Wall clock time and date at job start Mon Mar 30 2020 23:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47840 * 2 1 4 4 C 1.34955 * 126.03844 * 124.96764 * 3 2 1 5 5 C 1.35309 * 107.74347 * 179.75538 * 4 3 2 6 6 C 1.39870 * 107.92161 * 0.39930 * 5 4 3 7 7 C 1.50703 * 125.89754 * 179.86466 * 6 5 4 8 8 C 1.50696 * 109.47478 * 124.71739 * 7 6 5 9 9 O 1.20833 * 119.99655 * 359.97438 * 8 7 6 10 10 O 1.34231 * 120.00640 * 180.27539 * 8 7 6 11 11 C 1.45193 * 117.00126 * 179.71955 * 10 8 7 12 12 H 1.08997 * 109.47373 * 30.00272 * 11 10 8 13 13 C 1.50706 * 109.46848 * 149.99911 * 11 10 8 14 14 H 1.08002 * 119.99636 * 0.02562 * 13 11 10 15 15 C 1.37873 * 119.99798 * 179.97438 * 13 11 10 16 16 N 1.31508 * 120.00508 * 0.02562 * 15 13 11 17 17 Si 1.86809 * 119.99737 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47155 * 60.00373 * 17 15 13 19 19 H 1.48496 * 109.47192 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47113 * 300.00264 * 17 15 13 21 21 C 1.53002 * 109.47377 * 269.99754 * 11 10 8 22 22 C 1.52994 * 117.49822 * 128.74842 * 21 11 10 23 23 C 1.52996 * 117.49740 * 60.08768 * 21 11 10 24 24 N 1.30831 * 108.20400 * 359.60003 * 6 5 4 25 25 H 1.08997 * 109.47056 * 300.00087 * 1 2 3 26 26 H 1.09004 * 109.46737 * 59.99449 * 1 2 3 27 27 H 1.08992 * 109.47604 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47040 * 239.99570 * 2 1 3 29 29 H 1.09008 * 109.47195 * 120.00410 * 2 1 3 30 30 H 1.07994 * 126.12383 * 0.02562 * 4 3 2 31 31 H 1.07999 * 126.03955 * 180.27443 * 5 4 3 32 32 H 1.09000 * 109.47523 * 4.71191 * 7 6 5 33 33 H 1.09006 * 109.46998 * 244.71079 * 7 6 5 34 34 H 0.97003 * 120.00681 * 179.97438 * 16 15 13 35 35 H 1.08997 * 115.54755 * 274.42171 * 21 11 10 36 36 H 1.09000 * 117.50252 * 0.02562 * 22 21 11 37 37 H 1.09005 * 117.49923 * 145.01848 * 22 21 11 38 38 H 1.08999 * 117.49955 * 214.97906 * 23 21 11 39 39 H 1.09004 * 117.50118 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3811 0.0000 4 6 2.8728 1.9211 0.8943 5 6 3.0760 3.2119 0.5431 6 6 2.3128 3.4723 -0.5998 7 6 2.2364 4.7880 -1.3306 8 6 2.5940 4.5794 -2.7796 9 8 2.8817 3.4756 -3.1779 10 8 2.5986 5.6209 -3.6265 11 6 2.9588 5.3470 -5.0061 12 1 2.6642 4.3296 -5.2634 13 6 2.2499 6.3198 -5.9129 14 1 1.5947 7.0692 -5.4940 15 6 2.4388 6.2537 -7.2770 16 7 3.2371 5.3415 -7.7870 17 14 1.5607 7.4601 -8.4010 18 1 1.9623 8.8460 -8.0500 19 1 1.9289 7.1799 -9.8121 20 1 0.0924 7.3129 -8.2345 21 6 4.4715 5.4988 -5.1781 22 6 5.2262 4.3458 -5.8428 23 6 5.3726 4.5908 -4.3389 24 7 1.6810 2.3746 -0.9281 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3183 1.4127 1.7365 31 1 3.7131 3.9173 1.0558 32 1 2.9353 5.4940 -0.8819 33 1 1.2236 5.1847 -1.2598 34 1 3.3698 5.2948 -8.7468 35 1 4.8227 6.5113 -5.3771 36 1 4.6450 3.4792 -6.1580 37 1 6.0741 4.5997 -6.4790 38 1 6.3168 5.0057 -3.9862 39 1 4.8878 3.8854 -3.6639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344921657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:04 Heat of formation + Delta-G solvation = -6.154615 kcal Electronic energy + Delta-G solvation = -21600.882165 eV Core-core repulsion = 18317.571028 eV Total energy + Delta-G solvation = -3283.311137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.17016 -41.16401 -38.24718 -36.65795 -35.58841 -34.69960 -32.69436 -30.78411 -30.00506 -28.93034 -25.40015 -24.28109 -23.09526 -22.51466 -21.98943 -21.14348 -20.35319 -18.88349 -18.35234 -17.87908 -17.26740 -16.95529 -16.36653 -16.24623 -15.71895 -15.24279 -14.96940 -14.79015 -14.33875 -14.23901 -13.75699 -13.45920 -13.35745 -13.19608 -12.96056 -12.93301 -12.87522 -12.72788 -12.27498 -12.21056 -12.15762 -11.78906 -11.46022 -11.34814 -11.13861 -10.92910 -10.59159 -10.42656 -10.19172 -9.43009 -8.20131 -6.37522 1.01858 1.42432 1.45844 1.47437 1.53278 1.66269 1.74041 2.25736 2.49826 3.06964 3.24821 3.48701 3.85742 4.01145 4.08289 4.10161 4.18696 4.31061 4.31439 4.35627 4.45244 4.51064 4.67204 4.74280 4.80263 4.81926 4.90817 4.95602 5.10376 5.14943 5.23528 5.27446 5.39544 5.49845 5.58165 5.72070 5.89019 6.20301 6.27884 6.66797 6.84965 7.09454 7.33210 8.85998 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024521 B = 0.004131 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.597439 B = 6776.724764 C = 7060.761738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.379 5.379 4 C 0.058 3.942 5 C -0.277 4.277 6 C 0.058 3.942 7 C -0.025 4.025 8 C 0.448 3.552 9 O -0.537 6.537 10 O -0.362 6.362 11 C 0.256 3.744 12 H 0.000 1.000 13 C -0.558 4.558 14 H 0.065 0.935 15 C 0.025 3.975 16 N -0.897 5.897 17 Si 0.975 3.025 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.272 1.272 21 C -0.128 4.128 22 C -0.125 4.125 23 C -0.197 4.197 24 N -0.319 5.319 25 H 0.061 0.939 26 H 0.036 0.964 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.139 0.861 30 H 0.220 0.780 31 H 0.173 0.827 32 H 0.155 0.845 33 H 0.131 0.869 34 H 0.267 0.733 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.053 -6.798 19.084 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.002 3.998 3 N -0.162 5.162 4 C -0.088 4.088 5 C -0.306 4.306 6 C -0.108 4.108 7 C -0.064 4.064 8 C 0.292 3.708 9 O -0.428 6.428 10 O -0.279 6.279 11 C 0.202 3.798 12 H 0.018 0.982 13 C -0.595 4.595 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.532 5.532 17 Si 0.799 3.201 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.197 1.197 21 C -0.147 4.147 22 C -0.162 4.162 23 C -0.234 4.234 24 N -0.142 5.142 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.157 0.843 30 H 0.236 0.764 31 H 0.191 0.809 32 H 0.172 0.828 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.124 0.876 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.741 -7.914 17.931 19.613 hybrid contribution 0.146 0.603 -0.743 0.968 sum -0.595 -7.310 17.188 18.687 Atomic orbital electron populations 1.21993 0.93844 1.03875 1.01926 1.22015 0.96228 0.76317 1.05274 1.49081 1.36004 1.10676 1.20479 1.23254 0.94459 0.94524 0.96557 1.21701 1.09509 0.98265 1.01141 1.21828 0.98305 0.93900 0.96757 1.19783 1.07244 0.94262 0.85119 1.24155 0.73506 0.82691 0.90484 1.90587 1.45716 1.27164 1.79317 1.86454 1.79152 1.38848 1.23440 1.19779 0.90727 0.95763 0.73490 0.98203 1.21187 1.29213 1.17589 0.91510 0.91699 1.25738 0.95664 0.97558 0.98768 1.70166 1.36165 1.33989 1.12921 0.85360 0.78671 0.79027 0.77048 1.18908 1.20370 1.19731 1.22396 0.93605 0.94846 1.03878 1.22259 1.01133 0.99372 0.93420 1.23242 1.01702 1.04057 0.94417 1.77347 1.25344 0.97853 1.13677 0.92008 0.94468 0.88175 0.90804 0.84332 0.76380 0.80921 0.82767 0.85146 0.92449 0.89925 0.92210 0.89150 0.87602 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.10 71.98 0.73 -2.00 16 2 C 0.12 2.10 7.23 86.38 0.62 2.72 16 3 N -0.38 -9.75 3.68 -348.06 -1.28 -11.03 16 4 C 0.06 1.15 11.45 83.54 0.96 2.10 16 5 C -0.28 -6.56 10.72 21.99 0.24 -6.33 16 6 C 0.06 1.84 6.02 43.10 0.26 2.10 16 7 C -0.03 -0.78 6.39 29.10 0.19 -0.60 16 8 C 0.45 19.78 7.17 71.23 0.51 20.29 16 9 O -0.54 -27.47 12.61 21.94 0.28 -27.20 16 10 O -0.36 -18.03 9.84 -51.42 -0.51 -18.54 16 11 C 0.26 14.42 2.25 29.85 0.07 14.49 16 12 H 0.00 0.01 6.91 -2.39 -0.02 0.00 16 13 C -0.56 -32.52 8.88 25.60 0.23 -32.30 16 14 H 0.06 3.71 7.81 -2.91 -0.02 3.69 16 15 C 0.02 1.38 5.30 84.65 0.45 1.83 16 16 N -0.90 -51.83 11.43 21.44 0.25 -51.59 16 17 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C -0.13 -6.60 4.47 -10.80 -0.05 -6.65 16 22 C -0.12 -6.07 9.04 30.62 0.28 -5.79 16 23 C -0.20 -8.78 9.80 30.62 0.30 -8.48 16 24 N -0.32 -11.38 11.77 -47.38 -0.56 -11.94 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.14 1.09 8.07 -2.38 -0.02 1.07 16 30 H 0.22 1.93 8.06 -2.91 -0.02 1.91 16 31 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 32 H 0.15 3.53 8.12 -2.39 -0.02 3.52 16 33 H 0.13 3.54 8.14 -2.38 -0.02 3.52 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.08 4.31 8.11 -2.39 -0.02 4.29 16 36 H 0.06 3.22 8.05 -2.39 -0.02 3.20 16 37 H 0.09 4.03 8.14 -2.38 -0.02 4.01 16 38 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 39 H 0.08 3.88 5.37 -2.39 -0.01 3.87 16 Total: -1.00 -78.31 332.87 6.01 -72.30 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: 1.04 Total: 20.73 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: 4.77 Total: -18.60 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -1.59 Total: -74.56 kcal Atomic # 8 Polarization: -45.51 SS G_CDS: -0.23 Total: -45.74 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.31 6.01 -72.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344921657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.144 kcal (2) G-P(sol) polarization free energy of solvation -78.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds