Wall clock time and date at job start Mon Mar 30 2020 23:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34220 * 125.74219 * 125.00143 * 3 2 1 5 5 C 1.38126 * 107.40991 * 179.97438 * 4 3 2 6 6 C 1.47286 * 126.42727 * 179.97438 * 5 4 3 7 7 O 1.21528 * 119.99962 * 180.02562 * 6 5 4 8 8 O 1.34754 * 119.99872 * 0.02562 * 6 5 4 9 9 C 1.45203 * 116.99724 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47395 * 330.00659 * 9 8 6 11 11 C 1.50700 * 109.47216 * 209.99762 * 9 8 6 12 12 H 1.07995 * 119.99664 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00220 * 179.97438 * 11 9 8 14 14 N 1.31519 * 119.99550 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00341 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46816 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46966 * 120.00127 * 15 13 11 18 18 H 1.48496 * 109.47184 * 240.00351 * 15 13 11 19 19 C 1.53000 * 109.46842 * 90.00060 * 9 8 6 20 20 C 1.53004 * 117.50217 * 8.74631 * 19 9 8 21 21 C 1.52999 * 117.50273 * 300.08685 * 19 9 8 22 22 C 1.41339 * 107.14293 * 0.02562 * 5 4 3 23 23 C 1.50696 * 125.99166 * 180.02562 * 22 5 4 24 24 N 1.30427 * 108.01619 * 359.74015 * 22 5 4 25 25 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 26 26 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 28 28 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 29 29 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 30 30 H 1.08004 * 126.29742 * 359.95471 * 4 3 2 31 31 H 0.97008 * 119.99592 * 179.97438 * 14 13 11 32 32 H 1.09000 * 115.55255 * 154.41670 * 19 9 8 33 33 H 1.08998 * 117.49154 * 0.02562 * 20 19 9 34 34 H 1.09001 * 117.49953 * 145.01848 * 20 19 9 35 35 H 1.08997 * 117.50028 * 214.98215 * 21 19 9 36 36 H 1.09003 * 117.49549 * 359.97438 * 21 19 9 37 37 H 1.09005 * 109.47577 * 89.99991 * 23 22 5 38 38 H 1.09001 * 109.47601 * 210.00081 * 23 22 5 39 39 H 1.09005 * 109.47607 * 329.99702 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8687 1.9123 0.8924 5 6 3.0712 3.2314 0.5362 6 6 3.9314 4.2032 1.2325 7 8 4.0240 5.3409 0.8155 8 8 4.6158 3.8307 2.3319 9 6 5.4442 4.8405 2.9663 10 1 5.7997 5.5442 2.2136 11 6 6.6231 4.1780 3.6313 12 1 6.7384 3.1053 3.5818 13 6 7.5550 4.9413 4.3020 14 7 7.4148 6.2476 4.3619 15 14 9.0167 4.1201 5.1258 16 1 8.9442 2.6521 4.9135 17 1 10.2753 4.6435 4.5365 18 1 8.9928 4.4120 6.5816 19 6 4.6210 5.5896 4.0161 20 6 3.2317 5.0411 4.3479 21 6 3.3719 6.3317 3.5369 22 6 2.2970 3.4739 -0.6212 23 6 2.2054 4.7797 -1.3678 24 7 1.6806 2.3677 -0.9333 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3128 1.4021 1.7344 31 1 8.0702 6.7846 4.8341 32 1 5.1921 6.0383 4.8289 33 1 2.9045 4.1463 3.8184 34 1 2.8888 5.1292 5.3787 35 1 3.1210 7.2684 4.0345 36 1 3.1367 6.2866 2.4735 37 1 2.9766 4.8132 -2.1374 38 1 1.2235 4.8640 -1.8335 39 1 2.3498 5.6068 -0.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:08 Heat of formation + Delta-G solvation = 8.460706 kcal Electronic energy + Delta-G solvation = -21906.596473 eV Core-core repulsion = 18623.919104 eV Total energy + Delta-G solvation = -3282.677369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.29770 -39.26103 -36.34077 -34.87700 -34.50353 -32.77566 -31.46709 -30.11761 -27.97413 -27.49920 -24.08963 -23.22124 -22.21932 -21.39226 -20.62518 -19.32253 -18.85402 -17.32883 -16.59923 -16.24496 -15.81462 -15.35956 -15.15727 -14.59207 -14.14883 -14.06917 -13.69665 -13.26949 -12.84865 -12.74672 -12.42977 -12.37817 -12.15126 -11.91315 -11.61999 -11.46208 -11.28625 -11.08472 -10.96780 -10.69342 -10.51408 -10.26840 -10.00920 -9.54579 -9.41738 -9.26704 -9.05307 -8.54119 -8.46327 -8.40023 -6.16293 -4.22917 1.64380 2.29746 2.32335 3.24609 3.31708 3.35865 3.81648 3.83569 4.25317 4.38474 4.66863 4.78108 4.84590 4.93787 5.00182 5.16782 5.19895 5.35897 5.50042 5.67256 5.79908 5.85241 5.91293 5.92039 6.07979 6.15530 6.17650 6.23705 6.51223 6.62679 6.77693 6.86950 7.01043 7.08673 7.26301 7.62401 7.64931 7.67942 7.90845 8.16912 8.71724 8.96375 9.41538 10.90981 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004793 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.589898 B = 5840.898761 C = 6337.438970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.127 3.873 3 N -0.365 5.365 4 C 0.123 3.877 5 C -0.269 4.269 6 C 0.531 3.469 7 O -0.519 6.519 8 O -0.353 6.353 9 C 0.250 3.750 10 H 0.053 0.947 11 C -0.516 4.516 12 H 0.069 0.931 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.908 3.092 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.115 4.115 20 C -0.195 4.195 21 C -0.209 4.209 22 C 0.133 3.867 23 C -0.077 4.077 24 N -0.306 5.306 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.191 0.809 31 H 0.265 0.735 32 H 0.128 0.872 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.516 -10.218 -6.479 16.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.007 3.993 3 N -0.143 5.143 4 C -0.028 4.028 5 C -0.282 4.282 6 C 0.376 3.624 7 O -0.410 6.410 8 O -0.269 6.269 9 C 0.197 3.803 10 H 0.071 0.929 11 C -0.554 4.554 12 H 0.088 0.912 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.134 4.134 20 C -0.232 4.232 21 C -0.246 4.246 22 C -0.035 4.035 23 C -0.136 4.136 24 N -0.128 5.128 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.208 0.792 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.221 -10.443 -7.300 17.655 hybrid contribution 1.342 0.059 1.235 1.825 sum -10.879 -10.384 -6.064 16.216 Atomic orbital electron populations 1.22054 0.93608 1.02860 1.03780 1.21788 0.96270 0.77099 1.04166 1.48472 1.34794 1.10456 1.20610 1.23325 0.91281 0.93833 0.94367 1.19649 1.11125 0.94255 1.03159 1.19894 0.77654 0.85637 0.79236 1.90714 1.63176 1.20745 1.66381 1.86528 1.55912 1.46330 1.38109 1.20108 0.85573 0.85051 0.89579 0.92926 1.20983 1.05360 0.94631 1.34425 0.91233 1.24894 0.98126 0.94873 0.95976 1.69998 1.35885 1.04260 1.42056 0.86278 0.81664 0.79590 0.78951 1.19527 1.20792 1.20776 1.23015 0.87809 0.99837 1.02752 1.22781 1.03895 0.97200 0.99294 1.23153 1.06515 0.94691 1.00279 1.22459 0.92677 0.95042 0.93280 1.20354 1.02283 0.90979 0.99989 1.77068 1.25333 0.96686 1.13750 0.91018 0.90643 0.91916 0.89488 0.88208 0.79226 0.92506 0.85391 0.89849 0.90622 0.90657 0.88630 0.90224 0.91237 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 10.09 37.16 0.37 -0.84 16 2 C 0.13 1.03 7.21 -4.04 -0.03 1.00 16 3 N -0.36 -4.69 3.65 -60.79 -0.22 -4.91 16 4 C 0.12 1.76 11.28 -16.55 -0.19 1.57 16 5 C -0.27 -4.78 6.13 -105.08 -0.64 -5.42 16 6 C 0.53 11.42 6.90 34.41 0.24 11.66 16 7 O -0.52 -12.09 12.01 -19.29 -0.23 -12.33 16 8 O -0.35 -8.23 8.21 -40.64 -0.33 -8.57 16 9 C 0.25 6.57 2.41 -27.88 -0.07 6.50 16 10 H 0.05 1.55 7.16 -51.93 -0.37 1.18 16 11 C -0.52 -14.19 8.90 -34.44 -0.31 -14.50 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.06 1.73 5.20 -17.82 -0.09 1.64 16 14 N -0.88 -24.82 11.59 55.43 0.64 -24.18 16 15 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 16 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.12 -2.86 5.27 -90.62 -0.48 -3.34 16 20 C -0.19 -4.14 9.80 -26.69 -0.26 -4.41 16 21 C -0.21 -4.64 9.85 -26.70 -0.26 -4.91 16 22 C 0.13 2.17 7.27 -82.01 -0.60 1.57 16 23 C -0.08 -1.10 9.92 36.00 0.36 -0.75 16 24 N -0.31 -4.65 12.33 33.90 0.42 -4.23 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.56 8.06 -51.93 -0.42 0.14 16 30 H 0.19 2.24 8.06 -52.48 -0.42 1.82 16 31 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.13 3.45 6.46 -51.93 -0.34 3.12 16 33 H 0.08 1.74 6.91 -51.93 -0.36 1.38 16 34 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 35 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.10 2.19 5.36 -51.93 -0.28 1.91 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.53 6.55 -51.93 -0.34 1.19 16 LS Contribution 328.70 15.07 4.95 4.95 Total: -1.00 -31.65 328.70 -7.20 -38.85 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.45 Total: 4.86 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: -1.95 Total: -10.21 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.84 Total: -33.32 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.57 Total: -20.89 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.65 -7.20 -38.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.315 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds