Wall clock time and date at job start Tue Mar 31 2020 01:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34951 * 126.03602 * 2 1 4 4 C 1.35312 * 107.74772 * 180.15058 * 3 2 1 5 5 C 1.39869 * 107.91889 * 359.61173 * 4 3 2 6 6 C 1.50699 * 125.90295 * 180.22479 * 5 4 3 7 7 C 1.52991 * 109.47655 * 124.99832 * 6 5 4 8 8 C 1.50699 * 109.47655 * 179.97438 * 7 6 5 9 9 O 1.20831 * 119.99523 * 0.02562 * 8 7 6 10 10 O 1.34224 * 120.00353 * 179.97438 * 8 7 6 11 11 C 1.45202 * 116.99931 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47265 * 330.00028 * 11 10 8 13 13 C 1.50698 * 109.47060 * 209.99887 * 11 10 8 14 14 H 1.08004 * 120.00278 * 0.02562 * 13 11 10 15 15 C 1.37877 * 120.00277 * 179.97438 * 13 11 10 16 16 N 1.31518 * 119.99669 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 120.00303 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.46744 * 60.00875 * 17 15 13 19 19 H 1.48502 * 109.47215 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47735 * 300.00719 * 17 15 13 21 21 C 1.52995 * 109.47474 * 89.99995 * 11 10 8 22 22 C 1.53005 * 117.49714 * 8.74348 * 21 11 10 23 23 C 1.53002 * 117.49669 * 300.08997 * 21 11 10 24 24 N 1.30837 * 108.20188 * 0.23962 * 5 4 3 25 25 H 1.08999 * 109.47098 * 270.25891 * 1 2 3 26 26 H 1.08998 * 109.47303 * 30.25669 * 1 2 3 27 27 H 1.08994 * 109.47129 * 150.25391 * 1 2 3 28 28 H 1.08008 * 126.12704 * 0.02562 * 3 2 1 29 29 H 1.08002 * 126.04491 * 179.88067 * 4 3 2 30 30 H 1.09002 * 109.46897 * 245.00208 * 6 5 4 31 31 H 1.09007 * 109.46619 * 4.99549 * 6 5 4 32 32 H 1.09002 * 109.47275 * 300.00144 * 7 6 5 33 33 H 1.09007 * 109.47338 * 60.00157 * 7 6 5 34 34 H 0.97003 * 119.99903 * 179.97438 * 16 15 13 35 35 H 1.09004 * 115.55384 * 154.41834 * 21 11 10 36 36 H 1.08999 * 117.49808 * 0.02562 * 22 21 11 37 37 H 1.09008 * 117.49757 * 145.01789 * 22 21 11 38 38 H 1.09002 * 117.49636 * 214.97458 * 23 21 11 39 39 H 1.08995 * 117.50050 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 3.5347 -0.7320 0.0035 6 6 4.7497 -1.6235 0.0075 7 6 4.6719 -2.5864 1.1938 8 6 5.8866 -3.4784 1.1974 9 8 6.7284 -3.3561 0.3393 10 8 6.0338 -4.4080 2.1543 11 6 7.2286 -5.2310 2.0956 12 1 7.5420 -5.3431 1.0576 13 6 6.9330 -6.5881 2.6804 14 1 5.9458 -6.8101 3.0581 15 6 7.9225 -7.5468 2.7324 16 7 9.1246 -7.2767 2.2721 17 14 7.5564 -9.2287 3.4580 18 1 6.4695 -9.8770 2.6809 19 1 8.7783 -10.0705 3.3978 20 1 7.1303 -9.0758 4.8723 21 6 8.3478 -4.5632 2.8969 22 6 7.9798 -3.3422 3.7422 23 6 8.7945 -3.1672 2.4583 24 7 2.2892 -1.1327 0.0055 25 1 -0.3633 0.0046 1.0276 26 1 -0.3634 0.8876 -0.5178 27 1 -0.3633 -0.8922 -0.5099 28 1 1.9281 2.1194 0.0004 29 1 4.4211 1.2964 -0.0061 30 1 4.7853 -2.1932 -0.9212 31 1 5.6483 -1.0125 0.0937 32 1 4.6362 -2.0168 2.1224 33 1 3.7733 -3.1974 1.1076 34 1 9.8209 -7.9511 2.3090 35 1 9.1108 -5.2356 3.2894 36 1 6.9402 -3.0149 3.7278 37 1 8.5007 -3.2111 4.6907 38 1 9.8512 -2.9210 2.5626 39 1 8.2913 -2.7247 1.5987 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350301649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:20:54 Heat of formation + Delta-G solvation = -8.461797 kcal Electronic energy + Delta-G solvation = -21198.078609 eV Core-core repulsion = 17914.667425 eV Total energy + Delta-G solvation = -3283.411184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.10594 -41.46129 -38.40920 -36.50617 -35.56236 -34.86451 -32.91309 -30.92532 -30.01098 -28.05881 -25.79935 -24.92413 -23.17405 -22.22498 -21.91851 -20.76517 -20.42553 -18.87627 -18.44630 -17.72119 -17.65815 -17.09259 -16.53689 -16.12847 -15.90083 -15.24821 -14.97538 -14.57446 -14.40086 -14.23914 -13.73701 -13.52414 -13.39690 -13.19631 -13.13558 -12.90066 -12.83776 -12.76725 -12.38730 -12.22794 -12.18044 -11.96359 -11.49015 -11.35560 -11.31160 -11.01259 -10.46273 -10.40432 -10.18162 -9.45694 -8.25763 -6.42218 0.97275 1.36833 1.41866 1.45499 1.53115 1.70051 1.78908 2.11538 2.44133 3.02070 3.17733 3.57781 3.86032 3.87044 4.09200 4.11715 4.18637 4.27701 4.31576 4.32577 4.47988 4.54073 4.66843 4.73449 4.78630 4.85499 4.93886 4.98596 5.02310 5.05602 5.18461 5.27215 5.32861 5.53528 5.58510 5.69637 5.93686 6.14446 6.22821 6.62547 6.78486 7.01493 7.28569 8.81350 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027149 B = 0.003568 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.099042 B = 7845.005588 C = 8473.105199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.065 3.935 4 C -0.288 4.288 5 C 0.063 3.937 6 C -0.018 4.018 7 C -0.093 4.093 8 C 0.448 3.552 9 O -0.542 6.542 10 O -0.361 6.361 11 C 0.254 3.746 12 H 0.006 0.994 13 C -0.548 4.548 14 H 0.065 0.935 15 C 0.019 3.981 16 N -0.912 5.912 17 Si 0.978 3.022 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.148 4.148 22 C -0.167 4.167 23 C -0.197 4.197 24 N -0.335 5.335 25 H 0.085 0.915 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.218 0.782 29 H 0.162 0.838 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.269 0.731 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.857 17.899 -1.898 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.165 5.165 3 C -0.082 4.082 4 C -0.317 4.317 5 C -0.102 4.102 6 C -0.057 4.057 7 C -0.131 4.131 8 C 0.293 3.707 9 O -0.433 6.433 10 O -0.277 6.277 11 C 0.201 3.799 12 H 0.024 0.976 13 C -0.585 4.585 14 H 0.083 0.917 15 C -0.181 4.181 16 N -0.550 5.550 17 Si 0.802 3.198 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.167 4.167 22 C -0.204 4.204 23 C -0.234 4.234 24 N -0.159 5.159 25 H 0.103 0.897 26 H 0.138 0.862 27 H 0.102 0.898 28 H 0.234 0.766 29 H 0.180 0.820 30 H 0.093 0.907 31 H 0.115 0.885 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.379 16.830 -2.157 22.900 hybrid contribution 0.904 -0.454 0.024 1.011 sum -14.475 16.376 -2.134 21.961 Atomic orbital electron populations 1.22189 0.72070 1.05878 1.04562 1.48907 1.07964 1.03441 1.56202 1.23196 0.90354 0.94829 0.99788 1.21749 0.98774 0.93534 1.17617 1.22217 0.92693 0.95013 1.00257 1.19676 0.93483 0.95078 0.97457 1.21290 0.93344 0.96182 1.02297 1.24325 0.88175 0.79659 0.78521 1.90564 1.44954 1.69358 1.38453 1.86483 1.46586 1.45002 1.49674 1.19708 0.78274 0.87083 0.94834 0.97594 1.21236 0.98478 0.96159 1.42640 0.91664 1.25792 0.94298 1.02867 0.95172 1.70104 1.03104 1.36110 1.45663 0.85306 0.77801 0.77577 0.79163 1.19434 1.20239 1.18903 1.22705 1.01248 0.89627 1.03157 1.22876 1.00288 1.02404 0.94818 1.23142 1.00195 1.01457 0.98641 1.77262 1.02050 1.09955 1.26673 0.89676 0.86160 0.89813 0.76559 0.81992 0.90681 0.88487 0.86334 0.87417 0.92155 0.87917 0.89150 0.87966 0.88795 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.87 11.47 127.77 1.47 2.34 16 2 N -0.38 -7.27 4.01 -369.57 -1.48 -8.75 16 3 C 0.06 0.99 11.49 83.54 0.96 1.95 16 4 C -0.29 -5.83 10.72 21.99 0.24 -5.60 16 5 C 0.06 1.65 6.49 43.10 0.28 1.93 16 6 C -0.02 -0.50 5.08 29.84 0.15 -0.35 16 7 C -0.09 -2.89 5.77 29.84 0.17 -2.72 16 8 C 0.45 18.91 6.91 71.24 0.49 19.40 16 9 O -0.54 -25.53 13.03 21.95 0.29 -25.24 16 10 O -0.36 -17.60 8.38 -51.36 -0.43 -18.03 16 11 C 0.25 14.16 2.41 29.85 0.07 14.23 16 12 H 0.01 0.40 7.16 -2.39 -0.02 0.38 16 13 C -0.55 -31.79 8.90 25.60 0.23 -31.56 16 14 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 15 C 0.02 1.06 5.20 84.65 0.44 1.50 16 16 N -0.91 -53.30 11.59 21.45 0.25 -53.05 16 17 Si 0.98 43.74 29.54 68.60 2.03 45.76 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 21 C -0.15 -7.59 5.27 -10.79 -0.06 -7.65 16 22 C -0.17 -6.92 9.80 30.62 0.30 -6.62 16 23 C -0.20 -8.64 9.85 30.62 0.30 -8.33 16 24 N -0.34 -9.15 12.54 -47.39 -0.59 -9.74 16 25 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.22 1.12 8.06 -2.91 -0.02 1.09 16 29 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 30 H 0.07 2.30 8.10 -2.39 -0.02 2.28 16 31 H 0.10 2.59 8.08 -2.38 -0.02 2.57 16 32 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.11 3.30 8.14 -2.38 -0.02 3.28 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.10 5.78 6.46 -2.38 -0.02 5.76 16 36 H 0.09 3.62 6.91 -2.39 -0.02 3.61 16 37 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 38 H 0.09 3.73 8.14 -2.39 -0.02 3.71 16 39 H 0.09 3.97 5.37 -2.39 -0.01 3.96 16 Total: -1.00 -74.03 331.09 6.14 -67.89 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 1.04 Total: 22.65 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 5.04 Total: -21.49 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.83 Total: -71.55 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -0.14 Total: -43.27 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -74.03 6.14 -67.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350301649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.432 kcal (2) G-P(sol) polarization free energy of solvation -74.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds