Wall clock time and date at job start Mon Mar 30 2020 23:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46505 * 109.47198 * 2 1 4 4 C 1.34219 * 125.73715 * 125.31604 * 3 2 1 5 5 C 1.38131 * 107.40422 * 180.14391 * 4 3 2 6 6 C 1.47287 * 126.42570 * 179.83708 * 5 4 3 7 7 O 1.21526 * 119.99598 * 179.68536 * 6 5 4 8 8 O 1.34750 * 120.00320 * 359.68812 * 6 5 4 9 9 C 1.45200 * 117.00219 * 180.02562 * 8 6 5 10 10 H 1.08991 * 109.47016 * 29.99921 * 9 8 6 11 11 C 1.50699 * 109.47040 * 150.00059 * 9 8 6 12 12 H 1.07999 * 120.00347 * 34.94834 * 11 9 8 13 13 C 1.37879 * 119.99811 * 214.94773 * 11 9 8 14 14 N 1.31511 * 120.00329 * 184.80622 * 13 11 9 15 15 Si 1.86800 * 119.99678 * 4.80452 * 13 11 9 16 16 H 1.48500 * 109.47063 * 84.69113 * 15 13 11 17 17 H 1.48509 * 109.47014 * 204.68230 * 15 13 11 18 18 H 1.48492 * 109.47455 * 324.68325 * 15 13 11 19 19 C 1.53005 * 109.46707 * 269.99853 * 9 8 6 20 20 C 1.53001 * 117.50088 * 351.85102 * 19 9 8 21 21 C 1.52999 * 117.50173 * 60.51592 * 19 9 8 22 22 C 1.41336 * 107.14449 * 359.57159 * 5 4 3 23 23 C 1.50700 * 125.99246 * 180.26473 * 22 5 4 24 24 N 1.30430 * 108.01613 * 0.26837 * 22 5 4 25 25 H 1.08997 * 109.46991 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46851 * 299.99664 * 1 2 3 27 27 H 1.09000 * 109.47173 * 59.99593 * 1 2 3 28 28 H 1.09003 * 109.47052 * 240.00449 * 2 1 3 29 29 H 1.08997 * 109.47594 * 120.00699 * 2 1 3 30 30 H 1.07995 * 126.30349 * 0.02562 * 4 3 2 31 31 H 0.96998 * 120.00295 * 180.02562 * 14 13 11 32 32 H 1.09003 * 115.54413 * 206.18313 * 19 9 8 33 33 H 1.08998 * 117.50121 * 215.00070 * 20 19 9 34 34 H 1.08995 * 117.49718 * 0.02841 * 20 19 9 35 35 H 1.08996 * 117.49619 * 359.97219 * 21 19 9 36 36 H 1.08993 * 117.49993 * 144.99308 * 21 19 9 37 37 H 1.08994 * 109.47691 * 90.00170 * 23 22 5 38 38 H 1.09012 * 109.47240 * 210.00457 * 23 22 5 39 39 H 1.08997 * 109.47500 * 329.99794 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8735 1.9104 0.8890 5 6 3.0713 3.2312 0.5364 6 6 3.9319 4.2028 1.2325 7 8 4.0248 5.3405 0.8153 8 8 4.6164 3.8303 2.3318 9 6 5.4443 4.8402 2.9666 10 1 5.0058 5.8246 2.8034 11 6 5.5259 4.5656 4.4461 12 1 5.5395 3.5476 4.8065 13 6 5.5832 5.6140 5.3397 14 7 5.7496 5.3764 6.6225 15 14 5.4247 7.3720 4.7283 16 1 3.9877 7.7278 4.6118 17 1 6.0859 8.2916 5.6888 18 1 6.0744 7.4942 3.3987 19 6 6.8495 4.8012 2.3624 20 6 7.1757 3.6522 1.4062 21 6 6.9810 5.0696 0.8619 22 6 2.2976 3.4737 -0.6213 23 6 2.2057 4.7797 -1.3676 24 7 1.6770 2.3690 -0.9305 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8935 -0.5139 0.8899 30 1 3.3227 1.3984 1.7270 31 1 5.7895 6.1140 7.2512 32 1 7.6497 5.1598 3.0099 33 1 8.1905 3.2549 1.4245 34 1 6.3891 2.9243 1.2072 35 1 6.0664 5.2736 0.3051 36 1 7.8676 5.6048 0.5222 37 1 2.9772 4.8138 -2.1368 38 1 1.2239 4.8636 -1.8337 39 1 2.3494 5.6066 -0.6721 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518001493.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:53:11 Heat of formation + Delta-G solvation = 9.361450 kcal Electronic energy + Delta-G solvation = -21969.288944 eV Core-core repulsion = 18686.650635 eV Total energy + Delta-G solvation = -3282.638310 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.34214 -39.42540 -36.54538 -34.96033 -34.64049 -32.76300 -31.50347 -30.20686 -28.56945 -27.70354 -24.08773 -22.99992 -22.26548 -21.67523 -20.74945 -19.38263 -19.00715 -17.56314 -16.74654 -16.33220 -16.04562 -15.56624 -15.40785 -14.35729 -14.25160 -14.09231 -13.86233 -13.17545 -12.99990 -12.86664 -12.67734 -12.45953 -12.21887 -12.00025 -11.76504 -11.63817 -11.49754 -11.32925 -10.96764 -10.75938 -10.71255 -10.15794 -9.89353 -9.73455 -9.64635 -9.31110 -9.13405 -8.75347 -8.66337 -8.57701 -6.26073 -4.30000 1.59878 2.24297 2.28989 3.24755 3.32647 3.40590 3.70517 3.72953 4.23873 4.29603 4.64716 4.66153 4.76313 4.81154 4.92346 5.07151 5.17553 5.34825 5.49239 5.61821 5.64541 5.72904 5.78807 5.80884 5.81660 5.89006 6.03750 6.10441 6.28111 6.43216 6.55042 6.64861 6.83188 6.84236 6.88180 7.02309 7.42796 7.56070 7.64396 8.29205 8.73827 8.86472 9.33556 10.84971 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.020099 B = 0.005157 C = 0.004898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.768817 B = 5428.342776 C = 5715.610756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.364 5.364 4 C 0.126 3.874 5 C -0.272 4.272 6 C 0.531 3.469 7 O -0.525 6.525 8 O -0.344 6.344 9 C 0.218 3.782 10 H 0.054 0.946 11 C -0.513 4.513 12 H 0.085 0.915 13 C 0.084 3.916 14 N -0.883 5.883 15 Si 0.865 3.135 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.256 1.256 19 C -0.141 4.141 20 C -0.178 4.178 21 C -0.208 4.208 22 C 0.132 3.868 23 C -0.077 4.077 24 N -0.306 5.306 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.192 0.808 31 H 0.270 0.730 32 H 0.110 0.890 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.767 -8.778 -13.305 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.006 3.994 3 N -0.142 5.142 4 C -0.025 4.025 5 C -0.285 4.285 6 C 0.376 3.624 7 O -0.417 6.417 8 O -0.260 6.260 9 C 0.165 3.835 10 H 0.071 0.929 11 C -0.550 4.550 12 H 0.103 0.897 13 C -0.121 4.121 14 N -0.519 5.519 15 Si 0.691 3.309 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.180 1.180 19 C -0.160 4.160 20 C -0.215 4.215 21 C -0.245 4.245 22 C -0.035 4.035 23 C -0.136 4.136 24 N -0.128 5.128 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.119 0.881 30 H 0.209 0.791 31 H 0.080 0.920 32 H 0.128 0.872 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.550 -9.091 -13.996 18.317 hybrid contribution 0.645 1.227 0.516 1.479 sum -6.905 -7.864 -13.480 17.065 Atomic orbital electron populations 1.22053 0.93550 1.02910 1.03813 1.21805 0.96347 0.77007 1.04192 1.48488 1.34404 1.10473 1.20846 1.23355 0.91165 0.93832 0.94184 1.19626 1.11472 0.94199 1.03185 1.20022 0.77448 0.85710 0.79247 1.90694 1.63896 1.20879 1.66265 1.86701 1.55414 1.46063 1.37846 1.20420 0.83808 0.87518 0.91788 0.92863 1.20694 1.51590 0.96198 0.86499 0.89675 1.24881 0.93659 0.98971 0.94564 1.69849 1.47649 1.32693 1.01712 0.86997 0.79592 0.84608 0.79699 1.19550 1.20830 1.18005 1.23239 1.00585 1.01757 0.90421 1.22764 1.01363 0.91719 1.05637 1.23265 1.03084 0.99153 0.99029 1.22455 0.92676 0.95075 0.93281 1.20350 1.02329 0.90982 0.99940 1.77073 1.25088 0.96716 1.13897 0.90597 0.91844 0.91041 0.89486 0.88124 0.79095 0.92008 0.87221 0.89954 0.89210 0.88028 0.90126 0.90271 0.91185 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.09 37.16 0.37 -0.85 16 2 C 0.13 1.01 7.21 -4.04 -0.03 0.98 16 3 N -0.36 -4.61 3.65 -60.79 -0.22 -4.83 16 4 C 0.13 1.78 11.29 -16.55 -0.19 1.59 16 5 C -0.27 -4.72 6.13 -105.08 -0.64 -5.37 16 6 C 0.53 11.04 6.89 34.41 0.24 11.28 16 7 O -0.53 -11.70 12.00 -19.29 -0.23 -11.93 16 8 O -0.34 -7.82 8.22 -40.63 -0.33 -8.15 16 9 C 0.22 5.41 2.07 -27.88 -0.06 5.35 16 10 H 0.05 1.40 4.32 -51.93 -0.22 1.18 16 11 C -0.51 -14.33 9.22 -34.44 -0.32 -14.65 16 12 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 13 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 14 N -0.88 -26.01 13.96 55.43 0.77 -25.24 16 15 Si 0.87 21.37 26.98 -169.99 -4.59 16.78 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.26 -6.20 6.83 56.52 0.39 -5.82 16 19 C -0.14 -3.15 5.69 -90.62 -0.52 -3.67 16 20 C -0.18 -3.41 9.79 -26.69 -0.26 -3.67 16 21 C -0.21 -4.11 9.86 -26.69 -0.26 -4.37 16 22 C 0.13 2.11 7.27 -82.01 -0.60 1.52 16 23 C -0.08 -1.07 9.92 36.01 0.36 -0.71 16 24 N -0.31 -4.56 12.33 33.90 0.42 -4.14 16 25 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 0.56 8.06 -51.93 -0.42 0.14 16 30 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.11 2.48 8.10 -51.93 -0.42 2.06 16 33 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.09 1.72 6.88 -51.93 -0.36 1.36 16 35 H 0.10 2.12 5.38 -51.93 -0.28 1.84 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.10 1.48 6.55 -51.93 -0.34 1.14 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -32.56 327.93 -6.66 -39.22 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.42 Total: 3.65 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -2.00 Total: -10.30 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.97 Total: -34.21 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: -0.57 Total: -20.09 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.59 Total: 16.78 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.56 -6.66 -39.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518001493.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.579 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds