Wall clock time and date at job start Tue Mar 31 2020 01:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40086 * 126.03495 * 2 1 4 4 C 1.30839 * 108.20215 * 179.73941 * 3 2 1 5 5 C 1.39866 * 108.20353 * 0.43735 * 4 3 2 6 6 C 1.34943 * 126.04033 * 180.02562 * 2 1 3 7 7 C 1.50703 * 126.12544 * 359.97438 * 6 2 1 8 8 C 1.52994 * 109.47428 * 265.00234 * 7 6 2 9 9 C 1.50703 * 109.47061 * 180.02562 * 8 7 6 10 10 O 1.20824 * 119.99982 * 0.02562 * 9 8 7 11 11 O 1.34232 * 119.99647 * 179.97438 * 9 8 7 12 12 C 1.45197 * 116.99547 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.47359 * 30.00194 * 12 11 9 14 14 C 1.50705 * 109.47069 * 150.00359 * 12 11 9 15 15 H 1.07990 * 120.00331 * 114.73209 * 14 12 11 16 16 C 1.37882 * 119.99663 * 294.73028 * 14 12 11 17 17 N 1.31506 * 119.99951 * 184.83743 * 16 14 12 18 18 Si 1.86800 * 120.00042 * 4.84109 * 16 14 12 19 19 H 1.48492 * 109.47371 * 84.85264 * 18 16 14 20 20 H 1.48504 * 109.46999 * 204.85737 * 18 16 14 21 21 H 1.48507 * 109.46871 * 324.85273 * 18 16 14 22 22 C 1.52996 * 109.47189 * 269.99994 * 12 11 9 23 23 C 1.53006 * 117.50183 * 134.05192 * 22 12 11 24 24 C 1.52998 * 117.50187 * 65.39053 * 22 12 11 25 25 H 1.09003 * 109.46884 * 269.97730 * 1 2 3 26 26 H 1.08995 * 109.47196 * 29.97226 * 1 2 3 27 27 H 1.08999 * 109.46966 * 149.97945 * 1 2 3 28 28 H 1.08009 * 125.89471 * 180.25637 * 4 3 2 29 29 H 1.08002 * 126.03822 * 179.81384 * 5 4 3 30 30 H 1.09003 * 109.46637 * 25.00404 * 7 6 2 31 31 H 1.09004 * 109.47077 * 144.99709 * 7 6 2 32 32 H 1.09003 * 109.47350 * 299.99733 * 8 7 6 33 33 H 1.08997 * 109.47029 * 59.99757 * 8 7 6 34 34 H 0.96998 * 120.00285 * 180.02562 * 17 16 14 35 35 H 1.09010 * 115.55010 * 279.72322 * 22 12 11 36 36 H 1.09003 * 117.49391 * 0.02562 * 23 22 12 37 37 H 1.09003 * 117.49898 * 145.02197 * 23 22 12 38 38 H 1.08997 * 117.50273 * 214.98312 * 24 22 12 39 39 H 1.09003 * 117.49339 * 359.97438 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 0.0057 5 6 3.5437 -0.6665 -0.0007 6 6 2.2590 -1.0912 -0.0005 7 6 1.7974 -2.5258 -0.0006 8 6 1.7613 -3.0501 1.4363 9 6 1.3004 -4.4849 1.4360 10 8 1.0291 -5.0320 0.3935 11 8 1.1923 -5.1552 2.5939 12 6 0.7418 -6.5335 2.5180 13 1 1.0562 -6.9667 1.5686 14 6 1.3428 -7.3216 3.6533 15 1 0.7054 -7.7338 4.4214 16 6 2.7066 -7.5163 3.7113 17 7 3.2222 -8.2827 4.6473 18 14 3.8219 -6.6915 2.4602 19 1 4.1397 -5.3134 2.9129 20 1 5.0787 -7.4712 2.3274 21 1 3.1337 -6.6343 1.1454 22 6 -0.7842 -6.5776 2.6184 23 6 -1.5326 -7.4634 1.6202 24 6 -1.5857 -5.9398 1.4818 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5134 27 1 -0.3633 -0.8898 -0.5142 28 1 4.4054 1.3712 0.0111 29 1 4.4212 -1.2962 -0.0012 30 1 0.7994 -2.5862 -0.4346 31 1 2.4873 -3.1294 -0.5905 32 1 2.7594 -2.9896 1.8703 33 1 1.0715 -2.4465 2.0260 34 1 4.1816 -8.4194 4.6884 35 1 -1.1915 -6.5001 3.6265 36 1 -0.9376 -8.0151 0.8923 37 1 -2.4324 -7.9684 1.9715 38 1 -2.5204 -5.4432 1.7420 39 1 -1.0257 -5.4885 0.6627 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518000422.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:21:07 Heat of formation + Delta-G solvation = -7.463275 kcal Electronic energy + Delta-G solvation = -21736.870647 eV Core-core repulsion = 18453.502762 eV Total energy + Delta-G solvation = -3283.367884 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.24003 -41.42246 -38.44621 -36.81858 -35.20428 -34.86116 -33.90716 -30.97693 -30.10693 -27.59763 -26.22474 -24.96317 -23.22134 -22.14107 -21.96398 -21.08041 -20.57944 -19.25270 -18.73671 -17.78969 -17.53034 -16.99070 -16.52739 -16.27472 -15.64569 -15.58327 -15.16902 -14.91088 -14.49856 -14.36591 -13.93118 -13.70539 -13.52012 -13.30172 -13.21319 -13.19044 -12.99797 -12.75589 -12.37276 -12.21888 -12.04555 -11.83182 -11.61831 -11.40963 -11.27522 -11.04142 -10.92803 -10.75590 -10.25628 -9.49782 -8.50431 -6.62233 0.81999 1.22293 1.25377 1.30444 1.39876 1.60832 1.82396 2.01225 2.20862 2.97490 3.01677 3.57750 3.71042 3.80163 3.85292 3.90113 4.07185 4.10250 4.25969 4.33122 4.35462 4.43682 4.52702 4.59488 4.64616 4.76100 4.80327 4.84155 4.85760 4.95321 4.99681 5.23727 5.27658 5.32762 5.35596 5.73406 5.89152 6.05858 6.13666 6.48687 6.72970 6.98390 7.09925 8.62969 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.005236 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.939179 B = 5346.418194 C = 6450.424881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.376 5.376 3 N -0.331 5.331 4 C 0.044 3.956 5 C -0.284 4.284 6 C 0.083 3.917 7 C -0.035 4.035 8 C -0.109 4.109 9 C 0.443 3.557 10 O -0.538 6.538 11 O -0.367 6.367 12 C 0.216 3.784 13 H 0.034 0.966 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.040 3.960 17 N -0.917 5.917 18 Si 0.927 3.073 19 H -0.251 1.251 20 H -0.281 1.281 21 H -0.262 1.262 22 C -0.171 4.171 23 C -0.162 4.162 24 C -0.175 4.175 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.210 0.790 29 H 0.159 0.841 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.121 0.879 34 H 0.275 0.725 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.191 15.484 -10.244 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.159 5.159 3 N -0.153 5.153 4 C -0.141 4.141 5 C -0.313 4.313 6 C -0.045 4.045 7 C -0.074 4.074 8 C -0.147 4.147 9 C 0.288 3.712 10 O -0.430 6.430 11 O -0.284 6.284 12 C 0.164 3.836 13 H 0.052 0.948 14 C -0.559 4.559 15 H 0.075 0.925 16 C -0.163 4.163 17 N -0.554 5.554 18 Si 0.751 3.249 19 H -0.175 1.175 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.189 4.189 23 C -0.199 4.199 24 C -0.212 4.212 25 H 0.104 0.896 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.226 0.774 29 H 0.177 0.823 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.101 0.899 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.092 16.226 -10.441 19.956 hybrid contribution 1.267 -0.904 -0.028 1.557 sum -3.825 15.323 -10.469 18.948 Atomic orbital electron populations 1.22182 0.72787 1.05733 1.04678 1.48794 1.07623 1.02942 1.56572 1.77299 1.02794 1.08935 1.26273 1.24314 0.95606 0.95396 0.98774 1.21607 0.96849 0.95613 1.17227 1.21046 0.91759 0.90117 1.01552 1.19927 1.04273 0.87935 0.95282 1.21439 1.05280 0.88333 0.99643 1.24197 0.73903 0.90652 0.82476 1.90528 1.47970 1.70675 1.33816 1.86868 1.76540 1.30355 1.34649 1.20361 0.90804 0.75668 0.96781 0.94805 1.21170 0.93150 1.30495 1.11069 0.92476 1.25802 0.99685 0.93825 0.96958 1.69984 1.13684 1.37085 1.34695 0.86065 0.78388 0.80307 0.80143 1.17511 1.20740 1.18694 1.22487 0.93199 1.07532 0.95710 1.22931 1.02174 0.93453 1.01320 1.23187 1.02030 0.95769 1.00207 0.89556 0.88367 0.87861 0.77362 0.82349 0.88709 0.88644 0.87260 0.86084 0.91567 0.88389 0.89873 0.86716 0.86928 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 11.27 127.77 1.44 2.70 16 2 N -0.38 -8.37 4.01 -356.03 -1.43 -9.80 16 3 N -0.33 -8.24 12.58 -57.02 -0.72 -8.96 16 4 C 0.04 0.93 12.03 85.23 1.02 1.95 16 5 C -0.28 -6.26 10.72 21.99 0.24 -6.02 16 6 C 0.08 1.89 6.18 41.41 0.26 2.14 16 7 C -0.04 -0.79 4.79 29.85 0.14 -0.65 16 8 C -0.11 -2.89 5.79 29.85 0.17 -2.71 16 9 C 0.44 16.39 6.32 71.24 0.45 16.84 16 10 O -0.54 -21.43 12.93 21.97 0.28 -21.14 16 11 O -0.37 -16.30 8.18 -51.44 -0.42 -16.72 16 12 C 0.22 10.37 1.53 29.85 0.05 10.41 16 13 H 0.03 1.74 5.90 -2.39 -0.01 1.73 16 14 C -0.52 -29.61 9.35 25.60 0.24 -29.37 16 15 H 0.06 3.50 7.99 -2.92 -0.02 3.47 16 16 C 0.04 2.30 5.47 84.66 0.46 2.76 16 17 N -0.92 -55.09 13.96 21.45 0.30 -54.79 16 18 Si 0.93 44.37 25.56 68.60 1.75 46.13 16 19 H -0.25 -11.21 7.11 99.48 0.71 -10.51 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.26 -12.58 6.42 99.48 0.64 -11.94 16 22 C -0.17 -6.90 5.29 -10.79 -0.06 -6.96 16 23 C -0.16 -5.50 10.18 30.62 0.31 -5.19 16 24 C -0.18 -5.71 9.82 30.62 0.30 -5.41 16 25 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.17 6.97 -2.39 -0.02 1.16 16 28 H 0.21 2.92 8.06 -2.91 -0.02 2.89 16 29 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 30 H 0.09 1.94 6.91 -2.39 -0.02 1.92 16 31 H 0.10 2.26 8.10 -2.39 -0.02 2.24 16 32 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 33 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 35 H 0.10 3.98 8.14 -2.38 -0.02 3.96 16 36 H 0.08 2.96 8.08 -2.39 -0.02 2.94 16 37 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 38 H 0.11 2.97 8.14 -2.39 -0.02 2.95 16 39 H 0.09 3.28 5.59 -2.39 -0.01 3.26 16 Total: -1.00 -70.22 327.57 5.77 -64.45 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.98 Total: 20.34 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 5.03 Total: -19.50 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.85 Total: -73.54 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.14 Total: -37.86 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.75 Total: 46.13 kcal Total: -70.22 5.77 -64.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518000422.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.984 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds