Wall clock time and date at job start Mon Mar 30 2020 23:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.46688 * 2 1 4 4 C 1.34220 * 125.74219 * 125.00143 * 3 2 1 5 5 C 1.38126 * 107.40991 * 179.97438 * 4 3 2 6 6 C 1.47286 * 126.42727 * 179.97438 * 5 4 3 7 7 O 1.21528 * 119.99962 * 180.02562 * 6 5 4 8 8 O 1.34754 * 119.99872 * 0.02562 * 6 5 4 9 9 C 1.45203 * 116.99724 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.47395 * 330.00659 * 9 8 6 11 11 C 1.50700 * 109.47216 * 209.99762 * 9 8 6 12 12 H 1.07995 * 119.99664 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00220 * 179.97438 * 11 9 8 14 14 N 1.31519 * 119.99550 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00341 * 180.02562 * 13 11 9 16 16 H 1.48506 * 109.46816 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46966 * 120.00127 * 15 13 11 18 18 H 1.48496 * 109.47184 * 240.00351 * 15 13 11 19 19 C 1.53000 * 109.46842 * 90.00060 * 9 8 6 20 20 C 1.53004 * 117.50217 * 8.74631 * 19 9 8 21 21 C 1.52999 * 117.50273 * 300.08685 * 19 9 8 22 22 C 1.41339 * 107.14293 * 0.02562 * 5 4 3 23 23 C 1.50696 * 125.99166 * 180.02562 * 22 5 4 24 24 N 1.30427 * 108.01619 * 359.74015 * 22 5 4 25 25 H 1.09000 * 109.47236 * 60.00319 * 1 2 3 26 26 H 1.09002 * 109.46820 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47230 * 299.99915 * 1 2 3 28 28 H 1.08999 * 109.47230 * 240.00085 * 2 1 3 29 29 H 1.09000 * 109.47236 * 119.99680 * 2 1 3 30 30 H 1.08004 * 126.29742 * 359.95471 * 4 3 2 31 31 H 0.97008 * 119.99592 * 179.97438 * 14 13 11 32 32 H 1.09000 * 115.55255 * 154.41670 * 19 9 8 33 33 H 1.08998 * 117.49154 * 0.02562 * 20 19 9 34 34 H 1.09001 * 117.49953 * 145.01848 * 20 19 9 35 35 H 1.08997 * 117.50028 * 214.98215 * 21 19 9 36 36 H 1.09003 * 117.49549 * 359.97438 * 21 19 9 37 37 H 1.09005 * 109.47577 * 89.99991 * 23 22 5 38 38 H 1.09001 * 109.47601 * 210.00081 * 23 22 5 39 39 H 1.09005 * 109.47607 * 329.99702 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8687 1.9123 0.8924 5 6 3.0712 3.2314 0.5362 6 6 3.9314 4.2032 1.2325 7 8 4.0240 5.3409 0.8155 8 8 4.6158 3.8307 2.3319 9 6 5.4442 4.8405 2.9663 10 1 5.7997 5.5442 2.2136 11 6 6.6231 4.1780 3.6313 12 1 6.7384 3.1053 3.5818 13 6 7.5550 4.9413 4.3020 14 7 7.4148 6.2476 4.3619 15 14 9.0167 4.1201 5.1258 16 1 8.9442 2.6521 4.9135 17 1 10.2753 4.6435 4.5365 18 1 8.9928 4.4120 6.5816 19 6 4.6210 5.5896 4.0161 20 6 3.2317 5.0411 4.3479 21 6 3.3719 6.3317 3.5369 22 6 2.2970 3.4739 -0.6212 23 6 2.2054 4.7797 -1.3678 24 7 1.6806 2.3677 -0.9333 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3128 1.4021 1.7344 31 1 8.0702 6.7846 4.8341 32 1 5.1921 6.0383 4.8289 33 1 2.9045 4.1463 3.8184 34 1 2.8888 5.1292 5.3787 35 1 3.1210 7.2684 4.0345 36 1 3.1367 6.2866 2.4735 37 1 2.9766 4.8132 -2.1374 38 1 1.2235 4.8640 -1.8335 39 1 2.3498 5.6068 -0.6725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518001492.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:07 Heat of formation + Delta-G solvation = -9.417029 kcal Electronic energy + Delta-G solvation = -21907.371710 eV Core-core repulsion = 18623.919104 eV Total energy + Delta-G solvation = -3283.452606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.49211 -40.99212 -38.11807 -36.40555 -35.71417 -34.82742 -32.48031 -31.36827 -29.76916 -28.71880 -25.65614 -24.70407 -23.40817 -23.13503 -22.03742 -20.84110 -20.42152 -18.91611 -18.32025 -17.76197 -17.40591 -16.86856 -16.53792 -16.15672 -15.59452 -15.23269 -14.97320 -14.66253 -14.25327 -14.06228 -13.93958 -13.47462 -13.21367 -13.16404 -13.07636 -12.95178 -12.82713 -12.79258 -12.36250 -12.28877 -12.17401 -11.90234 -11.81649 -11.29536 -11.22626 -10.96598 -10.43275 -10.38866 -10.37811 -9.76638 -8.22404 -6.38261 0.40493 0.99371 1.34149 1.44863 1.45120 1.58662 2.15175 2.27301 2.48901 3.06106 3.20008 3.30655 3.72822 3.95357 4.08886 4.11719 4.15759 4.28758 4.32848 4.34399 4.39421 4.53146 4.73015 4.78523 4.79112 4.80043 4.93703 4.97475 4.99940 5.07984 5.24560 5.29906 5.34305 5.47503 5.58338 5.61833 5.87388 5.97401 6.17971 6.49269 6.68263 7.12506 7.33463 8.85344 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021038 B = 0.004793 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.589898 B = 5840.898761 C = 6337.438970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.114 3.886 3 N -0.351 5.351 4 C 0.143 3.857 5 C -0.309 4.309 6 C 0.528 3.472 7 O -0.548 6.548 8 O -0.354 6.354 9 C 0.257 3.743 10 H 0.005 0.995 11 C -0.540 4.540 12 H 0.069 0.931 13 C 0.018 3.982 14 N -0.914 5.914 15 Si 0.978 3.022 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.274 1.274 19 C -0.144 4.144 20 C -0.165 4.165 21 C -0.203 4.203 22 C 0.123 3.877 23 C -0.075 4.075 24 N -0.313 5.313 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.133 0.867 30 H 0.218 0.782 31 H 0.268 0.732 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -12.897 -5.907 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 N -0.128 5.128 4 C -0.010 4.010 5 C -0.322 4.322 6 C 0.375 3.625 7 O -0.441 6.441 8 O -0.270 6.270 9 C 0.204 3.796 10 H 0.023 0.977 11 C -0.578 4.578 12 H 0.087 0.913 13 C -0.182 4.182 14 N -0.552 5.552 15 Si 0.802 3.198 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.202 4.202 21 C -0.240 4.240 22 C -0.044 4.044 23 C -0.134 4.134 24 N -0.135 5.135 25 H 0.072 0.928 26 H 0.124 0.876 27 H 0.071 0.929 28 H 0.121 0.879 29 H 0.151 0.849 30 H 0.235 0.765 31 H 0.077 0.923 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.183 -13.154 -6.757 19.811 hybrid contribution 1.542 0.806 0.974 1.994 sum -11.641 -12.347 -5.783 17.928 Atomic orbital electron populations 1.22031 0.92958 1.04429 1.02391 1.22362 0.96831 0.74594 1.06678 1.48950 1.33278 1.11544 1.19048 1.23641 0.90260 0.92622 0.94517 1.19554 1.12746 0.95259 1.04659 1.20504 0.77353 0.86176 0.78516 1.90691 1.64221 1.22251 1.66900 1.86498 1.56032 1.45369 1.39118 1.19698 0.86405 0.84814 0.88727 0.97727 1.21269 1.06549 0.94754 1.35188 0.91270 1.25786 1.00776 0.95370 0.96237 1.70131 1.36857 1.05702 1.42487 0.85204 0.77717 0.78913 0.77981 1.18526 1.20484 1.19886 1.22720 0.88986 1.02118 1.02430 1.22845 1.00176 0.96674 1.00524 1.23136 1.04568 0.96129 1.00129 1.22676 0.92596 0.95974 0.93124 1.20339 1.03794 0.89706 0.99542 1.77042 1.25230 0.96771 1.14498 0.92784 0.87607 0.92873 0.87860 0.84868 0.76542 0.92276 0.87822 0.89307 0.87998 0.88974 0.89716 0.89690 0.88942 0.90572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.09 71.98 0.73 -1.13 16 2 C 0.11 1.40 7.21 86.38 0.62 2.03 16 3 N -0.35 -8.11 3.65 -346.24 -1.26 -9.37 16 4 C 0.14 3.81 11.28 84.30 0.95 4.76 16 5 C -0.31 -10.93 6.13 -20.16 -0.12 -11.06 16 6 C 0.53 23.38 6.90 70.20 0.48 23.86 16 7 O -0.55 -26.92 12.01 19.75 0.24 -26.69 16 8 O -0.35 -16.91 8.21 -56.65 -0.47 -17.37 16 9 C 0.26 14.08 2.41 29.85 0.07 14.15 16 10 H 0.01 0.31 7.16 -2.39 -0.02 0.30 16 11 C -0.54 -30.38 8.90 25.60 0.23 -30.16 16 12 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 13 C 0.02 1.00 5.20 84.65 0.44 1.44 16 14 N -0.91 -52.69 11.59 21.45 0.25 -52.45 16 15 Si 0.98 42.65 29.54 68.60 2.03 44.68 16 16 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 17 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 C -0.14 -7.30 5.27 -10.79 -0.06 -7.36 16 20 C -0.17 -6.88 9.80 30.62 0.30 -6.58 16 21 C -0.20 -9.07 9.85 30.62 0.30 -8.76 16 22 C 0.12 3.99 7.27 43.53 0.32 4.30 16 23 C -0.08 -2.17 9.92 71.23 0.71 -1.47 16 24 N -0.31 -9.04 12.33 -46.66 -0.58 -9.61 16 25 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.13 0.83 8.06 -2.39 -0.02 0.81 16 30 H 0.22 4.46 8.06 -2.91 -0.02 4.43 16 31 H 0.27 14.47 8.31 -92.70 -0.77 13.70 16 32 H 0.10 5.77 6.46 -2.39 -0.02 5.76 16 33 H 0.09 3.59 6.91 -2.39 -0.02 3.58 16 34 H 0.10 3.70 8.14 -2.39 -0.02 3.68 16 35 H 0.09 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.08 4.00 5.36 -2.39 -0.01 3.99 16 37 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.08 2.52 6.55 -2.38 -0.02 2.50 16 Total: -1.00 -71.47 328.70 6.23 -65.24 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 1.05 Total: 21.54 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 4.97 Total: -15.97 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.59 Total: -71.43 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -0.23 Total: -44.06 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -71.47 6.23 -65.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001492.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.824 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds