Wall clock time and date at job start Tue Mar 31 2020 01:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35914 * 117.00200 * 2 1 4 4 C 1.38851 * 119.97882 * 359.72635 * 3 2 1 5 5 C 1.38253 * 120.23520 * 179.72391 * 4 3 2 6 6 C 1.38007 * 120.20376 * 0.54938 * 5 4 3 7 7 C 1.39556 * 119.96784 * 359.72747 * 6 5 4 8 8 C 1.47857 * 120.11624 * 180.02562 * 7 6 5 9 9 O 1.21560 * 120.00028 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00349 * 359.97438 * 8 7 6 11 11 C 1.46504 * 120.00426 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47433 * 179.97438 * 11 10 8 13 13 N 1.46490 * 109.47295 * 179.97438 * 12 11 10 14 14 C 1.46497 * 120.00542 * 270.00054 * 13 12 11 15 15 C 1.36945 * 120.00095 * 89.99927 * 13 12 11 16 16 H 1.08007 * 119.99543 * 22.34477 * 15 13 12 17 17 C 1.38806 * 120.00028 * 202.34659 * 15 13 12 18 18 N 1.31616 * 120.00366 * 11.34812 * 17 15 13 19 19 Si 1.86806 * 119.99777 * 191.34336 * 17 15 13 20 20 H 1.48502 * 109.46953 * 90.00554 * 19 17 15 21 21 H 1.48505 * 109.47097 * 209.99965 * 19 17 15 22 22 H 1.48493 * 109.47215 * 329.99927 * 19 17 15 23 23 C 1.38448 * 119.99162 * 179.97438 * 3 2 1 24 24 H 1.09009 * 109.47068 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47289 * 299.99417 * 1 2 3 26 26 H 1.08993 * 109.47344 * 60.00172 * 1 2 3 27 27 H 1.07998 * 119.88618 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.89409 * 180.25297 * 5 4 3 29 29 H 1.08005 * 120.01364 * 179.74276 * 6 5 4 30 30 H 0.97004 * 120.00123 * 359.97438 * 10 8 7 31 31 H 1.08997 * 109.47050 * 300.00135 * 11 10 8 32 32 H 1.08998 * 109.46515 * 59.99837 * 11 10 8 33 33 H 1.09010 * 109.47025 * 300.00382 * 12 11 10 34 34 H 1.09001 * 109.46879 * 59.99847 * 12 11 10 35 35 H 1.09001 * 109.47163 * 94.20216 * 14 13 12 36 36 H 1.08999 * 109.47434 * 214.21200 * 14 13 12 37 37 H 1.09005 * 109.46479 * 334.21264 * 14 13 12 38 38 H 0.96996 * 120.00308 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.09846 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2894 2.3752 -0.0057 5 6 1.9115 3.6098 0.0000 6 6 3.2891 3.6931 0.0000 7 6 4.0579 2.5284 0.0000 8 6 5.5340 2.6138 0.0006 9 8 6.2016 1.5980 0.0011 10 7 6.1394 3.8179 0.0006 11 6 7.6020 3.9026 0.0018 12 6 8.0278 5.3721 0.0010 13 7 9.4903 5.4567 0.0027 14 6 10.2201 5.5002 1.2723 15 6 10.1754 5.4951 -1.1824 16 1 9.6776 5.8216 -2.0836 17 6 11.5096 5.1144 -1.2254 18 7 12.0550 4.5094 -0.1917 19 14 12.5309 5.4607 -2.7508 20 1 13.1729 6.7938 -2.6244 21 1 13.5788 4.4181 -2.8921 22 1 11.6529 5.4455 -3.9483 23 6 3.4286 1.2832 0.0005 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 0.2110 2.3162 -0.0098 28 1 1.3176 4.5119 -0.0004 29 1 3.7719 4.6593 0.0003 30 1 5.6067 4.6286 -0.0001 31 1 7.9936 3.4109 0.8923 32 1 7.9950 3.4102 -0.8877 33 1 7.6361 5.8634 -0.8898 34 1 7.6347 5.8648 0.8902 35 1 10.5254 4.4915 1.5506 36 1 11.1029 6.1299 1.1625 37 1 9.5746 5.9115 2.0484 38 1 12.9872 4.2430 -0.2219 39 1 4.0182 0.3783 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480940188.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:27 Heat of formation + Delta-G solvation = -44.327267 kcal Electronic energy + Delta-G solvation = -20668.825624 eV Core-core repulsion = 17383.859197 eV Total energy + Delta-G solvation = -3284.966427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.48494 -40.42747 -38.16963 -37.78738 -35.82669 -33.37168 -32.29938 -31.46944 -29.56550 -28.16110 -27.92740 -25.66095 -24.03473 -23.42756 -22.39845 -21.45195 -19.62567 -18.76984 -17.65216 -17.30141 -17.11021 -16.78171 -16.73254 -16.49188 -16.41905 -15.49676 -15.32329 -14.92954 -14.74880 -14.45758 -14.29859 -14.14476 -13.51951 -13.18137 -13.11796 -12.81169 -12.80599 -12.60240 -12.46866 -12.09781 -12.03186 -12.02288 -11.94932 -11.77095 -11.14749 -10.66861 -10.27801 -9.97910 -9.29679 -8.87409 -7.85281 -5.35181 -0.24212 0.37791 1.46670 1.47763 1.56691 1.79340 1.95810 2.42483 2.53391 2.81418 3.30142 3.58155 3.79239 3.83525 4.06309 4.13761 4.21851 4.23252 4.33040 4.42850 4.45795 4.52768 4.65704 4.75084 4.84965 4.87901 5.05318 5.10257 5.21183 5.28482 5.32440 5.34465 5.40877 5.62441 5.64494 5.72557 6.30646 6.39162 6.52521 7.12047 7.17873 7.83028 8.25215 9.18492 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.035934 B = 0.002929 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.024999 B = 9557.920749 C = 9727.804997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.341 6.341 3 C 0.111 3.889 4 C -0.175 4.175 5 C -0.076 4.076 6 C -0.118 4.118 7 C -0.107 4.107 8 C 0.546 3.454 9 O -0.592 6.592 10 N -0.699 5.699 11 C 0.114 3.886 12 C 0.147 3.853 13 N -0.615 5.615 14 C 0.174 3.826 15 C -0.265 4.265 16 H 0.078 0.922 17 C -0.057 4.057 18 N -0.940 5.940 19 Si 0.972 3.028 20 H -0.281 1.281 21 H -0.299 1.299 22 H -0.267 1.267 23 C -0.125 4.125 24 H 0.115 0.885 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.174 0.826 29 H 0.156 0.844 30 H 0.417 0.583 31 H 0.035 0.965 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.078 0.922 35 H -0.003 1.003 36 H 0.022 0.978 37 H 0.037 0.963 38 H 0.248 0.752 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.370 0.369 1.443 28.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.256 6.256 3 C 0.065 3.935 4 C -0.194 4.194 5 C -0.094 4.094 6 C -0.137 4.137 7 C -0.110 4.110 8 C 0.334 3.666 9 O -0.473 6.473 10 N -0.351 5.351 11 C -0.013 4.013 12 C 0.020 3.980 13 N -0.338 5.338 14 C 0.029 3.971 15 C -0.396 4.396 16 H 0.096 0.904 17 C -0.252 4.252 18 N -0.587 5.587 19 Si 0.800 3.200 20 H -0.208 1.208 21 H -0.226 1.226 22 H -0.192 1.192 23 C -0.145 4.145 24 H 0.133 0.867 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.183 0.817 28 H 0.192 0.808 29 H 0.174 0.826 30 H 0.256 0.744 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.016 0.984 36 H 0.041 0.959 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -27.620 -0.533 1.471 27.664 hybrid contribution 1.029 -0.247 -0.617 1.225 sum -26.591 -0.780 0.854 26.616 Atomic orbital electron populations 1.23415 0.75848 1.05737 1.02775 1.86084 1.24006 1.26735 1.88745 1.18922 0.91276 0.85757 0.97514 1.21843 1.01832 0.91416 1.04312 1.21374 0.93649 0.98552 0.95812 1.21569 0.94900 0.97214 1.00018 1.19572 0.91093 0.94849 1.05498 1.18854 0.88525 0.83422 0.75815 1.90763 1.67554 1.36897 1.52110 1.45759 1.07613 1.08198 1.73551 1.22029 0.78316 1.01530 0.99453 1.21160 0.83689 0.91438 1.01731 1.44195 1.01462 1.85021 1.03080 1.20616 0.93781 0.97611 0.85094 1.19619 0.94027 1.37041 0.88868 0.90445 1.25891 0.99853 0.98961 1.00469 1.70250 1.12730 1.43735 1.31980 0.85194 0.78291 0.76968 0.79556 1.20778 1.22574 1.19194 1.20422 0.92701 0.97724 1.03648 0.86695 0.91003 0.91037 0.81650 0.80815 0.82613 0.74391 0.94675 0.95047 0.91354 0.90373 0.98417 0.95871 0.94426 0.94291 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -6.99 10.49 -92.58 -0.97 -7.96 16 3 C 0.11 2.38 6.68 22.47 0.15 2.53 16 4 C -0.18 -2.43 9.03 22.42 0.20 -2.22 16 5 C -0.08 -0.92 10.03 22.22 0.22 -0.70 16 6 C -0.12 -2.03 9.54 22.53 0.21 -1.82 16 7 C -0.11 -2.87 5.87 -20.10 -0.12 -2.99 16 8 C 0.55 19.15 7.77 86.79 0.67 19.82 16 9 O -0.59 -27.19 16.35 -3.91 -0.06 -27.26 16 10 N -0.70 -21.43 5.51 -465.96 -2.57 -24.00 16 11 C 0.11 4.56 6.00 86.38 0.52 5.08 16 12 C 0.15 5.54 5.82 86.38 0.50 6.05 16 13 N -0.61 -30.66 2.93 -726.94 -2.13 -32.79 16 14 C 0.17 8.66 9.01 127.77 1.15 9.82 16 15 C -0.27 -14.58 9.67 84.03 0.81 -13.76 16 16 H 0.08 4.06 7.85 -2.91 -0.02 4.04 16 17 C -0.06 -3.24 5.13 84.86 0.44 -2.81 16 18 N -0.94 -57.19 10.59 21.65 0.23 -56.96 16 19 Si 0.97 45.83 29.57 68.60 2.03 47.86 16 20 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 21 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 C -0.13 -3.53 9.53 22.63 0.22 -3.31 16 24 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 26 H 0.07 0.43 7.64 -2.39 -0.02 0.42 16 27 H 0.17 1.10 6.28 -2.91 -0.02 1.08 16 28 H 0.17 0.72 8.06 -2.91 -0.02 0.69 16 29 H 0.16 1.77 6.40 -2.91 -0.02 1.75 16 30 H 0.42 8.79 6.50 -92.71 -0.60 8.19 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 2.35 8.03 -2.38 -0.02 2.33 16 34 H 0.08 2.43 7.86 -2.39 -0.02 2.41 16 35 H 0.00 -0.14 7.42 -2.39 -0.02 -0.16 16 36 H 0.02 1.23 7.19 -2.39 -0.02 1.21 16 37 H 0.04 1.54 7.84 -2.38 -0.02 1.52 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.11 3.75 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -79.07 329.77 3.08 -75.99 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.46 Total: 8.17 kcal Atomic # 6 Polarization: 10.85 SS G_CDS: 6.09 Total: 16.94 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -4.46 Total: -113.75 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.04 Total: -35.21 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -79.07 3.08 -75.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480940188.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.664 kcal (2) G-P(sol) polarization free energy of solvation -79.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds