Wall clock time and date at job start Tue Mar 31 2020 01:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.20831 * 119.99523 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00353 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99931 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47265 * 330.00028 * 11 10 8 13 13 C 1.50698 * 109.47060 * 209.99887 * 11 10 8 14 14 H 1.08004 * 120.00278 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00277 * 179.97438 * 13 11 10 16 16 N 1.31518 * 119.99669 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00303 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46744 * 60.00875 * 17 15 13 19 19 H 1.48502 * 109.47215 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47735 * 300.00719 * 17 15 13 21 21 C 1.52995 * 109.47474 * 89.99995 * 11 10 8 22 22 C 1.53005 * 117.49714 * 8.74348 * 21 11 10 23 23 C 1.53002 * 117.49669 * 300.08997 * 21 11 10 24 24 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 25 25 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 26 26 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 27 27 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 28 28 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 29 29 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 30 30 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 31 31 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 32 32 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 33 33 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 34 34 H 0.97003 * 119.99903 * 179.97438 * 16 15 13 35 35 H 1.09004 * 115.55384 * 154.41834 * 21 11 10 36 36 H 1.08999 * 117.49808 * 0.02562 * 22 21 11 37 37 H 1.09008 * 117.49757 * 145.01789 * 22 21 11 38 38 H 1.09002 * 117.49636 * 214.97458 * 23 21 11 39 39 H 1.08995 * 117.50050 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7284 -3.3561 0.3393 10 8 6.0338 -4.4080 2.1543 11 6 7.2286 -5.2310 2.0956 12 1 7.5420 -5.3431 1.0576 13 6 6.9330 -6.5881 2.6804 14 1 5.9458 -6.8101 3.0581 15 6 7.9225 -7.5468 2.7324 16 7 9.1246 -7.2767 2.2721 17 14 7.5564 -9.2287 3.4580 18 1 6.4695 -9.8770 2.6809 19 1 8.7783 -10.0705 3.3978 20 1 7.1303 -9.0758 4.8723 21 6 8.3478 -4.5632 2.8969 22 6 7.9798 -3.3422 3.7422 23 6 8.7945 -3.1672 2.4583 24 7 2.2892 -1.1327 0.0055 25 1 -0.3633 0.0046 1.0276 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.9281 2.1194 0.0004 29 1 4.4211 1.2964 -0.0061 30 1 4.7853 -2.1932 -0.9212 31 1 5.6483 -1.0125 0.0937 32 1 4.6362 -2.0168 2.1224 33 1 3.7733 -3.1974 1.1076 34 1 9.8209 -7.9511 2.3090 35 1 9.1108 -5.2356 3.2894 36 1 6.9402 -3.0149 3.7278 37 1 8.5007 -3.2111 4.6907 38 1 9.8512 -2.9210 2.5626 39 1 8.2913 -2.7247 1.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350301649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:55 Heat of formation + Delta-G solvation = 10.544364 kcal Electronic energy + Delta-G solvation = -21197.254440 eV Core-core repulsion = 17914.667425 eV Total energy + Delta-G solvation = -3282.587015 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.27358 -39.70171 -36.61362 -34.75466 -34.44936 -32.76924 -31.94854 -30.08418 -28.10850 -27.00752 -24.50954 -23.11956 -21.42136 -21.28883 -20.46916 -19.47190 -18.85832 -17.24594 -16.84093 -16.45234 -15.94094 -15.66584 -15.16027 -14.68414 -14.29222 -14.15253 -13.81726 -13.48463 -13.15938 -12.79609 -12.59492 -12.36678 -12.15033 -11.96556 -11.41915 -11.28031 -11.16852 -11.04662 -10.91173 -10.57133 -10.46725 -10.27298 -10.03923 -9.62817 -9.43612 -9.30231 -9.06024 -8.67462 -8.48220 -8.39697 -6.15126 -4.21986 1.75976 2.37531 2.68860 3.05492 3.29297 3.32713 3.35066 3.73143 4.31603 4.37151 4.62724 4.84760 4.89404 4.98363 5.10789 5.12877 5.17398 5.24615 5.46006 5.64552 5.72742 5.85867 5.89916 5.92678 6.13614 6.15788 6.17617 6.20631 6.50410 6.57946 6.73721 6.86614 6.96725 7.06113 7.25059 7.61733 7.63502 7.64959 7.89922 8.16907 8.67558 8.92873 9.42332 10.92039 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.003568 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.099042 B = 7845.005588 C = 8473.105199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.381 5.381 3 C 0.049 3.951 4 C -0.266 4.266 5 C 0.081 3.919 6 C -0.026 4.026 7 C -0.109 4.109 8 C 0.452 3.548 9 O -0.518 6.518 10 O -0.353 6.353 11 C 0.248 3.752 12 H 0.052 0.948 13 C -0.518 4.518 14 H 0.069 0.931 15 C 0.064 3.936 16 N -0.886 5.886 17 Si 0.910 3.090 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.116 4.116 22 C -0.195 4.195 23 C -0.210 4.210 24 N -0.291 5.291 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.172 0.828 29 H 0.148 0.852 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.266 0.734 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 16.112 -2.879 21.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.163 5.163 3 C -0.097 4.097 4 C -0.296 4.296 5 C -0.085 4.085 6 C -0.065 4.065 7 C -0.148 4.148 8 C 0.296 3.704 9 O -0.409 6.409 10 O -0.269 6.269 11 C 0.195 3.805 12 H 0.070 0.930 13 C -0.556 4.556 14 H 0.087 0.913 15 C -0.139 4.139 16 N -0.523 5.523 17 Si 0.737 3.263 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.134 4.134 22 C -0.232 4.232 23 C -0.247 4.247 24 N -0.114 5.114 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.189 0.811 29 H 0.166 0.834 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.146 0.854 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.798 15.029 -3.132 20.641 hybrid contribution 0.500 0.013 0.403 0.642 sum -13.297 15.042 -2.729 20.261 Atomic orbital electron populations 1.21823 0.74416 1.04349 1.03299 1.48529 1.06564 1.03902 1.57323 1.22507 0.91242 0.93383 1.02526 1.21462 0.97077 0.94450 1.16576 1.22333 0.93204 0.94031 0.98976 1.19818 0.92308 0.95362 0.99017 1.21255 0.96239 0.96829 1.00477 1.23337 0.87099 0.80245 0.79743 1.90581 1.43615 1.68878 1.37816 1.86494 1.47664 1.44327 1.48378 1.20116 0.76749 0.86319 0.97312 0.92991 1.20932 0.98289 0.94699 1.41715 0.91256 1.24901 0.94700 0.99074 0.95201 1.69976 1.02284 1.34848 1.45209 0.86368 0.77709 0.82584 0.79685 1.19972 1.21082 1.19942 1.23014 1.01466 0.88531 1.00431 1.22798 0.99730 1.06405 0.94251 1.23150 0.98986 1.04254 0.98269 1.77365 1.01375 1.07596 1.25085 0.90826 0.89675 0.89298 0.81060 0.83381 0.89176 0.88944 0.88388 0.87810 0.92388 0.85363 0.89791 0.90507 0.90598 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.47 59.85 0.69 1.31 16 2 N -0.38 -4.05 4.01 -68.16 -0.27 -4.33 16 3 C 0.05 0.45 11.49 -17.22 -0.20 0.26 16 4 C -0.27 -2.96 10.72 -40.01 -0.43 -3.39 16 5 C 0.08 1.09 6.49 -82.41 -0.53 0.55 16 6 C -0.03 -0.36 5.08 -27.89 -0.14 -0.50 16 7 C -0.11 -1.71 5.77 -27.89 -0.16 -1.87 16 8 C 0.45 9.33 6.91 36.01 0.25 9.58 16 9 O -0.52 -11.77 13.03 -18.75 -0.24 -12.01 16 10 O -0.35 -8.37 8.38 -39.24 -0.33 -8.70 16 11 C 0.25 6.62 2.41 -27.89 -0.07 6.56 16 12 H 0.05 1.55 7.16 -51.93 -0.37 1.18 16 13 C -0.52 -14.60 8.90 -34.44 -0.31 -14.90 16 14 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 15 C 0.06 1.76 5.20 -17.82 -0.09 1.67 16 16 N -0.89 -25.18 11.59 55.43 0.64 -24.54 16 17 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 21 C -0.12 -2.90 5.27 -90.62 -0.48 -3.38 16 22 C -0.19 -4.15 9.80 -26.69 -0.26 -4.42 16 23 C -0.21 -4.61 9.85 -26.70 -0.26 -4.87 16 24 N -0.29 -4.09 12.54 33.67 0.42 -3.67 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.17 0.87 8.06 -52.48 -0.42 0.45 16 29 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.09 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.13 3.49 6.46 -51.93 -0.34 3.16 16 36 H 0.08 1.75 6.91 -51.93 -0.36 1.39 16 37 H 0.08 1.49 8.14 -51.92 -0.42 1.07 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.09 2.13 5.37 -51.93 -0.28 1.85 16 LS Contribution 331.09 15.07 4.99 4.99 Total: -1.00 -32.86 331.09 -7.35 -40.21 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.53 Total: 5.31 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -2.00 Total: -13.41 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.79 Total: -32.53 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.57 Total: -20.72 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.86 -7.35 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.755 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds