Wall clock time and date at job start Tue Mar 31 2020 01:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40086 * 126.03495 * 2 1 4 4 C 1.30839 * 108.20215 * 179.73941 * 3 2 1 5 5 C 1.39866 * 108.20353 * 0.43735 * 4 3 2 6 6 C 1.34943 * 126.04033 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.12544 * 359.97438 * 6 2 1 8 8 C 1.52994 * 109.47428 * 265.00234 * 7 6 2 9 9 C 1.50703 * 109.47061 * 180.02562 * 8 7 6 10 10 O 1.20824 * 119.99982 * 0.02562 * 9 8 7 11 11 O 1.34232 * 119.99647 * 179.97438 * 9 8 7 12 12 C 1.45197 * 116.99547 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47359 * 30.00194 * 12 11 9 14 14 C 1.50705 * 109.47069 * 150.00359 * 12 11 9 15 15 H 1.07990 * 120.00331 * 114.73209 * 14 12 11 16 16 C 1.37882 * 119.99663 * 294.73028 * 14 12 11 17 17 N 1.31506 * 119.99951 * 184.83743 * 16 14 12 18 18 Si 1.86800 * 120.00042 * 4.84109 * 16 14 12 19 19 H 1.48492 * 109.47371 * 84.85264 * 18 16 14 20 20 H 1.48504 * 109.46999 * 204.85737 * 18 16 14 21 21 H 1.48507 * 109.46871 * 324.85273 * 18 16 14 22 22 C 1.52996 * 109.47189 * 269.99994 * 12 11 9 23 23 C 1.53006 * 117.50183 * 134.05192 * 22 12 11 24 24 C 1.52998 * 117.50187 * 65.39053 * 22 12 11 25 25 H 1.09003 * 109.46884 * 269.97730 * 1 2 3 26 26 H 1.08995 * 109.47196 * 29.97226 * 1 2 3 27 27 H 1.08999 * 109.46966 * 149.97945 * 1 2 3 28 28 H 1.08009 * 125.89471 * 180.25637 * 4 3 2 29 29 H 1.08002 * 126.03822 * 179.81384 * 5 4 3 30 30 H 1.09003 * 109.46637 * 25.00404 * 7 6 2 31 31 H 1.09004 * 109.47077 * 144.99709 * 7 6 2 32 32 H 1.09003 * 109.47350 * 299.99733 * 8 7 6 33 33 H 1.08997 * 109.47029 * 59.99757 * 8 7 6 34 34 H 0.96998 * 120.00285 * 180.02562 * 17 16 14 35 35 H 1.09010 * 115.55010 * 279.72322 * 22 12 11 36 36 H 1.09003 * 117.49391 * 0.02562 * 23 22 12 37 37 H 1.09003 * 117.49898 * 145.02197 * 23 22 12 38 38 H 1.08997 * 117.50273 * 214.98312 * 24 22 12 39 39 H 1.09003 * 117.49339 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0057 5 6 3.5437 -0.6665 -0.0007 6 6 2.2590 -1.0912 -0.0005 7 6 1.7974 -2.5258 -0.0006 8 6 1.7613 -3.0501 1.4363 9 6 1.3004 -4.4849 1.4360 10 8 1.0291 -5.0320 0.3935 11 8 1.1923 -5.1552 2.5939 12 6 0.7418 -6.5335 2.5180 13 1 1.0562 -6.9667 1.5686 14 6 1.3428 -7.3216 3.6533 15 1 0.7054 -7.7338 4.4214 16 6 2.7066 -7.5163 3.7113 17 7 3.2222 -8.2827 4.6473 18 14 3.8219 -6.6915 2.4602 19 1 4.1397 -5.3134 2.9129 20 1 5.0787 -7.4712 2.3274 21 1 3.1337 -6.6343 1.1454 22 6 -0.7842 -6.5776 2.6184 23 6 -1.5326 -7.4634 1.6202 24 6 -1.5857 -5.9398 1.4818 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4054 1.3712 0.0111 29 1 4.4212 -1.2962 -0.0012 30 1 0.7994 -2.5862 -0.4346 31 1 2.4873 -3.1294 -0.5905 32 1 2.7594 -2.9896 1.8703 33 1 1.0715 -2.4465 2.0260 34 1 4.1816 -8.4194 4.6884 35 1 -1.1915 -6.5001 3.6265 36 1 -0.9376 -8.0151 0.8923 37 1 -2.4324 -7.9684 1.9715 38 1 -2.5204 -5.4432 1.7420 39 1 -1.0257 -5.4885 0.6627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518000422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:08 Heat of formation + Delta-G solvation = 11.475092 kcal Electronic energy + Delta-G solvation = -21736.049418 eV Core-core repulsion = 18453.502762 eV Total energy + Delta-G solvation = -3282.546655 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.33858 -39.80505 -36.87943 -35.20056 -34.11975 -33.06384 -32.76328 -29.65405 -28.47601 -26.85247 -24.97128 -23.14031 -21.80680 -21.24055 -20.54353 -19.66619 -19.36985 -17.40370 -17.13900 -16.49316 -16.06506 -15.75065 -15.22398 -14.90405 -14.48926 -14.12251 -13.88841 -13.67231 -13.15291 -12.97275 -12.65767 -12.57844 -12.43148 -12.32922 -11.81092 -11.58848 -11.29485 -11.17784 -10.95701 -10.83615 -10.69746 -10.28359 -9.89583 -9.78116 -9.52316 -9.45288 -9.35030 -9.04852 -8.84472 -8.59784 -6.36668 -4.44101 1.73866 2.40443 2.74166 2.86317 3.20176 3.26234 3.31277 3.52551 4.24655 4.41598 4.43741 4.61804 4.85794 4.90560 5.00434 5.05107 5.07434 5.23953 5.37558 5.41127 5.53499 5.60495 5.60940 5.66824 5.74728 5.91322 5.96895 6.12255 6.14033 6.21009 6.44395 6.56623 6.57303 6.69093 6.88855 6.93294 7.34537 7.60263 7.60978 8.21398 8.60722 8.70442 9.23632 10.72563 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.005236 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.939179 B = 5346.418194 C = 6450.424881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.372 5.372 3 N -0.303 5.303 4 C 0.046 3.954 5 C -0.272 4.272 6 C 0.091 3.909 7 C -0.046 4.046 8 C -0.118 4.118 9 C 0.447 3.553 10 O -0.525 6.525 11 O -0.352 6.352 12 C 0.206 3.794 13 H 0.052 0.948 14 C -0.508 4.508 15 H 0.089 0.911 16 C 0.088 3.912 17 N -0.873 5.873 18 Si 0.874 3.126 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.259 1.259 22 C -0.139 4.139 23 C -0.169 4.169 24 C -0.201 4.201 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.183 0.817 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.271 0.729 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 13.591 -8.803 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.155 5.155 3 N -0.124 5.124 4 C -0.139 4.139 5 C -0.301 4.301 6 C -0.036 4.036 7 C -0.085 4.085 8 C -0.157 4.157 9 C 0.291 3.709 10 O -0.417 6.417 11 O -0.269 6.269 12 C 0.155 3.845 13 H 0.070 0.930 14 C -0.544 4.544 15 H 0.107 0.893 16 C -0.120 4.120 17 N -0.509 5.509 18 Si 0.701 3.299 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.183 1.183 22 C -0.158 4.158 23 C -0.207 4.207 24 C -0.238 4.238 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.200 0.800 29 H 0.166 0.834 30 H 0.103 0.897 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.526 14.313 -8.993 17.499 hybrid contribution 1.175 -0.342 -0.447 1.303 sum -3.351 13.971 -9.440 17.191 Atomic orbital electron populations 1.21888 0.74463 1.04478 1.03638 1.48503 1.06523 1.03396 1.57034 1.77335 1.01901 1.07959 1.25230 1.23813 0.95187 0.95068 0.99826 1.21305 0.96413 0.95082 1.17349 1.21068 0.91378 0.90236 1.00929 1.20051 1.03683 0.87955 0.96804 1.21386 1.04788 0.91811 0.97720 1.23384 0.74500 0.89184 0.83813 1.90532 1.47514 1.69974 1.33685 1.86998 1.75818 1.31230 1.32859 1.20808 0.88734 0.75438 0.99558 0.93004 1.21004 0.93206 1.29240 1.10962 0.89314 1.25082 0.98303 0.93295 0.95277 1.69884 1.13144 1.35191 1.32656 0.86887 0.80018 0.80332 0.82635 1.19319 1.21476 1.18317 1.22625 0.95005 1.03541 0.94590 1.22799 1.01996 0.92845 1.03010 1.23168 1.01936 0.95938 1.02781 0.90524 0.89324 0.89298 0.80049 0.83429 0.89733 0.88213 0.87767 0.88272 0.91888 0.88051 0.89022 0.89461 0.90084 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.83 11.27 59.85 0.67 1.50 16 2 N -0.37 -4.58 4.01 -63.88 -0.26 -4.83 16 3 N -0.30 -4.07 12.58 30.63 0.39 -3.69 16 4 C 0.05 0.55 12.03 -17.37 -0.21 0.34 16 5 C -0.27 -3.33 10.72 -40.02 -0.43 -3.75 16 6 C 0.09 1.15 6.18 -82.27 -0.51 0.64 16 7 C -0.05 -0.58 4.79 -27.88 -0.13 -0.71 16 8 C -0.12 -1.74 5.79 -27.88 -0.16 -1.90 16 9 C 0.45 8.71 6.32 36.01 0.23 8.94 16 10 O -0.53 -10.93 12.93 -18.75 -0.24 -11.17 16 11 O -0.35 -7.99 8.18 -39.26 -0.32 -8.31 16 12 C 0.21 4.93 1.53 -27.88 -0.04 4.88 16 13 H 0.05 1.32 5.90 -51.93 -0.31 1.02 16 14 C -0.51 -13.98 9.35 -34.44 -0.32 -14.30 16 15 H 0.09 2.58 7.99 -52.49 -0.42 2.16 16 16 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 17 N -0.87 -25.52 13.96 55.43 0.77 -24.74 16 18 Si 0.87 21.48 25.56 -169.99 -4.34 17.13 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.26 -6.38 6.42 56.52 0.36 -6.02 16 22 C -0.14 -2.86 5.29 -90.62 -0.48 -3.34 16 23 C -0.17 -3.03 10.18 -26.69 -0.27 -3.30 16 24 C -0.20 -3.54 9.82 -26.69 -0.26 -3.80 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.09 0.64 6.97 -51.93 -0.36 0.28 16 28 H 0.18 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.08 0.99 6.91 -51.93 -0.36 0.63 16 31 H 0.10 1.30 8.10 -51.93 -0.42 0.88 16 32 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 2.06 8.14 -51.92 -0.42 1.64 16 36 H 0.09 1.68 8.08 -51.93 -0.42 1.26 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.10 1.92 5.59 -51.93 -0.29 1.63 16 LS Contribution 327.57 15.07 4.94 4.94 Total: -1.00 -32.13 327.57 -6.64 -38.77 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -5.56 Total: 4.35 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -2.02 Total: -12.44 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.90 Total: -33.26 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.56 Total: -19.48 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.34 Total: 17.13 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.13 -6.64 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.241 kcal (2) G-P(sol) polarization free energy of solvation -32.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds