443 * 5 4 3 32 32 H 1.09000 * 109.47523 * 4.71191 * 7 6 5 33 33 H 1.09006 * 109.46998 * 244.71079 * 7 6 5 34 34 H 0.97003 * 120.00681 * 179.97438 * 16 15 13 35 35 H 1.08997 * 115.54755 * 274.42171 * 21 11 10 36 36 H 1.09000 * 117.50252 * 0.02562 * 22 21 11 37 37 H 1.09005 * 117.49923 * 145.01848 * 22 21 11 38 38 H 1.08999 * 117.49955 * 214.97906 * 23 21 11 39 39 H 1.09004 * 117.50118 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0760 3.2119 0.5431 6 6 2.3128 3.4723 -0.5998 7 6 2.2364 4.7880 -1.3306 8 6 2.5940 4.5794 -2.7796 9 8 2.8817 3.4756 -3.1779 10 8 2.5986 5.6209 -3.6265 11 6 2.9588 5.3470 -5.0061 12 1 2.6642 4.3296 -5.2634 13 6 2.2499 6.3198 -5.9129 14 1 1.5947 7.0692 -5.4940 15 6 2.4388 6.2537 -7.2770 16 7 3.2371 5.3415 -7.7870 17 14 1.5607 7.4601 -8.4010 18 1 1.9623 8.8460 -8.0500 19 1 1.9289 7.1799 -9.8121 20 1 0.0924 7.3129 -8.2345 21 6 4.4715 5.4988 -5.1781 22 6 5.2262 4.3458 -5.8428 23 6 5.3726 4.5908 -4.3389 24 7 1.6810 2.3746 -0.9281 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3183 1.4127 1.7365 31 1 3.7131 3.9173 1.0558 32 1 2.9353 5.4940 -0.8819 33 1 1.2236 5.1847 -1.2598 34 1 3.3698 5.2948 -8.7468 35 1 4.8227 6.5113 -5.3771 36 1 4.6450 3.4792 -6.1580 37 1 6.0741 4.5997 -6.4790 38 1 6.3168 5.0057 -3.9862 39 1 4.8878 3.8854 -3.6639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344921657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:04 Heat of formation + Delta-G solvation = 14.170052 kcal Electronic energy + Delta-G solvation = -21600.000821 eV Core-core repulsion = 18317.571028 eV Total energy + Delta-G solvation = -3282.429793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12700 -39.39421 -36.36806 -34.86396 -34.55126 -32.58010 -31.59274 -29.71023 -28.44827 -27.39564 -23.67399 -23.01317 -21.21798 -21.06336 -20.93270 -19.37096 -18.92209 -17.04515 -16.95508 -16.37909 -15.57154 -15.29062 -15.10557 -14.52164 -14.38046 -13.88274 -13.71861 -13.49705 -13.02393 -12.64221 -12.43187 -12.38979 -12.15505 -11.86559 -11.46713 -11.41581 -11.17457 -10.99242 -10.85333 -10.38053 -10.32853 -10.21825 -9.76451 -9.52780 -9.25255 -9.11911 -8.93557 -8.56910 -8.46454 -8.35216 -6.08378 -4.16053 2.00991 2.54566 2.83190 3.16940 3.31389 3.34923 3.37434 3.87171 4.36667 4.41208 4.76821 4.79189 4.87212 5.03924 5.12116 5.23837 5.29515 5.42783 5.58482 5.65670 5.77753 5.84801 5.89104 5.96350 6.03136 6.14531 6.24553 6.47222 6.63281 6.71426 6.81529 7.07826 7.10047 7.24692 7.36736 7.49869 7.71675 7.88308 7.95166 8.21871 8.76056 8.99980 9.48315 10.98327 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.004131 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.597439 B = 6776.724764 C = 7060.761738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.132 3.868 3 N -0.374 5.374 4 C 0.045 3.955 5 C -0.264 4.264 6 C 0.082 3.918 7 C -0.036 4.036 8 C 0.454 3.546 9 O -0.504 6.504 10 O -0.354 6.354 11 C 0.250 3.750 12 H 0.047 0.953 13 C -0.527 4.527 14 H 0.068 0.932 15 C 0.069 3.931 16 N -0.874 5.874 17 Si 0.906 3.094 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.229 4.229 24 N -0.256 5.256 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.170 0.830 31 H 0.147 0.853 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.264 0.736 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -7.039 17.050 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.010 3.990 3 N -0.158 5.158 4 C -0.101 4.101 5 C -0.293 4.293 6 C -0.086 4.086 7 C -0.075 4.075 8 C 0.296 3.704 9 O -0.392 6.392 10 O -0.271 6.271 11 C 0.198 3.802 12 H 0.065 0.935 13 C -0.565 4.565 14 H 0.086 0.914 15 C -0.135 4.135 16 N -0.510 5.510 17 Si 0.733 3.267 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.132 4.132 22 C -0.161 4.161 23 C -0.266 4.266 24 N -0.078 5.078 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.187 0.813 31 H 0.165 0.835 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.525 -8.152 15.876 17.912 hybrid contribution 0.416 0.815 -0.186 0.934 sum -1.109 -7.337 15.690 17.357 Atomic orbital electron populations 1.22050 0.93893 1.02667 1.03689 1.21637 0.96043 0.77749 1.03531 1.48747 1.35884 1.10158 1.20968 1.22448 0.96248 0.94864 0.96492 1.21316 1.09325 0.96861 1.01807 1.21613 0.97283 0.94199 0.95459 1.19631 1.05489 0.92867 0.89527 1.22977 0.74814 0.83811 0.88819 1.90608 1.44208 1.26022 1.78409 1.86461 1.78689 1.37605 1.24334 1.20158 0.89475 0.98689 0.71926 0.93485 1.20890 1.28210 1.17038 0.90360 0.91359 1.24873 0.95154 0.95904 0.97591 1.70041 1.35486 1.32913 1.12537 0.86433 0.79962 0.81144 0.79130 1.20027 1.21182 1.20081 1.22588 0.94341 0.94767 1.01511 1.22349 1.01143 1.00864 0.91785 1.23277 1.01401 1.06095 0.95814 1.77451 1.23157 0.96206 1.11004 0.92237 0.90836 0.90891 0.89781 0.88943 0.81267 0.83531 0.86413 0.86769 0.92659 0.89391 0.89445 0.90887 0.91135 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.10 37.16 0.38 -1.10 16 2 C 0.13 1.24 7.23 -4.05 -0.03 1.21 16 3 N -0.37 -5.05 3.68 -61.37 -0.23 -5.28 16 4 C 0.04 0.52 11.45 -17.22 -0.20 0.32 16 5 C -0.26 -3.43 10.72 -40.02 -0.43 -3.86 16 6 C 0.08 1.32 6.02 -82.41 -0.50 0.82 16 7 C -0.04 -0.56 6.39 -29.04 -0.19 -0.74 16 8 C 0.45 9.76 7.17 36.00 0.26 10.02 16 9 O -0.50 -12.30 12.61 -18.76 -0.24 -12.53 16 10 O -0.35 -8.55 9.84 -39.26 -0.39 -8.93 16 11 C 0.25 6.76 2.25 -27.88 -0.06 6.70 16 12 H 0.05 1.43 6.91 -51.93 -0.36 1.07 16 13 C -0.53 -14.92 8.88 -34.44 -0.31 -15.23 16 14 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 15 C 0.07 1.90 5.30 -17.82 -0.09 1.81 16 16 N -0.87 -24.72 11.43 55.43 0.63 -24.09 16 17 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.11 -2.85 4.47 -90.62 -0.41 -3.26 16 22 C -0.12 -2.97 9.04 -26.70 -0.24 -3.21 16 23 C -0.23 -5.14 9.80 -26.70 -0.26 -5.40 16 24 N -0.26 -4.50 11.77 33.67 0.40 -4.11 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.54 8.07 -51.92 -0.42 0.13 16 30 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.12 1.47 8.12 -51.93 -0.42 1.05 16 33 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.09 2.27 8.11 -51.93 -0.42 1.85 16 36 H 0.09 2.25 8.05 -51.93 -0.42 1.83 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 2.21 5.37 -51.93 -0.28 1.93 16 LS Contribution 332.87 15.07 5.02 5.02 Total: -1.00 -33.93 332.87 -7.57 -41.50 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.67 Total: 4.12 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -2.07 Total: -11.93 kcal Atomic # 7 Polarization: -34.28 SS G_CDS: 0.80 Total: -33.47 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.62 Total: -21.47 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.93 -7.57 -41.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344921657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.666 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds