Wall clock time and date at job start Tue Mar 31 2020 01:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35914 * 117.00200 * 2 1 4 4 C 1.38851 * 119.97882 * 359.72635 * 3 2 1 5 5 C 1.38253 * 120.23520 * 179.72391 * 4 3 2 6 6 C 1.38007 * 120.20376 * 0.54938 * 5 4 3 7 7 C 1.39556 * 119.96784 * 359.72747 * 6 5 4 8 8 C 1.47857 * 120.11624 * 180.02562 * 7 6 5 9 9 O 1.21560 * 120.00028 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00349 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00426 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47433 * 179.97438 * 11 10 8 13 13 N 1.46490 * 109.47295 * 179.97438 * 12 11 10 14 14 C 1.46497 * 120.00542 * 270.00054 * 13 12 11 15 15 C 1.36945 * 120.00095 * 89.99927 * 13 12 11 16 16 H 1.08007 * 119.99543 * 22.34477 * 15 13 12 17 17 C 1.38806 * 120.00028 * 202.34659 * 15 13 12 18 18 N 1.31616 * 120.00366 * 11.34812 * 17 15 13 19 19 Si 1.86806 * 119.99777 * 191.34336 * 17 15 13 20 20 H 1.48502 * 109.46953 * 90.00554 * 19 17 15 21 21 H 1.48505 * 109.47097 * 209.99965 * 19 17 15 22 22 H 1.48493 * 109.47215 * 329.99927 * 19 17 15 23 23 C 1.38448 * 119.99162 * 179.97438 * 3 2 1 24 24 H 1.09009 * 109.47068 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47289 * 299.99417 * 1 2 3 26 26 H 1.08993 * 109.47344 * 60.00172 * 1 2 3 27 27 H 1.07998 * 119.88618 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.89409 * 180.25297 * 5 4 3 29 29 H 1.08005 * 120.01364 * 179.74276 * 6 5 4 30 30 H 0.97004 * 120.00123 * 359.97438 * 10 8 7 31 31 H 1.08997 * 109.47050 * 300.00135 * 11 10 8 32 32 H 1.08998 * 109.46515 * 59.99837 * 11 10 8 33 33 H 1.09010 * 109.47025 * 300.00382 * 12 11 10 34 34 H 1.09001 * 109.46879 * 59.99847 * 12 11 10 35 35 H 1.09001 * 109.47163 * 94.20216 * 14 13 12 36 36 H 1.08999 * 109.47434 * 214.21200 * 14 13 12 37 37 H 1.09005 * 109.46479 * 334.21264 * 14 13 12 38 38 H 0.96996 * 120.00308 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.09846 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3752 -0.0057 5 6 1.9115 3.6098 0.0000 6 6 3.2891 3.6931 0.0000 7 6 4.0579 2.5284 0.0000 8 6 5.5340 2.6138 0.0006 9 8 6.2016 1.5980 0.0011 10 7 6.1394 3.8179 0.0006 11 6 7.6020 3.9026 0.0018 12 6 8.0278 5.3721 0.0010 13 7 9.4903 5.4567 0.0027 14 6 10.2201 5.5002 1.2723 15 6 10.1754 5.4951 -1.1824 16 1 9.6776 5.8216 -2.0836 17 6 11.5096 5.1144 -1.2254 18 7 12.0550 4.5094 -0.1917 19 14 12.5309 5.4607 -2.7508 20 1 13.1729 6.7938 -2.6244 21 1 13.5788 4.4181 -2.8921 22 1 11.6529 5.4455 -3.9483 23 6 3.4286 1.2832 0.0005 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2110 2.3162 -0.0098 28 1 1.3176 4.5119 -0.0004 29 1 3.7719 4.6593 0.0003 30 1 5.6067 4.6286 -0.0001 31 1 7.9936 3.4109 0.8923 32 1 7.9950 3.4102 -0.8877 33 1 7.6361 5.8634 -0.8898 34 1 7.6347 5.8648 0.8902 35 1 10.5254 4.4915 1.5506 36 1 11.1029 6.1299 1.1625 37 1 9.5746 5.9115 2.0484 38 1 12.9872 4.2430 -0.2219 39 1 4.0182 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480940188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:29 Heat of formation + Delta-G solvation = -20.509219 kcal Electronic energy + Delta-G solvation = -20667.792796 eV Core-core repulsion = 17383.859197 eV Total energy + Delta-G solvation = -3283.933599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54058 -39.28452 -37.23969 -36.02270 -34.18706 -31.62189 -31.26906 -30.47199 -27.98200 -27.61682 -25.86655 -24.22550 -22.72078 -22.51382 -20.65319 -20.24531 -18.60336 -16.80078 -16.63161 -16.31096 -16.19806 -16.05097 -15.37770 -15.00833 -14.70743 -14.09899 -13.75287 -13.72311 -13.70828 -13.19831 -12.84231 -12.50081 -12.33365 -12.31279 -12.05569 -11.40077 -11.22641 -11.17902 -10.87436 -10.84511 -10.58334 -10.27906 -9.98526 -9.92130 -9.69958 -9.24831 -8.64990 -8.55484 -8.49676 -6.82189 -5.73760 -3.21322 0.68263 1.17245 2.88086 2.92329 3.38632 3.44640 3.46977 3.51695 3.78861 4.47309 4.49336 4.57279 4.74268 4.79492 4.85854 4.92550 5.12083 5.18805 5.29352 5.41447 5.63636 5.69927 5.88022 5.94326 5.98793 6.09825 6.15951 6.27418 6.37406 6.67651 6.72512 6.74205 6.98205 7.08839 7.37406 7.72505 7.79123 7.80918 8.37219 8.47286 9.21519 9.83410 10.31393 11.31294 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035934 B = 0.002929 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.024999 B = 9557.920749 C = 9727.804997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.118 3.882 4 C -0.190 4.190 5 C -0.087 4.087 6 C -0.125 4.125 7 C -0.086 4.086 8 C 0.548 3.452 9 O -0.534 6.534 10 N -0.717 5.717 11 C 0.094 3.906 12 C 0.144 3.856 13 N -0.596 5.596 14 C 0.162 3.838 15 C -0.260 4.260 16 H 0.071 0.929 17 C 0.003 3.997 18 N -0.906 5.906 19 Si 0.908 3.092 20 H -0.287 1.287 21 H -0.290 1.290 22 H -0.279 1.279 23 C -0.095 4.095 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.395 0.605 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.049 0.951 34 H 0.042 0.958 35 H 0.030 0.970 36 H 0.047 0.953 37 H -0.002 1.002 38 H 0.254 0.746 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.603 -2.012 1.916 24.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.073 3.927 4 C -0.209 4.209 5 C -0.106 4.106 6 C -0.144 4.144 7 C -0.090 4.090 8 C 0.334 3.666 9 O -0.412 6.412 10 N -0.368 5.368 11 C -0.032 4.032 12 C 0.015 3.985 13 N -0.319 5.319 14 C 0.017 3.983 15 C -0.390 4.390 16 H 0.088 0.912 17 C -0.195 4.195 18 N -0.550 5.550 19 Si 0.738 3.262 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C -0.114 4.114 24 H 0.119 0.881 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.229 0.771 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.066 0.934 37 H 0.016 0.984 38 H 0.064 0.936 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.776 -2.960 1.950 24.038 hybrid contribution 0.078 0.524 -0.792 0.953 sum -23.698 -2.436 1.158 23.851 Atomic orbital electron populations 1.23070 0.78347 1.04076 1.01304 1.86109 1.21365 1.26624 1.88784 1.18871 0.92025 0.84397 0.97416 1.21396 1.00166 0.92380 1.06974 1.20872 0.94306 0.97160 0.98215 1.21265 0.93986 0.97716 1.01400 1.19881 0.93551 0.93341 1.02209 1.18213 0.86825 0.84180 0.77379 1.90798 1.65920 1.34971 1.49510 1.46117 1.09297 1.07308 1.74066 1.22592 0.75973 1.02005 1.02621 1.20999 0.86544 0.91774 0.99151 1.43932 0.99283 1.84948 1.03721 1.20857 0.93690 0.99764 0.83949 1.19232 0.93649 1.38292 0.87814 0.91171 1.25076 0.98449 0.98420 0.97598 1.70066 1.12915 1.42044 1.29999 0.86205 0.80070 0.77451 0.82502 1.21437 1.21664 1.20433 1.20509 0.91247 0.98534 1.01133 0.88143 0.92617 0.92604 0.85192 0.85105 0.85177 0.77080 0.91956 0.91089 0.93274 0.93939 0.95184 0.93399 0.98364 0.93601 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.35 10.49 -19.47 -0.20 -3.56 16 3 C 0.12 1.34 6.68 -39.28 -0.26 1.08 16 4 C -0.19 -1.70 9.03 -39.35 -0.36 -2.05 16 5 C -0.09 -0.75 10.03 -39.66 -0.40 -1.15 16 6 C -0.12 -1.28 9.54 -39.17 -0.37 -1.65 16 7 C -0.09 -1.17 5.87 -104.99 -0.62 -1.79 16 8 C 0.55 9.33 7.77 -12.33 -0.10 9.23 16 9 O -0.53 -11.41 16.35 5.31 0.09 -11.33 16 10 N -0.72 -11.20 5.51 -61.25 -0.34 -11.54 16 11 C 0.09 1.85 6.00 -4.04 -0.02 1.82 16 12 C 0.14 2.84 5.82 -4.05 -0.02 2.81 16 13 N -0.60 -14.95 2.93 -181.12 -0.53 -15.48 16 14 C 0.16 4.00 9.01 59.85 0.54 4.54 16 15 C -0.26 -7.15 9.67 -15.06 -0.15 -7.29 16 16 H 0.07 1.87 7.85 -52.48 -0.41 1.46 16 17 C 0.00 0.09 5.13 -17.43 -0.09 0.00 16 18 N -0.91 -26.67 10.59 55.49 0.59 -26.09 16 19 Si 0.91 22.02 29.57 -169.99 -5.03 17.00 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C -0.09 -1.28 9.53 -39.03 -0.37 -1.65 16 24 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.06 0.26 7.67 -51.93 -0.40 -0.13 16 26 H 0.06 0.27 7.64 -51.93 -0.40 -0.13 16 27 H 0.13 0.80 6.28 -52.49 -0.33 0.47 16 28 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.13 1.04 6.40 -52.48 -0.34 0.70 16 30 H 0.39 4.69 6.50 -40.82 -0.27 4.43 16 31 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.05 0.91 8.03 -51.92 -0.42 0.50 16 34 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 35 H 0.03 0.81 7.42 -51.93 -0.39 0.42 16 36 H 0.05 1.26 7.19 -51.93 -0.37 0.89 16 37 H 0.00 -0.05 7.84 -51.93 -0.41 -0.45 16 38 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.14 2.10 7.65 -52.48 -0.40 1.70 16 LS Contribution 329.77 15.07 4.97 4.97 Total: -1.00 -33.84 329.77 -7.04 -40.87 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -5.36 Total: 0.09 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: -1.23 Total: 5.05 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.28 Total: -53.10 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.12 Total: -14.88 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.84 -7.04 -40.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480940188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.365 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds